{
  "name": "annotated-code",
  "description": "Short, heavily annotated JavaScript programs.",
  "author": "Mary Rose Cook <maryrosecook@maryrosecook.com> (http://maryrosecook.com/)",
  "version": "0.1.0",

  "repository": {
    "type": "git",
    "url": "https://github.com/maryrosecook/annotated-code.git"
  },

  "scripts": {
    "docs": "docco --output space-invaders/docs space-invaders/*.js; docco --output circles-bouncing-off-lines/docs circles-bouncing-off-lines/*.js;"
  },

  "devDependencies": {
    "docco": "0.6.3"
  }
}

{
  "name": "annotated-code",
  "description": "Short, heavily annotated JavaScript programs.",
  "author": "Mary Rose Cook <maryrosecook@maryrosecook.com> (http://maryrosecook.com/)",
  "version": "0.1.0",

  "repository": {
    "type": "git",
    "url": "https://github.com/maryrosecook/annotated-code.git"
  },

  "scripts": {
    "docs": "docco space-invaders/*.js --output space-invaders/docs; docco circles-bouncing-off-lines/*.js --output circles-bouncing-off-lines/docs"
  },

  "devDependencies": {
    "docco": "0.6.3"
  }
}

Put path to code first in doc gen script
Put path to code first in doc gen script