# Use the latest version of pip.
!pip install --upgrade pip
!pip install --upgrade "tfx[kfp]<2"

"""
Explanation: Reading Data from BigQuery with TFX and Vertex Pipelines
Learning objectives

Set up variables.
Create a pipeline.
Run the pipeline on Vertex Pipelines.

Introduction
In this notebook, you will use the BigQueryExampleGen component which reads data from BigQuery to TFX pipelines. This notebook-based tutorial will use Google Cloud BigQuery as a data source to train an ML model. The ML pipeline will be constructed using TFX and run on Google Cloud Vertex Pipelines.
This notebook is based on the TFX pipeline you built in Simple TFX Pipeline for Vertex Pipelines Tutorial. If you have not read that tutorial yet, you should read it before proceeding with this notebook.
BigQuery is a serverless, highly scalable, and cost-effective multi-cloud data warehouse designed for business agility. TFX can be used to read training data from BigQuery and to
publish the trained model to BigQuery.
Set up
If you have completed
Simple TFX Pipeline for Vertex Pipelines Tutorial,
you will have a working GCP project and a GCS bucket and that is all you need
for this notebook. Please read the preliminary tutorial first if you missed it.
Note: By default the Vertex Pipelines uses the default GCE VM service account of
format [project-number]-compute@developer.gserviceaccount.com. You need to
give a permission to use BigQuery to this account to access BigQuery in the
pipeline. Add BigQuery User role to the account.
Please see
Vertex documentation
to learn more about service accounts and IAM configuration.
Each learning objective will correspond to a #TODO in this student lab notebook -- try to complete this notebook first and then review the solution notebook.
Install python packages
You will install required Python packages including TFX and KFP to author ML
pipelines and submit jobs to Vertex Pipelines.
End of explanation
"""


import tensorflow as tf
print('TensorFlow version: {}'.format(tf.__version__))
from tfx import v1 as tfx
print('TFX version: {}'.format(tfx.__version__))
import kfp
print('KFP version: {}'.format(kfp.__version__))

"""
Explanation: Restart the kernel
Please ignore any incompatibility warnings and errors. Restart the kernel to use updated packages. (On the Notebook menu, select Kernel > Restart Kernel > Restart).
Check the package versions.
End of explanation
"""


GOOGLE_CLOUD_PROJECT = ''         # <--- ENTER THIS
GOOGLE_CLOUD_PROJECT_NUMBER = ''  # <--- ENTER THIS
GOOGLE_CLOUD_REGION = ''          # <--- ENTER THIS
GCS_BUCKET_NAME = ''              # <--- ENTER THIS

if not (GOOGLE_CLOUD_PROJECT and  GOOGLE_CLOUD_PROJECT_NUMBER and GOOGLE_CLOUD_REGION and GCS_BUCKET_NAME):
    from absl import logging
    logging.error('Please set all required parameters.')

"""
Explanation: Set up variables
You will set up some variables used to customize the pipelines below. Following
information is required:

GCP Project id and number. See
Identifying your project id and number.
GCP Region to run pipelines. For more information about the regions that
Vertex Pipelines is available in, see the
Vertex AI locations guide.
Google Cloud Storage Bucket to store pipeline outputs.

Enter required values in the cell below before running it.
End of explanation
"""


!gcloud config set project {GOOGLE_CLOUD_PROJECT}

PIPELINE_NAME = 'penguin-bigquery'

# Path to various pipeline artifact.
PIPELINE_ROOT = 'gs://{}/pipeline_root/{}'.format(
    GCS_BUCKET_NAME, PIPELINE_NAME)

# Paths for users' Python module.
MODULE_ROOT = 'gs://{}/pipeline_module/{}'.format(
    GCS_BUCKET_NAME, PIPELINE_NAME)

# Paths for users' data.
DATA_ROOT = # TODO 1: Your code here

# This is the path where your model will be pushed for serving.
SERVING_MODEL_DIR = 'gs://{}/serving_model/{}'.format(
    GCS_BUCKET_NAME, PIPELINE_NAME)

print('PIPELINE_ROOT: {}'.format(PIPELINE_ROOT))

"""
Explanation: Set gcloud to use your project.
End of explanation
"""


%%bigquery --project {GOOGLE_CLOUD_PROJECT}
SELECT *
FROM `tfx-oss-public.palmer_penguins.palmer_penguins`
LIMIT 5

"""
Explanation: Create a pipeline
TFX pipelines are defined using Python APIs as you did in
Simple TFX Pipeline for Vertex Pipelines Tutorial.
You previously used CsvExampleGen which reads data from a CSV file. In this
notebook, you will use
BigQueryExampleGen
component which reads data from BigQuery.
Prepare BigQuery query
You will use the same
Palmer Penguins dataset. However, you will read it from a BigQuery table
tfx-oss-public.palmer_penguins.palmer_penguins which is populated using the
same CSV file.
End of explanation
"""


QUERY = "SELECT * FROM `tfx-oss-public.palmer_penguins.palmer_penguins`"

"""
Explanation: All features were already normalized to 0~1 except species which is the
label. You will build a classification model which predicts the species of
penguins.
BigQueryExampleGen requires a query to specify which data to fetch. Because
You will use all the fields of all rows in the table, the query is quite simple.
You can also specify field names and add WHERE conditions as needed according
to the
BigQuery Standard SQL syntax.
End of explanation
"""


_trainer_module_file = 'penguin_trainer.py'

%%writefile {_trainer_module_file}

# Copied from https://www.tensorflow.org/tfx/tutorials/tfx/penguin_simple

from typing import List
from absl import logging
import tensorflow as tf
from tensorflow import keras
from tensorflow_transform.tf_metadata import schema_utils

from tfx import v1 as tfx
from tfx_bsl.public import tfxio

from tensorflow_metadata.proto.v0 import schema_pb2

_FEATURE_KEYS = [
    'culmen_length_mm', 'culmen_depth_mm', 'flipper_length_mm', 'body_mass_g'
]
_LABEL_KEY = 'species'

_TRAIN_BATCH_SIZE = 20
_EVAL_BATCH_SIZE = 10

# Since you're not generating or creating a schema, you will instead create
# a feature spec.  Since there are a fairly small number of features this is
# manageable for this dataset.
_FEATURE_SPEC = {
    **{
        feature: tf.io.FixedLenFeature(shape=[1], dtype=tf.float32)
           for feature in _FEATURE_KEYS
       },
    _LABEL_KEY: tf.io.FixedLenFeature(shape=[1], dtype=tf.int64)
}


def _input_fn(file_pattern: List[str],
              data_accessor: tfx.components.DataAccessor,
              schema: schema_pb2.Schema,
              batch_size: int) -> tf.data.Dataset:
  """Generates features and label for training.

  Args:
    file_pattern: List of paths or patterns of input tfrecord files.
    data_accessor: DataAccessor for converting input to RecordBatch.
    schema: schema of the input data.
    batch_size: representing the number of consecutive elements of returned
      dataset to combine in a single batch

  Returns:
    A dataset that contains (features, indices) tuple where features is a
      dictionary of Tensors, and indices is a single Tensor of label indices.
  """
  return data_accessor.tf_dataset_factory(
      file_pattern,
      tfxio.TensorFlowDatasetOptions(
          batch_size=batch_size, label_key=_LABEL_KEY),
      schema=schema).repeat()


def _make_keras_model() -> tf.keras.Model:
  """Creates a DNN Keras model for classifying penguin data.

  Returns:
    A Keras Model.
  """
  # The model below is built with Functional API, please refer to
  # https://www.tensorflow.org/guide/keras/overview for all API options.
  inputs = [keras.layers.Input(shape=(1,), name=f) for f in _FEATURE_KEYS]
  d = keras.layers.concatenate(inputs)
  for _ in range(2):
    d = keras.layers.Dense(8, activation='relu')(d)
  outputs = keras.layers.Dense(3)(d)

  model = keras.Model(inputs=inputs, outputs=outputs)
  model.compile(
      optimizer=keras.optimizers.Adam(1e-2),
      loss=tf.keras.losses.SparseCategoricalCrossentropy(from_logits=True),
      metrics=[keras.metrics.SparseCategoricalAccuracy()])

  model.summary(print_fn=logging.info)
  return model


# TFX Trainer will call this function.
def run_fn(fn_args: tfx.components.FnArgs):
  """Train the model based on given args.

  Args:
    fn_args: Holds args used to train the model as name/value pairs.
  """

  # This schema is usually either an output of SchemaGen or a manually-curated
  # version provided by pipeline author. A schema can also derived from TFT
  # graph if a Transform component is used. In the case when either is missing,
  # `schema_from_feature_spec` could be used to generate schema from very simple
  # feature_spec, but the schema returned would be very primitive.
  schema = schema_utils.schema_from_feature_spec(_FEATURE_SPEC)

  train_dataset = _input_fn(
      fn_args.train_files,
      fn_args.data_accessor,
      schema,
      batch_size=_TRAIN_BATCH_SIZE)
  eval_dataset = _input_fn(
      fn_args.eval_files,
      fn_args.data_accessor,
      schema,
      batch_size=_EVAL_BATCH_SIZE)

  model = _make_keras_model()
  model.fit(
      train_dataset,
      steps_per_epoch=fn_args.train_steps,
      validation_data=eval_dataset,
      validation_steps=fn_args.eval_steps)

  # The result of the training should be saved in `fn_args.serving_model_dir`
  # directory.
  model.save(fn_args.serving_model_dir, save_format='tf')

"""
Explanation: Write model code.
You will use the same model code as in the
Simple TFX Pipeline Tutorial.
End of explanation
"""


!gsutil cp {_trainer_module_file} {MODULE_ROOT}/

"""
Explanation: Copy the module file to GCS which can be accessed from the pipeline components.
Because model training happens on GCP, you need to upload this model definition.
Otherwise, you might want to build a container image including the module file
and use the image to run the pipeline.
End of explanation
"""


from typing import List, Optional

def _create_pipeline(pipeline_name: str, pipeline_root: str, query: str,
                     module_file: str, serving_model_dir: str,
                     beam_pipeline_args: Optional[List[str]],
                     ) -> tfx.dsl.Pipeline:
  """Creates a TFX pipeline using BigQuery."""

  # NEW: Query data in BigQuery as a data source.
  example_gen = # TODO 2: Your code here

  # Uses user-provided Python function that trains a model.
  trainer = tfx.components.Trainer(
      module_file=module_file,
      examples=example_gen.outputs['examples'],
      train_args=tfx.proto.TrainArgs(num_steps=100),
      eval_args=tfx.proto.EvalArgs(num_steps=5))

  # Pushes the model to a file destination.
  pusher = tfx.components.Pusher(
      model=trainer.outputs['model'],
      push_destination=tfx.proto.PushDestination(
          filesystem=tfx.proto.PushDestination.Filesystem(
              base_directory=serving_model_dir)))

  components = [
      example_gen,
      trainer,
      pusher,
  ]

  return tfx.dsl.Pipeline(
      pipeline_name=pipeline_name,
      pipeline_root=pipeline_root,
      components=components,
      # NEW: `beam_pipeline_args` is required to use BigQueryExampleGen.
      beam_pipeline_args=beam_pipeline_args)

"""
Explanation: Write a pipeline definition
You will define a function to create a TFX pipeline. You need to use
BigQueryExampleGen which takes query as an argument. One more change from
the previous notebook is that you need to pass beam_pipeline_args which is
passed to components when they are executed. You will use beam_pipeline_args
to pass additional parameters to BigQuery.
End of explanation
"""


import os

# You need to pass some GCP related configs to BigQuery. This is currently done
# using `beam_pipeline_args` parameter.
BIG_QUERY_WITH_DIRECT_RUNNER_BEAM_PIPELINE_ARGS = [
   '--project=' + GOOGLE_CLOUD_PROJECT,
   '--temp_location=' + os.path.join('gs://', GCS_BUCKET_NAME, 'tmp'),
   ]

PIPELINE_DEFINITION_FILE = PIPELINE_NAME + '_pipeline.json'

runner = tfx.orchestration.experimental.KubeflowV2DagRunner(
    config=tfx.orchestration.experimental.KubeflowV2DagRunnerConfig(),
    output_filename=PIPELINE_DEFINITION_FILE)
_ = runner.run(
    _create_pipeline(
        pipeline_name=PIPELINE_NAME,
        pipeline_root=PIPELINE_ROOT,
        query=QUERY,
        module_file=os.path.join(MODULE_ROOT, _trainer_module_file),
        serving_model_dir=SERVING_MODEL_DIR,
        beam_pipeline_args=BIG_QUERY_WITH_DIRECT_RUNNER_BEAM_PIPELINE_ARGS))

"""
Explanation: Run the pipeline on Vertex Pipelines.
You will use Vertex Pipelines to run the pipeline as you did in
Simple TFX Pipeline for Vertex Pipelines Tutorial.
You also need to pass beam_pipeline_args for the BigQueryExampleGen. It
includes configs like the name of the GCP project and the temporary storage for
the BigQuery execution.
End of explanation
"""


# docs_infra: no_execute
from google.cloud import aiplatform
from google.cloud.aiplatform import pipeline_jobs
import logging
logging.getLogger().setLevel(logging.INFO)

aiplatform.init(project=GOOGLE_CLOUD_PROJECT, location=GOOGLE_CLOUD_REGION)

job = pipeline_jobs.PipelineJob(template_path=PIPELINE_DEFINITION_FILE,
                                display_name=PIPELINE_NAME)
# Submit the job
# TODO 3: Your code here

"""
Explanation: The generated definition file can be submitted using kfp client.
End of explanation
"""


