<?xml version="1.0"?>
<tool_dependency>
    <package name="bowtie2" version="2.2.5">
        <repository name="package_bowtie_2_2_5" owner="iuc" />
    </package>
    <package name="metaphlan2" version="2.0">
        <install version="1.0">
            <actions>
                <action type="download_by_url">https://bitbucket.org/biobakery/metaphlan2/get/default.zip</action>
                <action type="move_directory_files">
                    <source_directory>.</source_directory>
                    <destination_directory>$INSTALL_DIR</destination_directory>
                </action>
                <action type="set_environment">
                    <environment_variable name="METAPHLAN2_DIR" action="set_to">$INSTALL_DIR</environment_variable>
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                </action>
            </actions>
        </install>
        <readme></readme>
    </package>
</tool_dependency>
<?xml version="1.0"?>
<tool_dependency>
    <package name="bowtie2" version="2.2.4">
        <repository name="bowtie2" owner="devteam" />
    </package>
    <package name="metaphlan2" version="2.0">
        <install version="1.0">
            <actions>
                <action type="download_by_url">https://bitbucket.org/biobakery/metaphlan2/get/default.zip</action>
                <action type="move_directory_files">
                    <source_directory>.</source_directory>
                    <destination_directory>$INSTALL_DIR</destination_directory>
                </action>
                <action type="set_environment">
                    <environment_variable name="METAPHLAN2_DIR" action="set_to">$INSTALL_DIR</environment_variable>
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                </action>
            </actions>
        </install>
        <readme></readme>
    </package>
</tool_dependency>
Change bowtie dependency for metaphlan2
Change bowtie dependency for metaphlan2
