Using VBA Copying from one ,master sheet to other workbooks based on the file names provided in master book
Your code and problem description is confusing. It seems as if you're halfway debugging the posted code. However, I've set up an example below that you can adapt to your situation. Some notable points:


Always use Option Explicit
Using Activate or Select is almost never necessary
Use clear variables to indicate the source and destination data, it
will help you keep things straight when writing your code and also
later when you have to maintain it. 
An internal set of variables can be used to copy the data from one workbook to another. Using the Excel Copy is not necessary.
The "clean up" code at the bottom of my example is not strictly necessary in VBA (the interpreter will detect those objects as out of scope and will destroy them automatically). But for me it's a good habit to keep track of what I'm using.
Saving the previous state of the DisplayAlerts flag is a good idea when your code will change it. You don't necessarily know what the user's current setting will be and, aside from the changes your macro creates, you don't want the user to experience sudden unexpected changes.


Option Explicit

Sub Macro1()
    Dim previousAlertsFlag As Boolean
    Dim masterWB As Workbook
    Dim masterWS As Worksheet
    Dim destWB As Workbook
    Dim destWS As Worksheet
    Dim lastRow As Long
    Dim filepath As String
    Dim fullpath As String
    Dim country As String
    Dim countryData As Variant
    Dim r As Integer

    '--- save the current state of Alerts display, so it can
    '    be restored later
    previousAlertsFlag = Application.DisplayAlerts
    Application.DisplayAlerts = False

    '--- establish connections to the master data
    Set masterWB = ThisWorkbook
    Set masterWS = masterWB.Worksheets("Sheet3")
    lastRow = masterWS.Cells(masterWS.Rows.Count, "A").End(xlUp).Row
    filepath = "C:\Users\abhayl.INDIA\Desktop\For Primary Team\For Primary Team\"

    For r = 2 To lastRow
        country = masterWS.Cells(r, 1).Value
        countryData = masterWS.Cells(r, 2).Value

        fullpath = filepath &amp; country
        Set destWB = Workbooks.Open(fullpath)
        Set destWS = destWB.Sheets("Specific Questions")
        destWS.Cells(1, 2).Value = countryData
        destWB.Close SaveChanges:=True
    Next i

    '--- clean up
    Set destWS = Nothing
    Set destWB = Nothing
    Set masterWB = Nothing
    Set masterWS = Nothing

    '--- restore the previous state of the Alerts flag
    Application.DisplayAlerts = previousAlertsFlag
End Sub