Adobe CC Post-Production Workflow (Story, Prelude etc.)
Your workflow is a little off from how it is designed by Adobe.

Step 1: Adobe Story: You build your script and can break it into shots that you need to capture before you even start shooting.  This can then work as the blueprint to plan out shooting of the project.

Step 2: Adobe Prelude: I believe you can preconfigure a shot list that needs to be captured with meta data about the scenes.  Prelude can either be used for live capture or can be used to Ingest and organize footage on site during shooting.  Think of it a bit like Lightroom for Video.  It's intended to organize the shots so that they can more effectively be reviewed and pulled up during shooting and post production.

Step 3: Premiere: Rough edit, start laying out clips and getting the flow of the piece together.

Step 4/5: After Effects: any touch up or effects work that needs to be done on individual clips can be processed through After Effects and sent back to Premiere.  This could also be done before rough editing, but is probably easier after/during.  This may also include color grading or SpeedGrade may be used.

Step 4/5: Audition: basically the same thing as After Effects, but on the sound track/audio side on a clip level.

Step 6: Premiere: Once assets are finalized, final edit can occur to produce the finished timings for the video.

Step 7/8: Audition: Mastering, finish the audio and sound-tracking for the entire finished video to make sure it flows well from one clip to another.

Step 7/8: After Effects or Speed Grade: Perform final color grading to ensure the entire film flows well together.

Step 9: Media Encoder or Encore: Prepare final output format, either encoding for the web or building a DVD and/or Blueray disk for release.