pcawg-germline-clone:
  git.latest:
    - rev: master
    - force_reset: True
    - name: https://github.com/llevar/pcawg-germline.git
    - target: /opt/pcawg-germline
    - submodules: True
    
/opt/airflow/dags:
  file.symlink:
    - target: /opt/pcawg-germline/workflows/
    - user: airflow
    - group: airflow
    - mode: 755
    - force: True
    - makedirs: True
 
/tmp/pcawg-germline/scripts:
  file.symlink:
    - target: /opt/pcawg-germline/scripts/
    - user: root
    - group: root
    - mode: 755
    - force: True
    - makedirs: True
pcawg-germline-clone:
  git.latest:
    - rev: master
    - force_reset: True
    - name: https://github.com/llevar/pcawg-germline.git
    - target: /opt/pcawg-germline
    - submodules: True
    
/opt/airflow/dags/pcawg-germline:
  file.symlink:
    - target: /opt/pcawg-germline/workflows/
    - user: airflow
    - group: airflow
    - mode: 755
    - force: True
    - makedirs: True
 
/tmp/pcawg-germline/scripts:
  file.symlink:
    - target: /opt/pcawg-germline/scripts/
    - user: root
    - group: root
    - mode: 755
    - force: True
    - makedirs: True
Change symlink to point inside the dags folder rather at the dags folder, to support workflow definitions from multiple repositories.
Change symlink to point inside the dags folder rather at the dags folder, to support workflow definitions from multiple repositories.

llevar/germline-regenotyper,llevar/germline-regenotyper