Using muffin/cupcake pan for basque burnt cheesecake
I expect that you will need to change the baking temperature or (mostly) the cooking time.
The smaller muffin pans have a large surface area so the heat will penetrate quicker and cook your cheesecake quicker.
I suggest you experiment, check to see if there are cheesecake recipes that use muffin pans to have an idea about cooking time and temperature.