whole_func_string: function parseBedFeature(f): Gene {
    var position = new ContigInterval(f.contig, f.start, f.stop),
        x = f.rest.split('\t');
  
    // if no id, generate randomly for unique storage
    var id = x[0] ? x[0] : position.toString(); // e.g. ENST00000359597
    var score = x[1] ? parseInt(x[1]) : 1000; // number from 0-1000
    var strand =  strToStrand(x[2]); // either +, - or .
    var codingRegion = (x[3] && x[4]) ? new Interval(Number(x[3]), Number(x[4])) :new Interval(f.start, f.stop);
    var geneId =  x[9] ? x[9] : id;
    var name =  x[10] ? x[10] : "";
  
    // parse exons
    var exons = [];
    if (x[7] && x[8]) {
      // exons arrays sometimes have trailing commas
      var exonLengths = x[7].replace(/,*$/, '').split(',').map(Number),
        exonStarts = x[8].replace(/,*$/, '').split(',').map(Number);
  
      exons = _.zip(exonStarts, exonLengths)
               .map(function([start, length]) {
                 return new Interval(f.start + start, f.start + start + length);
               });
    }
  
    return new Gene({
      position,
      id: id,
      score: score,
      strand: strand,
      codingRegion: codingRegion,
      geneId: geneId,
      name: name,
      exons
    });
  }
func_code_string: function parseBedFeature(f): Gene {
    var position = new ContigInterval(f.contig, f.start, f.stop),
        x = f.rest.split('\t');
  
    // if no id, generate randomly for unique storage
    var id = x[0] ? x[0] : position.toString(); // e.g. ENST00000359597
    var score = x[1] ? parseInt(x[1]) : 1000; // number from 0-1000
    var strand =  strToStrand(x[2]); // either +, - or .
    var codingRegion = (x[3] && x[4]) ? new Interval(Number(x[3]), Number(x[4])) :new Interval(f.start, f.stop);
    var geneId =  x[9] ? x[9] : id;
    var name =  x[10] ? x[10] : "";
  
    // parse exons
    var exons = [];
    if (x[7] && x[8]) {
      // exons arrays sometimes have trailing commas
      var exonLengths = x[7].replace(/,*$/, '').split(',').map(Number),
        exonStarts = x[8].replace(/,*$/, '').split(',').map(Number);
  
      exons = _.zip(exonStarts, exonLengths)
               .map(function([start, length]) {
                 return new Interval(f.start + start, f.start + start + length);
               });
    }
  
    return new Gene({
      position,
      id: id,
      score: score,
      strand: strand,
      codingRegion: codingRegion,
      geneId: geneId,
      name: name,
      exons
    });
  }
func_documentation_string: The fields are described at http://genome.ucsc.edu/FAQ/FAQformat#format1 Fields 4-12 are optional