{
	"reference_location": "/reference/genome.fa",
	"tabix": {
		"path": "/usr/local/bin/tabix",
		"flags": "-f -p vcf"
	},
	"rsync": {
		"flags": "-a -v --remove-source-files"
	},
	"delly": {
		"path": "/bin/delly",
		"exclude_template_path": "/opt/delly/excludeTemplates/human.hg19.excl.tsv"
	}
}
{
	"reference_location": "/reference/genome.fa",
	"bgzip": {
		"path": "/usr/local/bin/bgzip",
		"flags": ""
	},
	"tabix": {
		"path": "/usr/local/bin/tabix",
		"flags": "-f -p vcf"
	},
	"rsync": {
		"flags": "-a -v --remove-source-files"
	},
	"delly": {
		"path": "/bin/delly",
		"exclude_template_path": "/opt/delly/excludeTemplates/human.hg19.excl.tsv"
	}
}
Add bgzip configuration to delly config.
Add bgzip configuration to delly config.
