Vin and Ground pins shorting only under specific conditions
But it only shorts when: The Arduino has power


You must not use a continuity checker or ohm meter on a powered circuit.

Not only will it not work, you risk damaging the meter.

It's also not necessarily safe to use such a meter on an unpowered active electronic circuit like an IC or eval board, as the meter must apply a small amount of power to the circuit to make a measurement - how much power varies between meters and settings, and how much a circuit can tolerate in an unintended way depends on things like polarity and the state of other parts of the circuit.  However, it is common practice to do so - especially for example when there's a fear that the device might already be damaged.