What causes pasta dough to be holey after running through a machine multiple times?
I watched this video and saw I was adding an extra step. https://www.youtube.com/watch?v=R6KhbS3q5b8

After making pasta again tonight, which came out perfect, I realized I was "re-kneading" the dough after I passed it through the machine.

Tonight I folded the dough once, and resent through the machine over and over, and it came out great! Hope this helps someone!