▁control ▁of ▁the ▁world . ▁G . I . ▁Joe ▁coun ters ▁by ▁going ▁on ▁the ▁off ensive , ▁mobil izing ▁the ▁entire ▁G . I . ▁Joe ▁ro ster , ▁and ▁launch ing ▁miss ions ▁to ▁capture ▁Cob ra ▁agents ▁still ▁at ▁large . ▁Meanwhile , ▁Cob ra ▁Commander ▁rec ruits ▁soldier ▁Nick ▁Ba iley , ▁making ▁him ▁the ▁last ▁member ▁of ▁a ▁new ▁el ite ▁Cob ra ▁unit ▁code - named ▁" The ▁Pl ague ". ▁The ▁main ▁G . I . ▁Joe ▁team ▁heads ▁to ▁Israel , ▁where ▁they ▁help ▁stop ▁an ▁assass ination ▁attempt . ▁While ▁the ▁team ▁is ▁away , ▁Cob ra ▁Commander ▁attacks ▁Washington , ▁D . C ., ▁taking ▁over ▁the ▁White ▁House ▁and ▁capt uring ▁the ▁President . ▁Cob ra ▁also ▁takes ▁over ▁Fort ▁Me ade , ▁while ▁Alexander ▁McC ull en ▁attacks ▁London ▁and ▁France ▁with ▁the ▁Iron ▁Gren ad iers . ▁ ▁Cob ra ▁Commander ▁then ▁sends ▁Tom ax ▁and ▁a ▁squad ▁of ▁Night ▁C ree pers ▁to ▁" The ▁C off in ", ▁a ▁prison ▁in ▁Green land ▁created ▁to ▁hold ▁all ▁of ▁G . I . ▁Joe ' s ▁captured ▁enemies . ▁Tom ax ▁man ages ▁to ▁free ▁Major ▁Bl ud d ▁and ▁several ▁others , ▁while ▁killing ▁those ▁Cob ra ▁Commander ▁considered ▁" lo ose ▁ends ". ▁D ela ▁E den , ▁who ▁had ▁been ▁fre ed ▁from ▁The ▁C off in , ▁is ▁rec ru ited ▁by ▁Cob ra ▁Commander ▁to ▁find ▁Dest ro ▁and ▁the ▁Baron ess ,