Can an aircraft be controlled after an ejection?
I'm going to interpret safely as meaning successfully. Ejections mean safety has gone out the window - literally. 

There was a case in the Vietnam War where a pilot continued to fly his heavily damaged F-4 after his RIO (back seat radar operator) ejected. He managed to keep it together long enough to get back over friendly territory before ejecting himself. Note, this was an interview I saw some years ago, I haven't been able to find a link to post. 

In this case the airplane had been hit badly enough that landing was not going to happen, however if the RIO had ejected accidentally or the airplane less damaged then a safe landing would have been possible. So yes, flying has been done and landing is entirely possible after someone has ejected.