The difference between peptide bonds and the bonds between polypeptides?
The term peptide bond refers to amide bonds. The 21 amino acids in insulin's A-chain are covalently linked by 20 amide bonds. The 30 amino acids in insulin's B-chain are linked by 29 amide bonds. The two polypeptides are covalently linked by disulfide bonds, which are not amide bonds.

The 3D structure of proteins is a complex topic and a field of intense research. It's worth pointing out though that even polypeptides (with no disulfides or other covalent linkages) have a more complex 3D structure than you might expect. I suggest you look into alpha-helices and beta-sheets as an entry into the topic.

Took some info from the Beta Cell Consortium.