Pediatrician New York, NY Salary. Pediatrician New York, NY average salary is $81,810, median salary is $65,354 with a salary range from $21,830 to $1,977,402.Pediatrician New York, NY salaries are collected from government agencies and companies.ediatrician New York, NY Salary. Pediatrician New York, NY average salary is $81,810, median salary is $65,354 with a salary range from $21,830 to $1,977,402.