Checking for viruses in uploaded files using ClamAV
there seems to be logical falacy: what if ClamAVClient.isCleanReply() returns false but no exception is thrown? there is no else clause there, and checkVirus would return no virus found.
instead of returning String, why doesn't checkVirus() re-throw the exception? that way, it can also return a String of a virus name (or whatever is produced from ClamAVClient)
instead of passing the String, make it public. then any class can refer to it as FileUpload.NO_VIRUS_FOUND 
better still, make an enum out of the constant. that way, you can add values to the enum (like VIRUS_FOUND ...)


though it is arguable, Coding by exception is considered an anti pattern.  Exceptions should be reserved for error conditions, not as indicator that a virus  was found. 

EDIT:

with regards to the question how to implement pt 2:
First, I would create a custum exception that signifies a failed virus check 

public class VirusCheckException extends Exception {
    public VirusCheckException(Throwable cause) {
        super(cause);
    }
    public VirusCheckException(String message, Throwable cause) {
        super(message, cause);
    }
    // also rest of constructors...
}


then, instead of returning the exception message, throw the custom exception. the return value is freed to return more rich data from the scan (if possible):

public static String checkVirus(FileConfig fileconfig, InputStream inputStream, String noVirusFound) 
throws VirusCheckException {
    try {
        ClamAVClient cl = new ClamAVClient(fileConfig.getClamavHost(), fileConfig.getClamavPort(), DEFAULT_TIMEOUT);      

        Object response = cl.scan(inputStream);
        if (ClamAVClient.isCleanReply(response)) {
            return noVirusFound;
        } else {
            return ClamAVClient.getVirusName(response);  // assuming there is such...
        }
    } catch (Exception e) {
        return new VirusCheckException("Virus Found!", e);
    }
}


now you will have to catch that exception in the callng method and handle it:

public void checkFile(...) {
    try {
        antiVirusResult = FileCheckClass.checkVirus(getConfig(), file.getInputStream(), NO_VIRUS_FOUND);
    } catch (VirusCheckException e) {
        generateAntiVirusMessages(e.getMessage());
        throw new ValidatorException(msgs);
    }
}