For example the median expected annual pay for a typical Logistics Manager in the United States is $103,023 so 50% of the people who perform the job of Logistics Manager in the United States are expected to make less than $103,023.Source: HR Reported data as of October 2015. Median $103,023.he annual salary for someone with the job title Logistics Manager may vary depending on a number of factors including industry, company size, location, years of experience and level of education.