Syncing Shogun Footage with PluralEyes?
I am on Premiere CC 2015, which has its own PluralEyes equivalent for synchronizing audio under the "Merge" function. (I think it was also on CC 2014 but I am not sure what version originated audio sync functionality.)

Select your two clips in your bin and merge them (it's under "Clip"). In the menu, under "Synchronize Point" choose "Audio" and make sure the "Track Channel" dropdown is set to a track that has audio on it. The Shogun material I was using had audio on track 3.