Blender Shifts Audio Sometimes
The solution to this issue is to make sure you use consistent frame rates. One of the videos I pulled in changed the frame rate from 30 FPS to a custom frame rate which screwed the other clips. Setting the frame rate back to 20 FPS fixed this issue for me. I know you can use handbrake to set all of your videos to the same frame rate; however, if you are like me and just want a simple solution of
setfps &lt;video-name&gt; &lt;frame-rate&gt;

or at least a handbrake-like program that uses mpv for previews instead of VLC, I am unsure what program to use.
As an update, you can use FFmpeg to reencode a framerate!