It is mostly made of molecular hydrogen and helium in roughly solar proportions; other chemical compounds are present only in small amounts and include methane, ammonia, hydrogen sulfide and water. Although water is thought to reside deep in the atmosphere, its directly measured concentration is very low.he internal heat may be important for the dynamics of the Jovian atmosphere. While Jupiter has a small obliquity of about 3°, and its poles receive much less solar radiation than its equator, the tropospheric temperatures do not change appreciably from the equator to poles.