Importing trajectories to create an animation
There are several easy ways to exchange data, common formats are .csv or .json and both can be written and read easily.

What you might end up doing is have csv file like this:

timestamp,p1x,p1y,p1z,p2x,p2y,p2z,p3x,p3y,p3z....etc
0:000,x,y,z,x,y,z,x,y,z....
0:020,x,y,z,x,y,z,x,y,z....
0:030,x,y,z,x,y,z,x,y,z....


The timestamp could be as fine grained as you want, or 24 frames per second. Exactly how you turn the information into an animation is entirely up to you and can also be entirely scripted.

Here's a movement.csv, which uses a frame number instead of the timestamp, simply because it makes the example more convenient.

To start off you might want to simply key-frame some empties. Let's say we have 48 lines of data for 3 points in space, and they describe these arcs (though can be any complex path)



import csv
import os
import bpy

# add 3 empties programatically to be certain it works as a demo
mt1 = bpy.data.objects.new('mt1', None)
mt2 = bpy.data.objects.new('mt2', None)
mt3 = bpy.data.objects.new('mt3', None)
empties = [mt1, mt2, mt3] 
for m in empties:
    bpy.context.scene.objects.link(m)

filename = 'movement.csv'
directory = '/home/zeffii/Desktop'  # &lt;-- if you have linux or osx
# directory = r'c:\some\directory'  # &lt;-- if windows, the r is important
# directory = 'c:/some/directory'  # &lt;-- if windows (alternative)

fullpath = os.path.join(directory, filename)

with open(fullpath, 'r', newline='') as csvfile:
    ofile = csv.reader(csvfile, delimiter=',')
    next(ofile) # &lt;-- skip the x,y,z header

    for line in ofile:
        f, *pts = line

        # these things are still strings (that's how they get stored in the file)
        # here we recast them to integer and floats
        frame_num = int(f)
        fpts = [float(p) for p in pts]
        coordinates = [fpts[0:3], fpts[3:6], fpts[6:9]]

        bpy.context.scene.frame_set(frame_num)
        for ob, position in zip(empties, coordinates):
            ob.location = position
            ob.keyframe_insert(data_path="location", index=-1)