Harmful bacteria may also emit toxins that damage the body. Common pathogenic bacteria and the types of bacterial diseases they cause include: Escherichia coli and Salmonella cause food poisoning. Helicobacter pylori cause gastritis and ulcers.Neisseria gonorrhoeae causes the sexually transmitted disease gonorrhea. Neisseria meningitidis causes meningitis.armful bacteria may also emit toxins that damage the body. Common pathogenic bacteria and the types of bacterial diseases they cause include: Escherichia coli and Salmonella cause food poisoning. Helicobacter pylori cause gastritis and ulcers.