Hospital pharmacist salary in Australia. Australia recorded an average hospital pharmacist salary of AU$59,519 per annum or an equivalent rate of AU$32 an hour in PayScale. For regular hours, pay rates are from AU$25.12 to AU$44.11 while excess hours are being paid from AU$1.51 to AU$84.79.ayScale in comparison shows a median hospital salary of $100,912 per annum or an equivalent wage rate of $51 an hour. The regular hours have rates ranging from $43.39 to $61.20 while overtime pay could be in between the rates of $19.91 and $92.21.