EC2 Default User commited on
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fc382c2
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1 Parent(s): 47dc5e5

Update unzip code

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Files changed (1) hide show
  1. oas-paired-sequence-data.py +17 -16
oas-paired-sequence-data.py CHANGED
@@ -122,20 +122,21 @@ class OasPairedSequenceData(datasets.GeneratorBasedBuilder):
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  def _generate_examples(self, filepaths):
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  for filepath in filepaths:
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- with gzip.open(open(filepath, "rb"), "rt", encoding="utf-8") as f:
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- reader = csv.reader(f, delimiter=",")
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- for key, row in enumerate(reader):
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- if key < 2:
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- continue
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- else:
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- yield key - 2, {
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- "sequence_alignment_aa_heavy": row[10],
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- "cdr1_aa_heavy": row[35],
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- "cdr2_aa_heavy": row[39],
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- "cdr3_aa_heavy": row[43],
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- "sequence_alignment_aa_light": row[100],
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- "cdr1_aa_light": row[123],
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- "cdr2_aa_light": row[127],
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- "cdr3_aa_light": row[131],
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- }
 
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  def _generate_examples(self, filepaths):
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  for filepath in filepaths:
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+ with gzip.open(filepath) as z:
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+ with open(z, "r") as f:
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+ reader = csv.reader(f, delimiter=",")
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+ for key, row in enumerate(reader):
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+ if key < 2:
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+ continue
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+ else:
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+ yield key - 2, {
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+ "sequence_alignment_aa_heavy": row[10],
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+ "cdr1_aa_heavy": row[35],
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+ "cdr2_aa_heavy": row[39],
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+ "cdr3_aa_heavy": row[43],
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+ "sequence_alignment_aa_light": row[100],
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+ "cdr1_aa_light": row[123],
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+ "cdr2_aa_light": row[127],
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+ "cdr3_aa_light": row[131],
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+ }
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