Does SCF energy mean same as HF energy?
Answering your question from the title: no, SCF does not necessarily mean HF. Essentially the same self-consistent field (SCF) procedure is used to solve both the Hartree-Fock (HF) equations and the Kohn-Sham (KS) one, so for the case of DFT, SCF energy means not HF energy, but rather KS energy.

Regarding discrepancies in results obtained with different programs, there might be few reasons out there: different definitions of the B3LYP functional, different harmonics used for 6-311G basis sets (spherical vs. cartesian), different integration grids, different SCF convergence criteria, etc.



I checked the TURBOMOLE documentation and indeed found that to use the very same B3LYP functional that is used in Gaussian (with the VWN3 correlation) you need to use b3-lyp_Gaussian in TURBOMOLE, not b3-lyp. So, first of all, I suggest you try b3-lyp_Gaussian in TURBOMOLE instead of b3-lyp.