Why isn't aluminium involved in biological processes?
One argument put forward has been that aluminum is very poorly bioavailable, moreso than many other elements.  Aluminum oxide is very insoluble in water.  In addition, any dissolved aluminum that does form in seawater is likely to be precipitated by silicic acid, forming hydroxyaluminosilicates.  

From Chris Exeter's 2009 article in Trends in Biochemical Sciences:


  But how has the by far most abundant metal in the Earth's crust remained hidden from biochemical evolution? There are powerful arguments, many of which influenced Darwin's own thinking [15], which identify natural selection as acting upon geochemistry as it acts upon biochemistry. I have argued previously that the lithospheric cycling of aluminium, from the rain-fuelled dissolution of mountains through to the subduction of sedimentary aluminium and its re-emergence in mountain building, depends upon the ‘natural selection’ of increasingly insoluble mineral phases of the metal [7]. The success of this abiotic cycle is reflected in the observation that less than 0.001% of cycled aluminium enters and passes through the biotic cycle. In addition, only an insignificant fraction of the aluminium entering the biotic cycle, living things, is biologically reactive. However, my own understanding of such an explanation of how life on Earth evolved in the absence of biologically available aluminium was arrived at by a somewhat serendipitous route! In studying the acute toxicity of aluminium in Atlantic salmon I discovered that the aqueous form of silicon, silicic acid, protected against the toxicity of aluminium [16]. Subsequent work showed that protection was afforded through the formation of hydroxyaluminosilicates (HAS) [17] which, intriguingly, are one of the sparingly soluble secondary mineral phases of the abiotic cycling of aluminium! The discovery that silicic acid was a geochemical control of the biological availability of aluminium, though now seemingly obvious in hindsight, was a seminal moment in my understanding of the bioinorganic chemistry of aluminium, and although it helped me to understand the non-selection of aluminium in biochemical evolution, it also provided me with a missing link in the wider understanding of the biological essentiality of silicon.


Dr. Exeter is one of the few scholars who appears to have written in depth about this issue.  Thus, perhaps it is fair to say that (a) your question doesn't have a definitive answer, but (b) the poorly accessible nature of aluminum over geological time due to its interaction with and precipitation by silicic acid is the leading hypothesis.

It's worth noting that when aluminum is artificially introduced into metalloenzymes in place of naturally occuring metals, the resulting alumino-enzymes can retain activity, as a 1999 article in JACS by Merkx &amp; Averill shows.