Formation of Acetal from Hemiacetal?
The acetal reaction is performed in $\ce{H+/ROH}$ condition (e.g., $\ce{H+/CH3OH}$). The general mechanism can be found in any Organic Chemistry textbook. The reaction is reversible. The first step is protonation of aldehyde (or ketone) carbonyl oxygen by an acid ($\ce{H+}$):



The protonation makes the carbonyl carbon more susceptible to nucleophilic attack by available alcohol (e.g., methanol in the scheme). This gives the tetrahedral protonated hemiactal intermediate, which undergoes deprotonation to give stable hemiacetal. All of these steps are reversible, but forward reaction is favored due to highly available alcohol molecules (Le Chatelier's Principle). 

The hemiketal has two oxygen molecules, $\ce{OH}$ and $\ce{OR}$, both of which are susceptible to protonate. However, if $\ce{OR}$ is protonate, reaction would go backward. Of cause, it protonates because the reaction is reversible (see the scheme). Yet, more favored is $\ce{OH}$, which would subsequently eliminate as a $\ce{H2O}$ molecule. The resultant positively charged carbonyl compound undergoes second nucleophilic attack by another $\ce{CH3OH}$ molecule to give protonated acetal, which proceeds to give expected acetal by deprotonation. Since we are using the alcohol as the reaction solvent, forward reaction is favored by multiple times.

OP's suggestion of protonation of $\ce{OH}$ group is legitimate, but reaction goes backward for a moment, but forward reaction favorably proceed to the end (Recall Fischer esterification). If you want back your aldehyde (or ketone), you can make backward reaction favored by using water as your solvent ($\ce{H+/H2O}$).