{% include head.html %}
<body>
  {% include header.html %}
  <main class="page-content" aria-label="Content">
    <div class="wrapper">
      {{ content }}
    </div>
  </main>
  {% include footer.html %}

  <!-- jQuery -->
  <script src="https://ajax.googleapis.com/ajax/libs/jquery/1.12.4/jquery.min.js"></script>
  <!-- Bootstrap -->
  <script src="{{ site.url }}/assets/bootstrap/js/bootstrap.min.js"></script>
  <!-- JS -->
  <script src="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/js/bootstrap.min.js" integrity="sha384-Tc5IQib027qvyjSMfHjOMaLkfuWVxZxUPnCJA7l2mCWNIpG9mGCD8wGNIcPD7Txa" crossorigin="anonymous"></script>
</body>
</html>

{% include head.html %}
<body>
  {% include header.html %}
  <main class="page-content" aria-label="Content">
    <div class="wrapper">
      {{ content }}
    </div>
  </main>
  {% include footer.html %}

  <!-- jQuery -->
  <script src="https://ajax.googleapis.com/ajax/libs/jquery/1.12.4/jquery.min.js"></script>
  <!-- Bootstrap -->
  <script src="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/js/bootstrap.min.js" integrity="sha384-Tc5IQib027qvyjSMfHjOMaLkfuWVxZxUPnCJA7l2mCWNIpG9mGCD8wGNIcPD7Txa" crossorigin="anonymous"></script>
  <!-- JS -->
  <script src="{{ site.url }}/assets/js/main.js"></script>
</body>
</html>

Fix issue for correct link to the main JS file
Fix issue for correct link to the main JS file
