▁the ▁last ▁to ▁arrive , ▁but ▁after ▁hearing ▁the ▁Commander ' s ▁plan , ▁he ▁turns ▁the ▁tables ▁on ▁Cob ra ▁Commander , ▁and ▁takes ▁control ▁of ▁Cob ra . ▁ ▁Cob ra ▁Commander ▁eventually ▁reg ains ▁control ▁with ▁the ▁help ▁of ▁Storm ▁Sh adow , ▁and ▁creates ▁plans ▁to ▁get ▁reven ge ▁on ▁both ▁Dest ro ▁and ▁Haw k . ▁Later , ▁Storm ▁Sh adow ▁breaks ▁free ▁of ▁Cob ra ' s ▁mind ▁control , ▁and ▁contacts ▁Billy ▁for ▁help . ▁Billy ▁rec ruits ▁S nake ▁E yes ▁and ▁Kam ak ura ▁to ▁assist ▁him ▁in ▁res cu ing ▁Storm ▁Sh adow , ▁but ▁not ▁before ▁Cob ra ▁Commander ▁brain w ash es ▁him ▁again . ▁A ▁battle ▁between ▁S nake ▁E yes ▁and ▁Storm ▁Sh adow ▁ends ▁in ▁a ▁st alem ate , ▁leaving ▁Storm ▁Sh adow ▁in ▁the ▁control ▁of ▁Cob ra ▁Commander . ▁ ▁A ▁dist ress ▁call ▁from ▁T ' J b ang ▁leads ▁the ▁Jo es ▁to ▁Tib et , ▁where ▁Cob ra ▁Commander ▁and ▁Storm ▁Sh adow ▁are ▁hiding ▁with ▁the ▁Red ▁Nin ja ▁cl an . ▁S nake ▁E yes ▁defe ats ▁their ▁leader ▁Se i ▁T in , ▁and ▁becomes ▁the ▁new ▁master ▁of ▁the ▁Red ▁Nin ja ▁cl an . ▁The ▁Jo es ▁are ▁then ▁sent ▁on ▁a ▁mission ▁to ▁Cob ra ▁Island , ▁where ▁Cob ra ▁Commander ▁has ▁returned ▁to ▁power . ▁Meanwhile , ▁Dest ro ▁is ▁double - cross ed ▁by ▁the ▁president ▁of ▁Sierra ▁G ordo , ▁and ▁makes ▁a