Seeking to measure back EMF of an electric motor via Arduino
There is no need to measure the windings of the motor... please see the great write up for full details using an Arduino to sense the back EMF on a PWM driven motor to control the speed. This can be applied to a 3 phase motor as well, see Back EMF.

This person uses the analog input and a voltage divider to sense when the EMF happened, basically he gets the motor running, then periodically grounds one side of the motor through the H-Bridge he is using to drive it, and the other side of the  motor goes to a voltage divider into the Arduino... and it is also an open circuit at this time so the voltage generated is from the collapsing of the coil field so if it is 12V it becomes a safe 4V at the Arduino Analog input.

Now your question says "measure the back EMF", what I provided senses the back EMF... to measure it you just need to sample the Analog pin a bunch of times, and that will give you a reference of the max amplitude.