Using timers on an Arduino Mega 2560
You can use the function millis(), that returns the number of milliseconds since the Arduino board began running the current program (unsigned long). This number will overflow (go back to zero), after approximately 50 days.

The code below uses the millis() function, a command that returns the number of milliseconds since the Arduino board started running its current program, to blink an LED.

/* Blink without Delay

 Turns on and off a light emitting diode(LED) connected to a digital  
 pin, without using the delay() function.  This means that other code
 can run at the same time without being interrupted by the LED code.

 The circuit:
 * LED attached from pin 13 to ground.
 * Note: on most Arduinos, there is already an LED on the board
 that's attached to pin 13, so no hardware is needed for this example.


 created 2005
 by David A. Mellis
 modified 8 Feb 2010
 by Paul Stoffregen

 This example code is in the public domain.


 http://www.arduino.cc/en/Tutorial/BlinkWithoutDelay
 */

// constants won't change. Used here to 
// set pin numbers:
const int ledPin =  13;      // the number of the LED pin

// Variables will change:
int ledState = LOW;             // ledState used to set the LED
long previousMillis = 0;        // will store last time LED was updated

// the follow variables is a long because the time, measured in miliseconds,
// will quickly become a bigger number than can be stored in an int.
long interval = 1000;           // interval at which to blink (milliseconds)

void setup() {
  // set the digital pin as output:
  pinMode(ledPin, OUTPUT);      
}

void loop()
{
  // here is where you'd put code that needs to be running all the time.

  // check to see if it's time to blink the LED; that is, if the 
  // difference between the current time and last time you blinked 
  // the LED is bigger than the interval at which you want to 
  // blink the LED.
  unsigned long currentMillis = millis();

  if(currentMillis - previousMillis &gt; interval) {
    // save the last time you blinked the LED 
    previousMillis = currentMillis;   

    // if the LED is off turn it on and vice-versa:
    if (ledState == LOW)
      ledState = HIGH;
    else
      ledState = LOW;

    // set the LED with the ledState of the variable:
    digitalWrite(ledPin, ledState);
  }
}


Source: http://arduino.cc/en/Tutorial/BlinkWithoutDelay