switch to csv

.gitattributes

@@ -62,3 +62,7 @@ human.parquet filter=lfs diff=lfs merge=lfs -text
 mouse_BALB_c.parquet filter=lfs diff=lfs merge=lfs -text
 mouse_C57BL_6.parquet filter=lfs diff=lfs merge=lfs -text
 rat_SD.parquet filter=lfs diff=lfs merge=lfs -text
+human.csv filter=lfs diff=lfs merge=lfs -text
+mouse_BALB_c.csv filter=lfs diff=lfs merge=lfs -text
+mouse_C57BL_6.csv filter=lfs diff=lfs merge=lfs -text
+rat_SD.csv filter=lfs diff=lfs merge=lfs -text

README.md

@@ -6,13 +6,13 @@ task_categories:
 license: cc-by-4.0
 configs:
 - config_name: human
-  data_files: "human.parquet"
+  data_files: "human.csv"
 - config_name: rat_SD
-  data_files: "rat_SD.parquet"
+  data_files: "rat_SD.csv"
 - config_name: mouse_BALB_c
-  data_files: "mouse_BALB_c.parquet"
+  data_files: "mouse_BALB_c.csv"
 - config_name: mouse_C57BL_6
-  data_files: "mouse_C57BL_6.parquet"
+  data_files: "mouse_C57BL_6.csv"
 ---
 
 # Dataset Card for OAS Paired Sequence Data

human.csv

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:143c9ad2f008ffc36e1ad1b85567c1e61980305af5922223384944d2fed90dde
+size 520174995

mouse_BALB_c.csv

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:a1ddbf5109598a3917e80c13491d9a6e44ac2fb0f6ae73e85a9317426f4c8c39
+size 5102176

mouse_C57BL_6.csv

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:419efc54b5961543713f66048dee1d8944de462469ebc36ba619fcc975c7e332
+size 3428906

rat_SD.csv

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:c999367579296ad58beaadc22bc0c62729ecb43da828278ccf70aa36b4c3fd4a
+size 16674377

src/download_and_process_data.py

@@ -42,7 +42,7 @@ for species in species_list:
         print(f"{species} output summary:")
         print(species_df.head())
         print(species_df.shape)
-        output_file_name = os.path.join(output_path, species + ".parquet")
+        output_file_name = os.path.join(output_path, species + ".csv")
         print(f"Creating {output_file_name}")
-        species_df.to_parquet(output_file_name, compression="gzip", index=False)
+        species_df.to_csv(output_file_name, index=False)