Height of the prints are always larger
Since nobody had any idea what cause the problem, I investigated for a full week.
The problem is related to Fade Height and .... a warp bed, since I have ABL (Auto Bed Levelling) and Fade Height enable. The compensation was way too big, something like -1.4 or bigger.
So, after I bought a new glass bed and set the fade height to 0 the problem is gone and the prints are looking normal, like -.2 mm or -.3mm in heights.