Depending on the type of microchip and whether your dog gets the procedure at a veterinary office, a microchipping clinic or a participating pet supply store, the one-time fee generally ranges from $25 to $50.icrochip Overview. A microchip is to your dog what the LoJack Vehicle Recovery System would be to your car. No bigger than a grain of rice, a microchip is a radio-frequency identification implant that provides your dog with permanent ID.