Why do the ailerons of this flying wing work oppositely compared to those of an airplane?
Most likely the adverse yaw effect (due to the induced drag of the increased lift on the down-aileron side) is causing the wing to yaw the opposite direction from the intended roll, and the yaw causes the dihedral induced roll (proverse to the yaw) to override the aileron input.
This situation is very commonly seen with very slow flying model aircraft -- indoor Peanut scale, for instance, or Penny Plane models, will often be set to turn left by putting a relatively tiny tab under the left wing, where you'd expect the lift to cause a roll to the right.