Window timeout alert
A few points to make about this:


(function () {
//    timedRefresh(10); //3600000
    delayedAlert();

    var timeoutID;

    function delayedAlert() {
        clearAlert();
      timeoutID = window.setTimeout(slowAlert, 10000);
    }

    function slowAlert() {
      alert("You may have been logged out due to inactivity. Click OK to refresh the page.");
    }

    function clearAlert() {
      window.clearTimeout(timeoutID);
    }
})();




slowAlert/delayedAlert can be improved by moving slowAlert into delayedAlert as follows:




function delayedAlert() {
    clearAlert();
    timeoutID = window.setTimeout(function(){
        alert("You may have been logged out due to inactivity. Click OK to refresh the page.");
    }, 10000);
}  



I can't see why the clearTimeout call deserves its own function, when it only gets called from delayedAlert; You could just put it in delayedAlert:




function delayedAlert() {
    window.clearTimeout(timeoutID);
    timeoutID = window.setTimeout(function(){
        alert("You may have been logged out due to inactivity. Click OK to refresh the page.");
    }, 10000);
}



You can make delayedAlert an anonymous function, so that it cannot be called other than inside that block by changing function delayedAlert() into var delayedAlert = function()
You call delayedAlert before timeoutID is defined:



delayedAlert();

var timeoutID;



If you're going to use globals (which are recommended against), declare them first, at the top.

(function(){
    var timeoutID;
    // functions and whatnot
    delayedAlert();




All resulting in:

(function(){
    var timeoutID;
    var delayedAlert = function() {
        window.clearTimeout(timeoutID);
        timeoutID = window.setTimeout(function(){
            alert("You may have been logged out due to inactivity. Click OK to refresh the page.");
        }, 10000);
    }
    delayedAlert();
})();