How to Set the Control Register on the DS3231 RTC module for Arduino UNO R3?
I took a look at the FabioCuomo-DS3231 library, as I
guess that is what you are using, and I saw nothing related to setting
those two bits. However, you can take inspiration from the code in the
library to implement the functionality yourself.

I would try this:

void enableAlarmInLowPower(void) {
    // Read the control register.
    Wire.beginTransmission(DS3231_ADDRESS);
    Wire.write(DS3231_CONTROL);
    Wire.endTransmission();
    Wire.requestFrom((uint8_t)DS3231_ADDRESS, (uint8_t)1);
    uint8_t value = Wire.read();
    Wire.endTransmission();

    // Update it.
    value |= bit(6) | bit(7);  // set bits 6 and 7

    // Write it back.
    Wire.beginTransmission(DS3231_ADDRESS);
    Wire.write(DS3231_CONTROL);
    Wire.write(value);
    Wire.endTransmission();
}


Warning: not tested.