Counting different kinds of line terminator characters in files
Your program works fine and you are correctly using goroutines, but the code isn't very idiomatic.  

Producer/Consumer architecture

What we have here is a typical producer/consumer scenario. The producer is filepath.Walk() wich returns a list of files, and the consumers are goroutines executing regex on file content. 

So instead of the splitIntoChunks() method, we could just have a chan string: the producer sends file names to the channel, and the consumers loop over it and parse the file content. 

This have two main advantages: 


code is easier to read 
producer and consumer can work in parallel


So the code would looks like

results := make(chan Endings, 2) // chan to get the results of each worker
var wg sync.WaitGroup
wg.Add(2)
files := make(chan string, 1000) // channel containing file list
for i := 0; i &lt; 2; i++ {
    go run(files, results, &amp;wg) // start the producers 
}
filepath.Walk(searchDir, func(path string, f os.FileInfo, err error) error {
    if !f.IsDir() {
        files &lt;- path // feed the channel
    }
    return nil
})
close(files)
wg.Wait()
close(results)


Work on []byte rather than on string

This is a general advice regarding performances: always prefer working on []byte instead of working on string to avoid extra allocations. 
The regex package has methods to work on string or on byte slice, so instead of 

fileContent, err := ioutil.ReadFile(filename)
c &lt;- countEndings(string(fileContent)) 
...
x := len(crlf.FindAllStringIndex(s, -1))


we can just use 

fileContent, err := ioutil.ReadFile(fileName)
...
x := len(crlf.FindAllIndex(fileContent, -1))


Don't panic

The code shouldn't panic on every error. For example, if the user running the program don't have the permission to read a file in searchDir, the program should not crash but rather log the error 

so avoid method like this: 

func check(e error) {
    if e != nil {
        panic(e)
    }
}


instead handle the error localy: 

fileContent, err := ioutil.ReadFile(fileName)
if err != nil {
    fmt.Printf("fail to read file %s: %v\n", fileName, err)
}


Other consideration

It's better to define regex as global var: 

var (
    crlf = regexp.MustCompile("\r\n")
    lf   = regexp.MustCompile("\n")
)


It's also better to use the flag package to parse arguments instead of relying on os.Args

Here is the final version of the code: 

package main

import (
    "flag"
    "fmt"
    "io/ioutil"
    "os"
    "path/filepath"
    "regexp"
    "sync"
)

var (
    crlf = regexp.MustCompile("\r\n")
    lf   = regexp.MustCompile("\n")
)

type Endings struct {
    crlf, lf uint
}

func (e *Endings) countEndings(fileName string) {
    c, err := ioutil.ReadFile(fileName)
    if err != nil {
        fmt.Printf("fail to read file %s: %v\n", fileName, err)
    }
    x := len(crlf.FindAllIndex(c, -1))
    y := len(lf.FindAllIndex(c, -1))

    e.crlf += uint(x)
    e.lf += uint(y - x)
}

func run(files &lt;-chan string, results chan&lt;- Endings, wg *sync.WaitGroup) {
    e := &amp;Endings{}
    for f := range files {
        e.countEndings(f)
    }
    results &lt;- *e
    wg.Done()
}

func main() {

    searchDir := flag.String("dir", "dir", "directory to search")
    nWorker := flag.Int("n", 2, "number of worker")
    flag.Parse()

    results := make(chan Endings, *nWorker)

    var wg sync.WaitGroup
    wg.Add(*nWorker)
    files := make(chan string, 1000)
    for i := 0; i &lt; *nWorker; i++ {
        go run(files, results, &amp;wg)
    }
    filepath.Walk(*searchDir, func(path string, f os.FileInfo, err error) error {
        if !f.IsDir() {
            files &lt;- path
        }
        return nil
    })
    close(files)
    wg.Wait()
    close(results)

    count := &amp;Endings{}
    for e := range results {
        count.crlf += e.crlf
        count.lf += e.lf
    }
    fmt.Printf("crlf: %d, lf: %d\n", count.crlf, count.lf)
}


Performance

The new code is slightly faster: 

old: 

$ time ./test ~/go/src/golang.org          
crlf: 6231, lf: 1589462
./test ~/go/src/golang.org  1,78s user 0,23s system 167% cpu 1,201 total


new: 

$ time ./test -dir ~/go/src/golang.org -n 6 
crlf: 6231, lf: 1589462
./test -dir ~/go/src/golang.org -n 6  1,48s user 0,18s system 181% cpu 0,911 total