Can a Toddler Eat Food Cooked With Honey in it?
That bit of the Wikipedia article is unsourced, but Health Canada confirms and says that spores may be present even in pasteurized honey.  (I never would have thought that.)

I wouldn't expect the cooking of the crackers to damage the spores significantly more than the pasteurization.  I can't say for sure that there will be live spores in the crackers, but it's a definite possibility and if you're concerned about this then you should not risk it.