Arduino UNO dead with CNC shield
This sounds as the ATmega328p processor of the UNO was fried. As the UNO has a second processor (ATmega16U2) which is simply a USB-to-serial converter you only see the presence of this in the list of USB devices but it cannot communicate with the board's main processor anymore.

The plug-in order is not that important with the UNO board only but depending on the components you have attached it may be important. especially if the circuit does not have protection against induction current, p.e. fly-back diodes.