Wal-Mart Pharmacist Salary. Wal-Mart Pharmacist average salary is $117,475, median salary is $119,018 with a salary range from $34,320 to $152,827. Wal-Mart Pharmacist salaries are collected from government agencies and companies.Each salary is associated with a real job position.al-Mart Pharmacist Salary. Wal-Mart Pharmacist average salary is $117,475, median salary is $119,018 with a salary range from $34,320 to $152,827. Wal-Mart Pharmacist salaries are collected from government agencies and companies.