Municipal Clerks have the best average pay in New York, where they get pay levels, on average, of near $51160. People holding these jobs receive the highest salary in Health Care and Social Assistance, where they get wages of $36340. The national wage distribution is shown below. To overlay local salaries for a Municipal Clerk, please select your state. Also known as: Circuit Court Clerk, City Clerk, Court Clerk, Courtroom Clerk, Deputy Court Clerk, Docket Clerk, Dog Licenser, License Clerk, Motor Vehicle License Clerk, Motor Vehicle Representative. Get new Municipal Clerk jobs by email.