Where can I find internal Python scripts
Here is my temporary solution, I export all of the python files by running this script...I have a bad feeling this could be done much easier

import bpy
import os

numtexts = len(bpy.data.texts)
texts = bpy.data.texts

for i in range(0,numtexts):
    f = open(os.path.normpath("scripts/"+texts[i].name),'w')
    numLines = len(texts[i].lines)
    for j in range(0,numLines):
        f.write(texts[i].lines[j].body)
        f.write("\n")
    f.close()