Why is the overall change in entropy of Photosynthesis positive?
To answer this question, we need to be clear whether we are talking about the change in entropy of the system, the surroundings and the Universe.
With regards to the entropy of the Universe, the answer is direct: photosynthesis is a process we observe to happen on a macroscopic scale. Therefore, by the second law of thermodymamics, photosynthesis must cause the entropy of the Universe to increase, period.
With regards to the entropy of just the chemical reagents, if we consider those as our system, then indeed the entropy of formation of glucose is negative, equal to approximately $\mathrm{-40\ cal\ mol^{-1}\ K^{-1}}$.
The way to reconcile these facts is to note that there is a significant increase in entropy which comes from the destruction of high-energy visible photons from the Sun, whose energy is scattered into chemical bonds and multiple low-energy far infrared photons.
In a simplified analysis, if three photons of $\mathrm{700\ nm}$ light are absorbed to generate one molecule of glucose and excess energy is radiated away with black body spectrum at $\mathrm{300\ K}$, then photosynthesis is allowed by the second law of thermodynamics, so long as the photosynthetic efficiency is less than 88%. The observed efficiency of photosynthesis using red light is on the order of 59%, so this requirement is cleared with room to spare.
Depending on the level of detail you want, it gets complicated to work through all the checking and balancing of entropy changes at every individual microscopic step, but the overall results must hold as stated above.
References:
Negative entropy and photosynthesis. Wesley Brittin and George Gamow, Proceedings of the National Academy of Sciences, 1961, 47 (5), 724-727. DOI: 10.1073/pnas.47.5.724
Entropy balance in photosynthesis. Wolfgang Yourgrau and Alwyn Van Der Merwe, Proceedings of the National Academy of Sciences, 1968, 59 (3), 734-737. DOI: 10.1073/pnas.59.3.734
Entropy production and the Second Law in photosynthesis. Robert S. Knox and William W. Parson, Biochimica et Biophysica Acta (BBA) - Bioenergetics, 2007, 1767 (10), 1189-1193. DOI: 10.1016/j.bbabio.2007.07.004