Crop a man out of a 360 video
To do any cropping of video in Autopano Video, you will need additional software from Kolor: either Autopano Pro or Autopano Giga. That will allow you to click the edit button below the preview window to send it to the editing program and apply a crop.

Alternatively, you can render out your video from Autopano Video that includes the cameraman, and then make your crop in a video editing program like Premiere Pro or Final Cut (even iMovie and Windows Movie Maker may work). That video can still be rendered as 360 video.