Using CAT6 cables for 3D printer motor / sensors / fans
The ampacity question is not completely answerable because CAT6 does not specify wire gauge, so the current limit will depend on the specific gauge you get. CAT6 can be anywhere from 22 AWG to 24 AWG, and depending on who you ask this can be good for as much as 7A or as little as 0.5A. Given that you will have a bunch of wires in a bundle, this may cause them to heat up more than if they were in free air. For the steppers (1-2A) a single wire should suffice, but for the heater (around 3-4A) you might want to double up.

EMI will likely not cause any problems regardless of how you wire things up. CAT6 cables have the wires twisted in pairs of 2. Some people recommend to take advantage of these pairs: the +12V and GND of the heater should use a pair, each of the two coils of the steppers should have their own separate pairs. The reasoning behind this is that with equal current flowing in opposite directions in each wire of the pair, the generated electromagnetic fields will cancel out.

Twisted pairs are usually used when dealing with multiple pairs of wires that are carrying high frequency signals that might affect each other. The main concern for crosstalk in this application is if the stepper motor might cause the endstop to be erroneously triggered, but this is only a concern during homing when the feedrate (and thus frequency of the signal) is low anyways.