<?xml version="1.0" encoding="UTF-8"?>
<package name="VariantEval">
  <executable name="VariantEval">
    <main-class name="org.broadinstitute.sting.gatk.CommandLineGATK" />
    <resource-bundle file="StingText.properties" />
    <dependencies>
      <class name="org.broadinstitute.sting.gatk.walkers.varianteval.VariantEvalWalker" />
      <class name="org.broadinstitute.sting.gatk.walkers.varianteval.CountVariants" />
      <class name="org.broadinstitute.sting.gatk.walkers.varianteval.CompOverlap" />
      <class name="org.broadinstitute.sting.gatk.walkers.varianteval.GenotypeConcordance" />
      <class name="org.broadinstitute.sting.gatk.walkers.varianteval.MendelianViolationEvaluator" />
      <class name="org.broadinstitute.sting.gatk.walkers.varianteval.TiTvVariantEvaluator" />
      <class name="org.broadinstitute.sting.gatk.walkers.varianteval.ValidationRate" />
      <class name="org.broadinstitute.sting.gatk.walkers.varianteval.VariantQualityScore" />
    </dependencies>
  </executable>
</package>

<?xml version="1.0" encoding="UTF-8"?>
<package name="VariantEval">
  <executable name="VariantEval">
    <main-class name="org.broadinstitute.sting.gatk.CommandLineGATK" />
    <resource-bundle file="StingText.properties" />
    <dependencies>
      <class name="org.broadinstitute.sting.gatk.walkers.varianteval.VariantEvalWalker" />
      <class name="org.broadinstitute.sting.gatk.walkers.varianteval.CountVariants" />
      <class name="org.broadinstitute.sting.gatk.walkers.varianteval.CompOverlap" />
      <class name="org.broadinstitute.sting.gatk.walkers.varianteval.GenotypeConcordance" />
      <class name="org.broadinstitute.sting.gatk.walkers.varianteval.MendelianViolationEvaluator" />
      <class name="org.broadinstitute.sting.gatk.walkers.varianteval.TiTvVariantEvaluator" />
      <class name="org.broadinstitute.sting.gatk.walkers.varianteval.ValidationRate" />
      <class name="org.broadinstitute.sting.gatk.walkers.varianteval.VariantQualityScore" />
      <class name="org.broadinstitute.sting.gatk.walkers.varianteval.CountFunctionalClasses" />
    </dependencies>
  </executable>
</package>

Add CountFunctionalVariants to local release (for firehose)
Add CountFunctionalVariants to local release (for firehose)



git-svn-id: 4561c0a8f080806b19201efb9525134c00b76d40@3814 348d0f76-0448-11de-a6fe-93d51630548a
