====================
Commands and scripts
====================

The MRtrix3 software package includes a suite of tools for image analysis and visualisation. With the exception of :ref:`mrview` and :ref:`shview`, all MRtrix executables are designed to be run via a terminal using a consistent :ref:`command-line interface <command-line-usage_>`__. While many of the tools and features are discussed within tutorials found in this documentation, a comprehensive list of MRtrix3 :ref:`commands`<list-of-mrtrix3-commands_> and :ref:`scripts`<list-of-mrtrix3-scripts_> can be found in the reference section. This list provides links to the help page (manual) for each executable, which can also be accessed by typing the `-help` option after any executable on the terminal.

====================
Commands and scripts
====================

The MRtrix3 software package includes a suite of tools for image analysis and visualisation. With the exception of :ref:`mrview` and :ref:`shview`, all MRtrix executables are designed to be run via a terminal using a consistent :ref:`command-line interface <command-line-usage_>`_. While many of the tools and features are discussed within tutorials found in this documentation, a comprehensive list of MRtrix3 :ref:`commands <list-of-mrtrix3-commands>`_ and :ref:`scripts <list-of-mrtrix3-scripts>`_ can be found in the reference section. This list provides links to the help page (manual) for each executable, which can also be accessed by typing the `-help` option after any executable on the terminal.

Fix issues with previous commit
Fix issues with previous commit
