<?xml version="1.0"?>
<tool_dependency>
    <package name="infernal" version="1.1">
        <repository name="package_infernal_1_1" owner="iuc" />
    </package>
    <package name="genometools" version="1.5.7">
        <repository name="package_genometools_1_5_7" owner="bebatut" />
    </package>
    <package name="reago" version="1.1">
        <install version="1.0">
            <actions>
                <action type="shell_command">git clone https://github.com/chengyuan/reago-1.1</action>
                <action type="shell_command">mv reago-1.1 $INSTALL_DIR/</action>
                <action type="set_environment">
                    <environment_variable name="REAGO_DIR" action="set_to">$INSTALL_DIR/reago-1.1/</environment_variable>
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                </action>
            </actions>
        </install>
    </package>
</tool_dependency>
<?xml version="1.0"?>
<tool_dependency>
    <package name="infernal" version="1.1">
        <repository name="package_infernal_1_1" owner="iuc" />
    </package>
    <package name="genometools" version="1.5.7">
        <repository name="package_genometools_1_5_7" owner="bebatut" />
    </package>
    <package name="reago" version="1.1">
        <install version="1.0">
            <actions>
                <action type="shell_command">git clone https://github.com/chengyuan/reago-1.1</action>
                <action type="make_directory">$INSTALL_DIR/reago-1.1/</action>
                <action type="move_directory_files">
                    <source_directory>reago-1.1/</source_directory>
                    <destination_directory>$INSTALL_DIR/reago-1.1/</destination_directory>
                </action>
                <action type="set_environment">
                    <environment_variable name="REAGO_DIR" action="set_to">$INSTALL_DIR/reago-1.1/</environment_variable>
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                </action>
            </actions>
        </install>
    </package>
</tool_dependency>
Change move of reago bin
Change move of reago bin
