<tool_dependency>
    <package name="Fido" version="f63cd47b8414f87d57b8c1b713d34a04b29c7aee">
        <install version="1.0">
            <actions>   
                <action type="shell_command">git clone --recursive https://github.com/hendrikweisser/Fido.git</action>
                <action type="shell_command">git reset --hard f63cd47b8414f87d57b8c1b713d34a04b29c7aee</action>
                <action type="make_directory">build</action>
                <action type="change_directory">build</action>
                <action type="shell_command">cmake ..</action>
                <action type="shell_command">make</action>
                <action type="move_file">
                    <source>Fido</source>
                    <destination>$INSTALL_DIR/bin</destination>
                </action>
                <action type="move_file">
                    <source>FidoChooseParameters</source>
                    <destination>$INSTALL_DIR/bin</destination>
                </action>
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                    <environment_variable name="FIDO_ROOT_PATH" action="set_to">$INSTALL_DIR</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
            Fido is a free software tool used in the area of computational proteomics. It calculates posterior probabilities for protein
            identifications based on database searches of tandem mass spectra. The website for Fido is here: http://noble.gs.washington.edu/proj/fido/
        </readme>
    </package>
</tool_dependency>

Add Fido package. A protein identification program for MS data.
Add Fido package. A protein identification program for MS data.
