What is the Gibbs free energy difference between conformational states
Your question implies that you define the Gibbs free energy as $G=-RT\ln(Z)$ where $Z$ is the partition function, in which case there will be a difference in $G$ only if there is a difference in the partition function for your two configurations, i.e differences in energy levels and/or in the population in these levels. That will depend entirely on your system (and also the temperature).