<!DOCTYPE html>
<html>
<head>
  <title>Pokefinder</title>
  <link rel="stylesheet" href="css/bootstrap.css" type="text/css" />
  <link rel="stylesheet" href="css/style.css" type="text/css" />
  <script src="js/save.js" type="text/javascript"></script>
</head>
<body class="padding">
  <br>
  <button onclick="save()">Save</button>
  <button onclick="load_()">Load</button>
  <br><br>
  <input type="checkbox" value="1-1" /> Checkbox 1<br />
  <input type="checkbox" value="1-2" /> Checkbox 2<br />
  <input type="checkbox" value="1-3" /> Checkbox 3<br />
  <input type="checkbox" value="1-4" /> Checkbox 4<br />
  <input type="checkbox" value="1-5" /> Checkbox 5<br /> 
</body>
<footer>

</footer>
</html>

<!DOCTYPE html>
<html>
<head>
  <title>Pokefinder</title>
  <link rel="stylesheet" href="css/bootstrap.css" type="text/css" />
  <link rel="stylesheet" href="css/style.css" type="text/css" />
</head>
<body class="padding">
  <br>
  <button onclick="save()">Save</button>
  <button onclick="load_()">Load</button>
  <br><br>
  <input type="checkbox" value="1-1" /> Checkbox 1<br />
  <input type="checkbox" value="1-2" /> Checkbox 2<br />
  <input type="checkbox" value="1-3" /> Checkbox 3<br />
  <input type="checkbox" value="1-4" /> Checkbox 4<br />
  <input type="checkbox" value="1-5" /> Checkbox 5<br /> 

  <script src="js/save.js" type="text/javascript"></script>
</body>
<footer>

</footer>
</html>

Move script element to bottom of body
Move script element to bottom of body