Can i run blender as on a server as a binary source code?
You can use blender with no GUI, directly from a terminal or command line. As long as you can access the remote server (via ssh or remote desktop) you can issue commands to control blender.

The most basic command is

blender -b file.blend 


-b will let Render in the background (without UI).

For a detailed list of other options read.

https://docs.blender.org/manual/en/latest/render/workflows/command_line.html

https://docs.blender.org/manual/en/latest/advanced/command_line/arguments.html