{
	"contig_names": ["1", "2", "3", "4", "5", "6", "7", "8", "9", "10",
                "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22"],
	"reference_location": "/reference/genome.fa",
	"bgzip": {
		"path": "/usr/local/bin/gzip",
		"flags": ""
	},
	"tabix": {
		"path": "/usr/local/bin/tabix",
		"flags": "-f -p vcf"
	},
	"rsync": {
		"flags": "-a -v --remove-source-files"
	},
	"freebayes": {
		"path": "/bin/freebayes"
	}
}
{
	"contig_names": ["1", "2", "3", "4", "5", "6", "7", "8", "9", "10",
                "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22"],
	"reference_location": "/reference/genome.fa",
	"bgzip": {
		"path": "/usr/local/bin/bgzip",
		"flags": ""
	},
	"tabix": {
		"path": "/usr/local/bin/tabix",
		"flags": "-f -p vcf"
	},
	"rsync": {
		"flags": "-a -v --remove-source-files"
	},
	"freebayes": {
		"path": "/bin/freebayes"
	}
}
Update workflow config to have correct path to bgzip.
Update workflow config to have correct path to bgzip.
