.. Copyright 2017 EMBL-European Bioinformatics Institute

   Licensed under the Apache License, Version 2.0 (the "License");
   you may not use this file except in compliance with the License.
   You may obtain a copy of the License at

       http://www.apache.org/licenses/LICENSE-2.0

   Unless required by applicable law or agreed to in writing, software
   distributed under the License is distributed on an "AS IS" BASIS,
   WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
   See the License for the specific language governing permissions and
   limitations under the License.

.. MuG - FastQ Pipelines documentation master file, created by
   sphinx-quickstart on Tue Feb 28 10:22:01 2017.
   You can adapt this file completely to your liking, but it should at least
   contain the root `toctree` directive.

MuG - FASTQ Pipelines's documentation!
======================================

.. toctree::
   :maxdepth: 2
   :caption: Contents:

   install
   full_installation
   pipelines
   tools
   common
   fastqfunctions
   testing
   settingUpTravis
   docker
   testData_ChIPSeq
   testData_MNaseSeq
   testData_RNASeq
   testData_WGBS
   adr
   license

.. toctree::
   :maxdepth: 2
   :caption: Test Datasets:

   tests_hic

Indices and tables
==================

* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`

.. See the NOTICE file distributed with this work for additional information
   regarding copyright ownership.

   Licensed under the Apache License, Version 2.0 (the "License");
   you may not use this file except in compliance with the License.
   You may obtain a copy of the License at

       http://www.apache.org/licenses/LICENSE-2.0

   Unless required by applicable law or agreed to in writing, software
   distributed under the License is distributed on an "AS IS" BASIS,
   WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
   See the License for the specific language governing permissions and
   limitations under the License.

.. MuG - FastQ Pipelines documentation master file, created by
   sphinx-quickstart on Tue Feb 28 10:22:01 2017.
   You can adapt this file completely to your liking, but it should at least
   contain the root `toctree` directive.

MuG - FASTQ Pipelines's documentation!
======================================

.. toctree::
   :maxdepth: 2
   :caption: Contents:

   install
   full_installation
   pipelines
   tools
   common
   fastqfunctions
   testing
   settingUpTravis
   docker
   testData_ChIPSeq
   testData_MNaseSeq
   testData_RNASeq
   testData_WGBS
   adr
   license

.. toctree::
   :maxdepth: 2
   :caption: Test Datasets:

   tests_hic

Indices and tables
==================

* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`

Update to the legal notice
Update to the  legal notice
