{
    "__default__":
    {
        "time" : "30",
        "cores" : 1,
        "memory": "512",
        "disk": "6000",
        "name": "{rule}.{wildcards}",
        "stdout": "log/{rule}.{wildcards}.%j.out",
        "stderr": "log/{rule}.{wildcards}.%j.err"
    },
    "map_reads": {
        "time": "180",
        "cores": 2,
        "memory": "25600"
    },
    "map_chunked_reads_with_mrsfast": {
        "time": "180",
        "cores": 1,
        "memory": "8192"
    },
	"convert_mapped_chunked_reads_from_sam_to_bam": {
		"memory": "4096"
    },
    "merge_alignments_by_sample": {
        "time": "120"
    },
    "index_reference_for_bwa": {
        "memory": "8000"
    }
}

{
    "__default__":
    {
        "time" : "00:30:00",
        "cores" : 1,
        "memory": "512",
        "disk": "6000",
        "name": "{rule}.{wildcards}",
        "stdout": "log/{rule}.{wildcards}.%j.out",
        "stderr": "log/{rule}.{wildcards}.%j.err"
    },
    "map_reads": {
        "time": "03:00:00",
        "cores": 2,
        "memory": "25600"
    },
    "map_chunked_reads_with_mrsfast": {
        "time": "03:00:00",
        "cores": 1,
        "memory": "8192"
    },
	"convert_mapped_chunked_reads_from_sam_to_bam": {
		"memory": "4096"
    },
    "merge_alignments_by_sample": {
        "time": "02:00:00"
    },
    "index_reference_for_bwa": {
        "memory": "8000"
    }
}

Define job time requirements using standard SLURM syntax
Define job time requirements using standard SLURM syntax
