The starting salary for naturopathic doctor averages from between $38,080 – $57,120 per annum, while an average naturopathic doctor receives an annual salary ranging from between $46,240 – $69,360 per year. naturopathic doctor’s salary varies based on the age such as the one in 20s earns up to £10,125, in 30s earns about £13,230, in 40s and in 50s earns about £15,660 per year. The average hourly wage for a naturopathic doctor in UK is £6.75.