Add to repository.

Add to repository.

set terminal png transparent nointerlace \
    font "lucon.ttf,20" \
    size 1920,1080 nocrop \
    noenhanced \
    background '#FFFFFF'

set output "intro.png"
set encoding utf8

set style line 101 linetype 1 linewidth 5 linecolor rgbcolor '#000000'
set style line 102 linetype 2 linewidth 4 linecolor rgbcolor '#999999'
set style line 103 linetype 3 linewidth 4 linecolor rgbcolor '#A00000'
set style line 104 linetype 4 linewidth 4 linecolor rgbcolor '#FF0000'
set style line 105 linetype 5 linewidth 4 linecolor rgbcolor '#007000'
set style line 106 linetype 6 linewidth 6 linecolor rgbcolor '#00FF00'
set style line 107 linetype 7 linewidth 4 linecolor rgbcolor '#0000A0'
set style line 108 linetype 8 linewidth 4 linecolor rgbcolor '#1E90FF'
set style line 109 linetype 9 linewidth 4 linecolor rgbcolor '#A020F0'

set key off

# TODO: set origin and size as options or calculate.
set origin 0.02,0
set size 0.98,1
set ytics
set xtics
set border
set colorbox
set xrange [-3:3]
set grid xtics
set mxtics
set xlabel "x" font "lucon.ttf,30"

set format y ""
set format x ""
set grid ytics
set mytics
set my2tics
set ylabel "f(x)" font "lucon.ttf,30"
#set ytics nomirror
#set y2tics nomirror
set label 1 "2005-2017 © eigenholser" \
    at screen 0.99,0.014 right font "times.ttf,12"
#set label 2 "f(x) = x^3 + 3x^2 - 13x + 42" at screen 0.21,0.865 left font "times.ttf,30"
#set label 3 "f(x) = α(x^3 + x^2 - 26x + 24) + 2x^2 + 13x + 18" at screen 0.21,0.830 left font "times.ttf,30"
#set title "Cubic polynomials passing through points (-4,50) and (1,40)" font "lucon.ttf,30"

# Greek α symbol is U03B1
f(x) = x**3 + 3*x**2 - 13.0*x + 42
x1 = -6
x2 = 1
x3 = 4
set style line 1 pointtype 7 linecolor rgb '#000000' pointsize 4
plot \
    -120*x - 300 axes x1y1 not with lines linestyle 102, \
    90*x**2 -20*x - 90 axes x1y1 not with lines linestyle 102, \
    12*x**3 - 8*x**2 - 20*x - 100  axes x1y1 not with lines linestyle 102, \
    2*x**4 - 19*x**3 + 3*x**2 + x - 300 axes x1y1 not with lines linestyle 102

error: pathspec 'figures/gnuplot/title-background.gp' did not match any file(s) known to git


Add objects_i:class_fields UT

Add objects_i:class_fields UT

:- begin_tests(objects_i).
:- use_module(u(internal/objects_i)).

test(class_fields) :-

   class_id(Id, citizen_v), !,

   class_fields(_:_, Id, false, false, F1),
   assertion(F1 = [height:_, name:_, sex:_, surname:_, weight:_]),

   class_fields(_:_, Id, false, true, F2),
   assertion(F2 = [class:_, functor:_]),

   class_fields(_:_, Id, true, false, F3),
   assertion(F3 = [birthday:_, country:_, id:_]),

   class_fields(_:_, Id, true, true, F4),
   assertion(F4 = [age:_]),

   class_fields(_:_, Id, false, _, F5),
   assertion(F5 = [class:_, functor:_, height:_, name:_, sex:_,
                   surname:_, weight:_]),

   class_fields(_:_, Id, true, _, F6),
   assertion(F6 = [age:_, birthday:_, country:_, id:_]),

   class_fields(_:_, Id, _, false, F7),
   assertion(F7 = [birthday:_, country:_, height:_, id:_, name:_,
                   sex:_, surname:_, weight:_]),

   class_fields(_:_, Id, _, true, F8),
   assertion(F8 = [age:_, class:_, functor:_]),

   class_fields(_:_, Id, _, _, F9),
   assertion(F9 = [age:_, birthday:_, class:_, country:_,
                   functor:_, height:_, id:_, name:_, sex:_,
                   surname:_,weight:_]).

:- end_tests(objects_i).

error: pathspec 'U-238/u/internal/objects_i.plt' did not match any file(s) known to git


script to plot data

script to plot data

set terminal pngcairo size 800,480
set output "plot.png"
set title "Pickle Jar Sensor"
set xlabel "Time"
set ylabel "Temperature °C"
set xdata time
set timefmt '%Y%m%d-%H%M%S'
set grid
plot 't.t' using 1:3 with linespoints title 'DS18B20'

error: pathspec 'scripts/plot_data.gp' did not match any file(s) known to git


Plot, results of termsuite in the corpus.

reset # do not use any previous settings
set title "Termsuite - Keyphrase extraction" # chart title
set xlabel "wrlog filter" # x-axis label
set ylabel "Precision/Recall/f1-score" # y-axis label
set term png size 800, 400
set size ratio 0.4
set output "termsuite.png" # name of image file (change to .eps for eps file)
set xtics 2.0, 0.2, 6.0  # set increment for x-axis
set ytics 0.1
set key left top
set style data linespoints # set default way of data plotting
set pointsize 1.5 # increase size of points on the line

plot "termsuite_ann.dat" using 1:2 title "precision", \
"termsuite_ann.dat" using 1:3 title "recall", \
"termsuite_ann.dat" using 1:4 title "f1-score"

error: pathspec 'termsuite/termsuite_keyphrase.gnu' did not match any file(s) known to git


ITER Demo folder: Add plt file to TEST-BEAUTY project

<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<databrowser>
    <title>
        <text>Beauty Plot</text>
        <color>
            <red>0</red>
            <green>0</green>
            <blue>255</blue>
        </color>
        1|Sans|12.0|1|GTK|1|
    </title>
    <graph_settings>
        <show_title>true</show_title>
        <show_legend>true</show_legend>
        <show_plot_area_border>false</show_plot_area_border>
        <transparent>false</transparent>
    </graph_settings>
    <scroll>true</scroll>
    <update_period>3.0</update_period>
    <start>-1 hours 0.0 seconds</start>
    <end>now</end>
    <time_axis>
        <axis>
            <name>Time</name>
            1|Sans|10.0|1|GTK|1|
            <scale_font>1|Sans|10.0|0|GTK|1|</scale_font>
            <color>
                <red>0</red>
                <green>0</green>
                <blue>0</blue>
            </color>
            <min>1.36628927793E12</min>
            <max>1.36629287793E12</max>
            <log_scale>false</log_scale>
            <autoscale>true</autoscale>
            <visible>true</visible>
            <grid_line>
                <show_grid_line>false</show_grid_line>
                <dash_grid_line>true</dash_grid_line>
                <color>
                    <red>200</red>
                    <green>200</green>
                    <blue>200</blue>
                </color>
            </grid_line>
            <format>
                <auto_format>true</auto_format>
                <time_format>true</time_format>
                <format_pattern>HH:mm</format_pattern>
            </format>
        </axis>
    </time_axis>
    <background>
        <red>255</red>
        <green>255</green>
        <blue>255</blue>
    </background>
    <archive_rescale>NONE</archive_rescale>
    <axes>
        <axis>
            <name>TEST-BTY0:AIn</name>
            1|Sans|10.0|1|GTK|1|
            <scale_font>1|Sans|10.0|0|GTK|1|</scale_font>
            <color>
                <red>21</red>
                <green>21</green>
                <blue>196</blue>
            </color>
            <min>0.0</min>
            <max>108.49089341573206</max>
            <log_scale>false</log_scale>
            <autoscale>true</autoscale>
            <visible>true</visible>
            <grid_line>
                <show_grid_line>false</show_grid_line>
                <dash_grid_line>true</dash_grid_line>
                <color>
                    <red>200</red>
                    <green>200</green>
                    <blue>200</blue>
                </color>
            </grid_line>
            <format>
                <auto_format>true</auto_format>
                <time_format>false</time_format>
                <format_pattern>############.##</format_pattern>
            </format>
        </axis>
        <axis>
            <name>TEST-BTY0:RAMP1</name>
            1|Sans|10.0|1|GTK|1|
            <scale_font>1|Sans|10.0|0|GTK|1|</scale_font>
            <color>
                <red>139</red>
                <green>105</green>
                <blue>20</blue>
            </color>
            <min>-1.0000321507591365</min>
            <max>100.0</max>
            <log_scale>false</log_scale>
            <autoscale>true</autoscale>
            <visible>true</visible>
            <grid_line>
                <show_grid_line>false</show_grid_line>
                <dash_grid_line>true</dash_grid_line>
                <color>
                    <red>200</red>
                    <green>200</green>
                    <blue>200</blue>
                </color>
            </grid_line>
            <format>
                <auto_format>true</auto_format>
                <time_format>false</time_format>
                <format_pattern>############.##</format_pattern>
            </format>
        </axis>
        <axis>
            <name>TEST-BTY0:RAMP2</name>
            1|Sans|10.0|1|GTK|1|
            <scale_font>1|Sans|10.0|0|GTK|1|</scale_font>
            <color>
                <red>160</red>
                <green>32</green>
                <blue>240</blue>
            </color>
            <min>-1.0000321507591365</min>
            <max>100.0</max>
            <log_scale>false</log_scale>
            <autoscale>true</autoscale>
            <visible>true</visible>
            <grid_line>
                <show_grid_line>false</show_grid_line>
                <dash_grid_line>true</dash_grid_line>
                <color>
                    <red>200</red>
                    <green>200</green>
                    <blue>200</blue>
                </color>
            </grid_line>
            <format>
                <auto_format>true</auto_format>
                <time_format>false</time_format>
                <format_pattern>############.##</format_pattern>
            </format>
        </axis>
    </axes>
    <annotations>
    </annotations>
    <pvlist>
        <pv>
            <name>TEST-BTY0:AI1</name>
            <display_name>TEST-BTY0:AI1</display_name>
            <visible>true</visible>
            <axis>0</axis>
            <linewidth>2</linewidth>
            <color>
                <red>21</red>
                <green>21</green>
                <blue>196</blue>
            </color>
            <trace_type>AREA</trace_type>
            <waveform_index>0</waveform_index>
            <period>0.0</period>
            <ring_size>5000</ring_size>
            <request>OPTIMIZED</request>
            <archive>
                <name>rdb</name>
                <url>jdbc:postgresql://localhost/css_archive_3_0_0</url>
                <key>1</key>
            </archive>
        </pv>
        <pv>
            <name>TEST-BTY0:AI2</name>
            <display_name>TEST-BTY0:AI2</display_name>
            <visible>true</visible>
            <axis>0</axis>
            <linewidth>2</linewidth>
            <color>
                <red>242</red>
                <green>26</green>
                <blue>26</blue>
            </color>
            <trace_type>AREA</trace_type>
            <waveform_index>0</waveform_index>
            <period>0.0</period>
            <ring_size>5000</ring_size>
            <request>OPTIMIZED</request>
            <archive>
                <name>rdb</name>
                <url>jdbc:postgresql://localhost/css_archive_3_0_0</url>
                <key>1</key>
            </archive>
        </pv>
        <pv>
            <name>TEST-BTY0:AI3</name>
            <display_name>TEST-BTY0:AI3</display_name>
            <visible>true</visible>
            <axis>0</axis>
            <linewidth>2</linewidth>
            <color>
                <red>66</red>
                <green>177</green>
                <blue>66</blue>
            </color>
            <trace_type>AREA</trace_type>
            <waveform_index>0</waveform_index>
            <period>0.0</period>
            <ring_size>5000</ring_size>
            <request>OPTIMIZED</request>
            <archive>
                <name>rdb</name>
                <url>jdbc:postgresql://localhost/css_archive_3_0_0</url>
                <key>1</key>
            </archive>
        </pv>
        <pv>
            <name>TEST-BTY0:RAMP1</name>
            <display_name>TEST-BTY0:RAMP1</display_name>
            <visible>true</visible>
            <axis>1</axis>
            <linewidth>2</linewidth>
            <color>
                <red>139</red>
                <green>105</green>
                <blue>20</blue>
            </color>
            <trace_type>AREA</trace_type>
            <waveform_index>0</waveform_index>
            <period>0.0</period>
            <ring_size>5000</ring_size>
            <request>OPTIMIZED</request>
            <archive>
                <name>rdb</name>
                <url>jdbc:postgresql://localhost/css_archive_3_0_0</url>
                <key>1</key>
            </archive>
        </pv>
        <pv>
            <name>TEST-BTY0:RAMP2</name>
            <display_name>TEST-BTY0:RAMP2</display_name>
            <visible>true</visible>
            <axis>2</axis>
            <linewidth>2</linewidth>
            <color>
                <red>128</red>
                <green>0</green>
                <blue>255</blue>
            </color>
            <trace_type>AREA</trace_type>
            <waveform_index>0</waveform_index>
            <period>0.0</period>
            <ring_size>5000</ring_size>
            <request>OPTIMIZED</request>
            <archive>
                <name>rdb</name>
                <url>jdbc:postgresql://localhost/css_archive_3_0_0</url>
                <key>1</key>
            </archive>
        </pv>
    </pvlist>
</databrowser>

error: pathspec 'products/ITER/products/org.csstudio.iter.archive.engine.product/demo/m-TEST-BEAUTY/src/main/databrowser/bty0.plt' did not match any file(s) known to git


Link with correct binary

Link with correct binary

remote: Support for password authentication was removed on August 13, 2021.
remote: Please see https://docs.github.com/en/get-started/getting-started-with-git/about-remote-repositories#cloning-with-https-urls for information on currently recommended modes of authentication.
fatal: Authentication failed for 'https://github.com/nkming2/MagicalGirlMica.git/'


gnuplot script to plot up the seeing from seeing.dat

#!/opt/local/bin/gnuplot
set xdata time
set timefmt x "%Y-%m-%d %H:%M:%S"
set format x "%H:%M"
set term png enhanced transparent font "/Library/Fonts/Arial.ttf,11"
set out "/Users/timdimm/Sites/images/seeing.png"
set xlabel "UT"
set ylabel "Seeing FWHM (arcsec)"
set yrange [0.0:5.0]
plot "seeing.dat" using 1:7 notitle
set term x11
#    EOF

error: pathspec 'plot.gnu' did not match any file(s) known to git


Add randgen.plt

Add randgen.plt

:- begin_tests(randgen).
:- use_module(randgen).

test(fd_random1_gnu) :-

   X in 5..15,
   fd_random(lcq, gnu, 0, S1, X),
   fd_random(lcq, gnu, 0, S1, X),
   assertion(S1 == 12345),
   assertion(X == 8).

test(fd_random1_knuth) :-

   X in 5..15,
   fd_random(lcq, knuth, 0, S1, X),
   fd_random(lcq, knuth, 0, S1, X),
   assertion(S1 == 1442695040888963407),
   assertion(X == 12).

:- end_tests(randgen).

error: pathspec 'U-238/u/rand/randgen.plt' did not match any file(s) known to git


gnuplot script template for 2d multi-project plots.

set terminal png medium size 640,480
set output '<DVAR name="outfile">'
set format y "%3.2f"
set xlabel '<DVAR name="xlabel">'
set ylabel '<DVAR name="ylabel">'
set key outside bottom center

plot
<DLOOP name="plot">
  '<DVAR name="datafile">' i <DLVAR name="index"> u 1:2:3 tit '<DLVAR name="title">' w yerror ls <DLVAR name="style">,\
</DLOOP>
f(x)=0

error: pathspec 'templates/2d_multi.gp' did not match any file(s) known to git


Add script to generate the -threaded CDF

set xrange [0:100]
plot "JustPingC.data"         u 2:(1./100000.) smooth cumulative title "C", \
     "JustPingHaskellNT.data" u 2:(1./100000.) smooth cumulative title "Haskell", \
     "JustPingHaskell.data"   u 2:(1./100000.) smooth cumulative title "Haskell -threaded"
set terminal postscript color
set output "Threaded.ps"
plot "JustPingC.data"         u 2:(1./100000.) smooth cumulative title "C", \
     "JustPingHaskellNT.data" u 2:(1./100000.) smooth cumulative title "Haskell", \
     "JustPingHaskell.data"   u 2:(1./100000.) smooth cumulative title "Haskell -threaded"

error: pathspec 'benchmarks/Threaded.gnuplot' did not match any file(s) known to git


missing file lines.plot

missing file lines.plot

set term png size 100, 26;
set autoscale;
unset border;
unset tics;
unset key;
set rmargin 0;
set lmargin 0;
set tmargin 0;
set bmargin 0;
plot 'out.tmp' with lines lt rgb "gray";

error: pathspec 'lines.plot' did not match any file(s) known to git


minor

minor

git-svn-id: 6ee47c8665bf46900d9baa0afb711c5b4a0eafac@5561 e2bb083e-7f23-0410-b3a8-8253ac9ef6d8

fatal: unable to access 'https://github.com/ya7lelkom/swift-k.git/': The requested URL returned error: 403


added

added

fatal: unable to access 'https://github.com/Josephss/CraViS.git/': The requested URL returned error: 403


[examples] add plot of the phase portrait

#----------------------------------------------------------------------------------
# File enabling the comparison in gnuplot between :
#    - reference results from the SMASH simulation
#      of the diode bridge circuit with trapezoidal
#      integrator and fixed 1 us time step (file "SMASHN0p25TRAP1us.dat").
#      The first 217 us are discarded since they correspond to the initialization
#      of the oscillating circuit.
#    - results from SICONOS  "DiodeBridgeTRAP1us.dat" (rename of "DiodeBridge.dat")
#      assumed to be obtained by a simulation of the DiodeBridge.cpp
#      sample with theta = 0.5 (trapezoidal integration) and a
#      time step of 1 us.
#
# Displayed results are :
#    - the voltage across the capacitor (or inductor)
#    - the current through the inductor
#    - the potential of each pole of the resistor (reference = diode R1 anode)
#    - the current through the resistor
#
# Slight differences may appear due to the smooth model of the diode
# used by SMASH. With a value of N (emission coefficient) of 0.25, the
# diode is a stiff one, with a threshold of around 0.25 V. Such a threshold
# yields small differences in the conduction state of the diode with respect
# to the ideal diode behavior currently (12/09/2005) modeled in the Siconos sample.
#----------------------------------------------------------------------------------

#set  term pdf
#set output "Portrait-CapFilter.pdf"

set grid
set xlabel "x1"
set ylabel "x2"
set zlabel "x3"
set ticslevel 0
splot "DiodeBridgeCapFilter.dat" u 2:3:8 w l

set nomultiplot

#set term post
#set output "Energy.ps"

#set origin 0.0, 0.0
#set size 1.0 ,1.0

#set xlabel "time in s"
#set ylabel "" 1
#set yrange [0:5.1e-5]
#plot\
#  "DiodeBridgeCapFilter.dat" u 1:($8) t    "storage, SICONOS TRAP 1us" w l,\
#  "DiodeBridgeCapFilter.dat" u 1:($9) t    "dissipation, SICONOS TRAP 1us" w l,\
#  "DiodeBridgeCapFilter.dat" u 1:($10) t    "total, SICONOS TRAP 1us" w l

error: pathspec 'examples/Electronics/Circuit-ThetaGammaSchemes/DiodeBridgeCapFilter-portrait.gp' did not match any file(s) known to git


Added another plotscript

Added another plotscript

git-svn-id: b233c5b81dcfbfdfca783093b3213ccfd2356b3a@550 3eb578c0-666c-0410-8428-3510748880ad

set terminal png
set yr[0:]
set output "../planar-axiall6b6.d0g1.d-3DF.png"
plot "../planar-axiall6b6.d0DF.txt" using 2:5 every ::33::43, "../analytical_data/BBR_axial_mix.txt" using 1:3 every ::33::43

set output "../planar-axiall6b6.d0g1.d-2DF.png"
plot "../planar-axiall6b6.d0DF.txt" using 2:5 every ::66::76, "../analytical_data/BBR_axial_mix.txt" using 1:3 every ::66::76

set output "../planar-axiall6b6.d0g1.d-1DF.png"
plot "../planar-axiall6b6.d0DF.txt" using 2:5 every ::99::108, "../analytical_data/BBR_axial_mix.txt" using 1:3 every ::99::108

set output "../planar-biaxiall6b6.d0g1.d-3DF.png"
plot "../planar-biaxiall6b6.d0DF.txt" using 2:5 every ::33::43, "../analytical_data/BBR_biaxial_mix.txt" using 1:3 every ::33::43

set output "../planar-biaxiall6b6.d0g1.d-2DF.png"
plot "../planar-biaxiall6b6.d0DF.txt" using 2:5 every ::66::76, "../analytical_data/BBR_biaxial_mix.txt" using 1:3 every ::66::76

set output "../planar-biaxiall6b6.d0g1.d-1DF.png"
plot "../planar-biaxiall6b6.d0DF.txt" using 2:5 every ::99::108, "../analytical_data/BBR_biaxial_mix.txt" using 1:3 every ::99::108

error: pathspec 'gnuplot_scripts/plotscriptl5b4.d0.plt' did not match any file(s) known to git


Base to play around with.

Base to play around with.

### TODO: 2014_income_vs_expenses.dat -> 2014 / income_vs_expenses = year for a group of
### histograms / plottitle
# set terminal png transparent nocrop enhanced size 450,320 font "arial,8"
# set output 'histograms.7.png'
set border 3 front lt black linewidth 1.000 dashtype solid
set boxwidth 0.95 absolute
set style fill   solid 1.00 noborder
set grid nopolar
set grid noxtics nomxtics ytics nomytics noztics nomztics \
 nox2tics nomx2tics noy2tics nomy2tics nocbtics nomcbtics
set grid layerdefault   lt 0 linewidth 0.500,  lt 0 linewidth 0.500
set key bmargin center horizontal Left reverse noenhanced autotitle columnhead nobox
set style histogram clustered gap 1 title textcolor lt -1 offset character 2, 0.25, 0
set datafile missing '-'
set style data histograms
set xtics border in scale 0,0 nomirror rotate by -45  autojustify
set xtics  norangelimit font ",8"
set xtics   ()
set ytics border in scale 0,0 mirror norotate  autojustify
set ytics autofreq  norangelimit font ",8"
set ztics border in scale 0,0 nomirror norotate  autojustify
set cbtics border in scale 0,0 mirror norotate  autojustify
set rtics axis in scale 0,0 nomirror norotate  autojustify
set paxis 1 tics border in scale 0,0 nomirror norotate  autojustify
set paxis 1 tics autofreq  rangelimit
set paxis 2 tics border in scale 0,0 nomirror norotate  autojustify
set paxis 2 tics autofreq  rangelimit
set paxis 3 tics border in scale 0,0 nomirror norotate  autojustify
set paxis 3 tics autofreq  rangelimit
#set paxis 4 tics border in scale 0,0 nomirror norotate  autojustify
#set paxis 4 tics autofreq  rangelimit
#set paxis 5 tics border in scale 0,0 nomirror norotate  autojustify
#set paxis 5 tics autofreq  rangelimit
#set paxis 6 tics border in scale 0,0 nomirror norotate  autojustify
#set paxis 6 tics autofreq  rangelimit
#set paxis 7 tics border in scale 0,0 nomirror norotate  autojustify
#set paxis 7 tics autofreq  rangelimit
set title "income_vs_expenses\n(Extra info here?)"
set xlabel "(note: histogram titles have specified offset relative to X-axis label)"
set xlabel  offset character 0, -2, 0 font "" textcolor lt -1 norotate
set ylabel "Value (EUR)"
x = 0.0
i = 23
## Last datafile plotted: "data.tmp"
#plot newhistogram "Northern Europe", 'immigration.dat' using "Sweden":xtic(1) t col, '' u "Denmark" t col, '' u "Norway" t col, newhistogram "Southern Europe", '' u "Greece":xtic(1) t col, '' u "Romania" t col, '' u "Yugoslavia" t col, newhistogram "British Isles", '' u "Ireland":xtic(1) t col, '' u "United_Kingdom" t col
plot newhistogram "2014", 'data.tmp' using "income":xtic(1) t col, '' u "expenses" t col, '' u "difference" t col, newhistogram "2015", '' u "income":xtic(1) t col, '' u "expenses" t col, '' u "difference" t col, newhistogram "2016", '' u "income":xtic(1) t col, '' u "expenses" t col, '' u "difference" t col

error: pathspec 'test/hist.gnu' did not match any file(s) known to git


Add gnuplot script

Add gnuplot script

set title "Error of the Runge-Kutta 4th order method"  # set the title of the plot
set xlabel "h"                         # set the label for the x axis
set ylabel "err"                       # set the label for the y axis
set key right bottom                   # set the position of the legend
set logscale xy                        # set axes x and y to use the logarithmic scale
plot 'error.dat', x, x**2, x**3, x**4
pause -1

error: pathspec 'lec5/rk4-error.plt' did not match any file(s) known to git


Add gnuplot script for densitySlice output

#!/usr/bin/gnuplot -c

set terminal png font arial 14 size 800,600

set border 3
unset title
unset key
unset xtics
unset ytics
set grid

set xrange [0:]
set yrange [0:]

set cbrange [ 0.00000 :  ]

set output ARG2
plot ARG1 matrix with image

error: pathspec 'PLOT_DENSITY.plt' did not match any file(s) known to git


New plt file

New plt file

# generate PNG
set terminal png
set output "access_hole.png"

#set size 1,1
#set multiplot

# plot read data
#set origin 0,0.5
#set size 1,0.5
set style line 1 lt 1 lc rgb "red"
set title "READ rates over time"
set datafile separator ','
set key autotitle columnhead
set xlabel "Time (s)"
set ylabel "Size (Bytes)"
set xrange [0: ]
#set yrange [0: ]
#print trace.'read.dat'
#plot trace.'.read.hole.sizes.csv' ls 1 title 'Data access hole sizes' with steps
plot trace.'.read.hole.sizes.csv'

# plot write data
#set origin 0,0
#set size 1,0.5
#set style line 2 lt 1 lc rgb "blue"
#set title "WRITE rates over time"
#set xlabel "Time (s)"
#set ylabel "Bandwidth (MB\/s)"
#set xrange [0: ]
#set yrange [0: ]
#print trace.'write.dat'
#plot trace.'.write.dat' ls 2 title 'Write' with steps

#unset multiplot
#set size 1,1

error: pathspec 'src/analysis/data_access_holes.plt' did not match any file(s) known to git


Add nuclearChart plotting file

Add nuclearChart plotting file

reset
unset key
set xlabel "Number of Neutrons (N)"
set ylabel "Number of Protons (Z)"
set palette rgb -21,-22,-23
set datafile sep ','
set size 1,1
set pointsize 3
set xtics 5
set ytics 5
set grid
set xrange [-1:180]
set term png size 5000,4500 font "/home/matmarti/Database_Extraction_Tool/Helvetica.ttf" 50
set output "nuclearChart.png"
plot "IsotopeList.txt" using ($3-$2):2:4 with points palette pointtype 5

error: pathspec 'nuclearChart.plt' did not match any file(s) known to git


Added gnuplot script for plotting read data.

set title "Latency vs. Value Size"
set xlabel "Value Size (B)"
set ylabel "Latency (us)"
set logscale xy
set key autotitle columnhead
set terminal postscript eps color
set output "read.spp_100000.ks_30.eps"
plot for [i=2:12] "read.spp_100000.ks_30.dat" u 1:i with lines lc i

error: pathspec 'gnuplot/read.spp_100000.ks_30.plt' did not match any file(s) known to git


adding gnuplot domain coloring script

adding gnuplot domain coloring script

set terminal pngcairo  transparent enhanced font "arial,10" fontscale 1.0 size 1200, 800
set output 'check.png'
unset key
set view map
set size ratio 1 1,1
set xtics border in scale 0,0 mirror norotate  autojustify
set ytics border in scale 0,0 mirror norotate  autojustify
set ztics border in scale 0,0 nomirror norotate  autojustify
set cbtics border in scale 0,0 mirror norotate  autojustify
set cbtics norangelimit
set cbtics ("0" -3.14159, "2pi" 3.14159)
set title "Domain coloring of output"
set xrange [ * : * ] noreverse writeback
set yrange [ * : * ] noreverse writeback
set cblabel "Phase Angle"
set cblabel  offset character -2, 0, 0 font "" textcolor lt -1 rotate
set cbrange [ -3.14159 : 3.14159 ] noreverse nowriteback
set palette positive nops_allcF maxcolors 0 gamma 1.5 color model HSV
set palette defined ( 0 0 1 1, 1 1 1 1 )

thresh = 0.1
Hue(x,y) = (pi + atan2(-y,-x)) / (2*pi)
r(x,y) = sqrt(x*x + y*y)
theta(x,y) = atan2(y,x)
z(x,y) = r(x,y)*exp(theta(x,y)*sqrt(-1))
ip(x,y) = imag(z(x,y))
rp(x,y) = real(z(x,y))
val(x,y) = 0.5 + 0.5*(abs(z(x,y))-floor(abs(z(x,y))))
color(x,y) = hsv2rgb(Hue(rp(x,y), ip(x,y)), abs(z(x,y)), val(x,y)*shade(x,y))
shade(x,y) = (abs(sin(rp(x,y)*pi)**thresh) * abs(sin(ip(x,y)*pi))**thresh)
save_encoding = "utf8"

## Last datafile plotted: "++"
splot 'out.dat' using 1:2:(color($3,$4)) with pm3d lc rgb variable nocontour

error: pathspec 'domain_coloring/domain_coloring.gp' did not match any file(s) known to git


Added plot with smooth curves

Added plot with smooth curves

error: pathspec 'path.gnuplot' did not match any file(s) known to git


Add in neuron fitness printer.

Add in neuron fitness printer.

set terminal pngcairo mono font '/usr/share/fonts/X11/Type1/lmbx10.pfb'
set termoption dash
set output outfile
set key inside left top box linetype -1 linewidth 1.000
set samples 50
set title "40-bit one max, 120 pop, roulette, fitness, full replacement"
set xlabel "Generation"
set ylabel "Fitness"
S = 1
plot infile u ($0):1:2 t "Avg + std.dev" w yerrorlines lt 1 lc rgb 'blue',\
     infile u ($0):3 t "Max" w l lt 1 lc rgb 'web-green', \
     infile u ($0):4 t "Min" w l lt 1 lc rgb 'dark-red'

error: pathspec 'bin/neuron-fit.gp' did not match any file(s) known to git


Add the new character dir in the inc paths

remote: Support for password authentication was removed on August 13, 2021.
remote: Please see https://docs.github.com/en/get-started/getting-started-with-git/about-remote-repositories#cloning-with-https-urls for information on currently recommended modes of authentication.
fatal: Authentication failed for 'https://github.com/nkming2/MagicalGirlMica.git/'


plot_projection_regex_count.gnu, plots.

plot_projection_regex_count.gnu, plots.

reset # do not use any previous settings
set title "F1 score - Keyphrase extraction - Projection of REGEX over the development data" # title
set xlabel "Min ocurrence of each REGEX" # x-axis label
set ylabel "F1 score" # y-axis label
set term png size 800, 400 font "Helvetica" 9
set size ratio 0.4 #plot dimensions
set output "plot_f1score_projection_regex_count.png" # name of image file
set grid y
set xtics rotate
set ytics 0.01
set key left top
set style data linespoints # set default way of data plotting
set pointsize 1.5 # increase size of points on the line

plot "dev_seq_regex_projection_filter_by_count.dat" using 1:5:xtic(2) title "Simple projection", \
"dev_seq_regex_projection_filter_by_count_inkeywords_substring.dat" using 1:5 title "In keywords (substring)", \
"dev_seq_regex_projection_filter_by_count_inkeywords_exact.dat" using 1:5 title "In keywords (exact)"

reset # do not use any previous settings
set title "Precision - Keyphrase extraction - Projection of REGEX over the development data" # title
set xlabel "Min ocurrence of each REGEX" # x-axis label
set ylabel "Precision" # y-axis label
set term png size 800, 400 font "Helvetica" 9
set size ratio 0.4 #plot dimensions
set output "plot_precision_projection_regex_count.png" # name of image file
set grid y
set xtics rotate
set ytics 0.01
set key left top
set style data linespoints # set default way of data plotting
set pointsize 1.5 # increase size of points on the line
plot "dev_seq_regex_projection_filter_by_count.dat" using 1:3:xtic(2) title "Simple projection", \
"dev_seq_regex_projection_filter_by_count_inkeywords_substring.dat" using 1:3 title "In keywords (substring)", \
"dev_seq_regex_projection_filter_by_count_inkeywords_exact.dat" using 1:3 title "In keywords (exact)"

reset # do not use any previous settings
set title "Recall - Keyphrase extraction - Projection of REGEX over the development data" # title
set xlabel "Min ocurrence of each REGEX" # x-axis label
set ylabel "Recall" # y-axis label
set term png size 800, 400 font "Helvetica" 9
set size ratio 0.4 #plot dimensions
set output "plot_recall_projection_regex_count.png" # name of image file
set grid y
set xtics rotate
set ytics 0.05
set key left top
set style data linespoints # set default way of data plotting
set pointsize 1.5 # increase size of points on the line

plot "dev_seq_regex_projection_filter_by_count.dat" using 1:4:xtic(2) title "Simple projection", \
"dev_seq_regex_projection_filter_by_count_inkeywords_substring.dat" using 1:4 title "In keywords (substring)", \
"dev_seq_regex_projection_filter_by_count_inkeywords_exact.dat" using 1:5 title "In keywords (exact)"

error: pathspec 'kpext/plot_projection_regex_count.gnu' did not match any file(s) known to git


the new default dump plot file

the new default dump plot file

#!/usr/bin/gnuplot

set terminal x11
set title "2D data plot"
unset key
set tic scale 0

# Color runs from white to green
set palette rgbformula -7,-7,2
set cbrange [MINVAL:MAXVAL]
set cblabel "Score"
unset cbtics

set xrange [-0.5:NX.5]
set yrange [-0.5:NY.5]

set view map
splot 'FILE' matrix with image
pause -1

error: pathspec 'dump_plot.gnu' did not match any file(s) known to git


experiment plots eta and delta not float

set autoscale
set xtic auto
set ytic auto
set xlabel "Number of training examples"
set ylabel "Accuracy"
set terminal epslatex

set output "lc_lr.tex"
plot for [i=1:9] 'exp'.i.'.lr.acc' using 1:2 title '\eta = '.i with linespoints

set output "lc_vfdt.tex"
plot "out.vfdt.acc" using 1:2 title "VFDT" with linespoints

error: pathspec 'code/exp.gnuplot' did not match any file(s) known to git


add zoom.gnu

add zoom.gnu

# Version v07  2017-02-08
# by Mathias Zechmeister
# this script allows to scroll and zoom with keyboard keys
# (wxt does not support KP_Add and KP_Subtract, i.e Num + and Num -, and ctrl+char bindings)
# bindings can be reset with:  bind! or reset bind

DELTA_X(a)=a*(GPVAL_X_MAX-GPVAL_X_MIN)
DELTA_Y(a)=a*(GPVAL_Y_MAX-GPVAL_Y_MIN)
SCR_X=.25     # x scroll fraction
SCR_Y=.25     # y scroll fraction
ZOOM_X=0.05   # x zoom factor
ZOOM_Y=0.05   # y zoom factor
ZOOM_XX=2.    # fast x zoom factor
ZOOM_YY=2.    # fast y zoom factor
X_NEW(a) =  0.5*GPVAL_X_MIN*(1-a) + 0.5*GPVAL_X_MAX*(1+a) # = (x1+x2)/2 - a*(x2-x1)/2
Y_NEW(a) =  0.5*GPVAL_Y_MIN*(1-a) + 0.5*GPVAL_Y_MAX*(1+a)

# SCROLLING
bind "Right"       "set xrange [GPVAL_X_MIN+DELTA_X(SCR_X):GPVAL_X_MAX+DELTA_X(SCR_X)]; replot" # scroll right
bind "Left"        "set xrange [GPVAL_X_MIN-DELTA_X(SCR_X):GPVAL_X_MAX-DELTA_X(SCR_X)]; replot" # scroll left
bind "Up"          "set yrange [GPVAL_Y_MIN+DELTA_Y(SCR_Y):GPVAL_Y_MAX+DELTA_Y(SCR_Y)]; replot" # scroll up
bind "Down"        "set yrange [GPVAL_Y_MIN-DELTA_Y(SCR_Y):GPVAL_Y_MAX-DELTA_Y(SCR_Y)]; replot" # scroll down
# SCROLL PAGEWISE
bind "PageUp"      "set yrange [GPVAL_Y_MIN+DELTA_Y(1.)   :GPVAL_Y_MAX+DELTA_Y(1.)];    replot" # page up
bind "Alt-Up"      "set yrange [GPVAL_Y_MIN+DELTA_Y(1.)   :GPVAL_Y_MAX+DELTA_Y(1.)];    replot" # page up
bind "PageDown"    "set yrange [GPVAL_Y_MIN-DELTA_Y(1.)   :GPVAL_Y_MAX-DELTA_Y(1.)];    replot" # page down
bind "Alt-Down"    "set yrange [GPVAL_Y_MIN-DELTA_Y(1.)   :GPVAL_Y_MAX-DELTA_Y(1.)];    replot" # page down
bind "Home"        "set xrange [GPVAL_X_MIN-DELTA_X(1.)   :GPVAL_X_MAX-DELTA_X(1.)];    replot" # page left
bind "Alt-Left"    "set xrange [GPVAL_X_MIN-DELTA_X(1.)   :GPVAL_X_MAX-DELTA_X(1.)];    replot" # page left
bind "End"         "set xrange [GPVAL_X_MIN+DELTA_X(1.)   :GPVAL_X_MAX+DELTA_X(1.)];    replot" # page right
bind "Alt-Right"   "set xrange [GPVAL_X_MIN+DELTA_X(1.)   :GPVAL_X_MAX+DELTA_X(1.)];    replot" # page right
# SCROLL END
bind "Ctrl-Home"   "set xrange [GPVAL_DATA_X_MIN : GPVAL_DATA_X_MIN+DELTA_X(1.)];    replot" # horizontal scroll to first data point
bind "Ctrl-End"    "set xrange [GPVAL_DATA_X_MAX-DELTA_X(1.) : GPVAL_DATA_X_MAX];    replot" # horizontal scroll to last data point
bind "Ctrl-PageUp" "set yrange [GPVAL_DATA_Y_MAX-DELTA_Y(1.) : GPVAL_DATA_Y_MAX];    replot" # scroll to top
bind "Ctrl-PageDown" "set yrange [GPVAL_DATA_Y_MIN : GPVAL_DATA_Y_MIN+DELTA_Y(1.)];  replot" # scroll to bottom

# ZOOMING
bind "Ctrl-Right"  "set xrange [GPVAL_X_MIN+DELTA_X(ZOOM_X):GPVAL_X_MAX-DELTA_X(ZOOM_X)]; replot" # zoom in x
bind "Ctrl-Left"   "set xrange [GPVAL_X_MIN-DELTA_X(ZOOM_X):GPVAL_X_MAX+DELTA_X(ZOOM_X)]; replot" # zoom out x
bind "Ctrl-Up"     "set yrange [GPVAL_Y_MIN-DELTA_Y(ZOOM_Y):GPVAL_Y_MAX+DELTA_Y(ZOOM_Y)]; replot" # zoom out y
bind "Ctrl-Down"   "set yrange [GPVAL_Y_MIN+DELTA_Y(ZOOM_Y):GPVAL_Y_MAX-DELTA_Y(ZOOM_Y)]; replot" # zoom in y
bind "Ctrl-Alt-Right"  "set xrange [X_NEW(-1./ZOOM_XX):X_NEW(1./ZOOM_XX)]; replot" # fast zoom in x
bind "Ctrl-Alt-Left"   "set xrange [X_NEW(-ZOOM_XX):X_NEW(ZOOM_XX)]; replot"       # fast zoom out x
bind "Ctrl-Alt-Up"     "set yrange [Y_NEW(-ZOOM_YY):Y_NEW(ZOOM_YY)]; replot"       # fast zoom out y
bind "Ctrl-Alt-Down"   "set yrange [Y_NEW(-1./ZOOM_YY):Y_NEW(1./ZOOM_YY)]; replot" # fast zoom in y
bind "KP_Add"      "print 'a'; set xrange [X_NEW(-1./ZOOM_XX):X_NEW(1./ZOOM_XX)];\
                    set yrange [GPVAL_Y_MIN+DELTA_Y(ZOOM_Y):GPVAL_Y_MAX-DELTA_Y(ZOOM_Y)]; replot" # zoom in both
bind "+"           "set xrange [GPVAL_X_MIN+DELTA_X(ZOOM_X):GPVAL_X_MAX-DELTA_X(ZOOM_X)];\
                    set yrange [GPVAL_Y_MIN+DELTA_Y(ZOOM_Y):GPVAL_Y_MAX-DELTA_Y(ZOOM_Y)]; replot" # zoom in both
bind "KP_Subtract" "set xrange [GPVAL_X_MIN-DELTA_X(ZOOM_X):GPVAL_X_MAX+DELTA_X(ZOOM_X)];\
                    set yrange [GPVAL_Y_MIN-DELTA_Y(ZOOM_Y):GPVAL_Y_MAX+DELTA_Y(ZOOM_Y)]; replot" # zoom out both
bind "-"           "set xrange [GPVAL_X_MIN-DELTA_X(ZOOM_X):GPVAL_X_MAX+DELTA_X(ZOOM_X)];\
                    set yrange [GPVAL_Y_MIN-DELTA_Y(ZOOM_Y):GPVAL_Y_MAX+DELTA_Y(ZOOM_Y)]; replot" # zoom out both
bind "Alt-KP_Add"  "set xrange [Y_NEW(-1./ZOOM_YY):Y_NEW(1./ZOOM_YY)];\
                    set yrange [Y_NEW(-1./ZOOM_YY):Y_NEW(1./ZOOM_YY)]; replot" # fast zoom in both
bind "Alt-+"       "set xrange [X_NEW(-1./ZOOM_XX):X_NEW(1./ZOOM_XX)];\
                    set yrange [Y_NEW(-1./ZOOM_YY):Y_NEW(1./ZOOM_YY)]; replot" # fast zoom in both
bind "Alt-KP_Subtract" "set xrange [X_NEW(-ZOOM_XX):X_NEW(ZOOM_XX)];\
                    set yrange [Y_NEW(-ZOOM_YY):Y_NEW(ZOOM_YY)]; replot" # fast zoom out both
bind "Alt--"       "set xrange [X_NEW(-ZOOM_XX):X_NEW(ZOOM_XX)];\
                    set yrange [Y_NEW(-ZOOM_YY):Y_NEW(ZOOM_YY)]; replot" # fast zoom out both

bind "C"      "set cbrange [*:*]; replot"                   # reset color range
bind "Alt-C"  "set cbrange [GPVAL_CB_MIN:GPVAL_CB_MAX];"    # save  color range (resetted by 'u', use 'U')
bind "Alt-c"  "set cbrange [GPVAL_CB_MIN:GPVAL_CB_MAX];"    # save  color range (resetted by 'u', use 'U')

# resize all
if (GPVAL_VERSION>4.2)\
bind "Ctrl-u" "set xrange [GPVAL_DATA_X_MIN:GPVAL_DATA_X_MAX];\
               set yrange [GPVAL_DATA_Y_MIN:GPVAL_DATA_Y_MAX]; replot";\
bind "U"      "set xrange [GPVAL_DATA_X_MIN:GPVAL_DATA_X_MAX];\
               set yrange [GPVAL_DATA_Y_MIN:GPVAL_DATA_Y_MAX]; replot;"  # reset ranges to max/min data
bind "Alt-u"  "set xrange [*:*]; set yrange [*:*]; replot"  # total reset
bind "x"      "set xrange [*:*]; replot"
bind "y"      "set yrange [*:*]; replot"
bind "z"      "set yrange [0:]; replot"; # zero yaxis

if (GPVAL_VERSION>4.2)\
bind "Ctrl-x" "set xrange [GPVAL_DATA_X_MIN:GPVAL_DATA_X_MAX]; replot";\
bind "X"      "set xrange [GPVAL_DATA_X_MIN:GPVAL_DATA_X_MAX]; replot";\
bind "Ctrl-y" "set yrange [GPVAL_DATA_Y_MIN:GPVAL_DATA_Y_MAX]; replot";\
bind "Y"      "set yrange [GPVAL_DATA_Y_MIN:GPVAL_DATA_Y_MAX]; replot";

 # reset ranges to min/max y data

# pan with mouse (press a, then )
bind "a"      "pause mouse; DELTAX=MOUSE_X;        DELTAY=MOUSE_Y;\
               pause mouse; DELTAX=DELTAX-MOUSE_X; DELTAY=DELTAY-MOUSE_Y;\
               set xrange [GPVAL_X_MIN+DELTAX:GPVAL_X_MAX+DELTAX];\
               set yrange [GPVAL_Y_MIN+DELTAY:GPVAL_Y_MAX+DELTAY]; replot"

# center to mouse (if (GPVAL_VERSION<=4.2) pause mouse;?)
bind "c"      "DELTAX=0.5*(GPVAL_X_MAX-GPVAL_X_MIN);\
               DELTAY=0.5*(GPVAL_Y_MAX-GPVAL_Y_MIN);\
               set xrange [MOUSE_X-DELTAX:MOUSE_X+DELTAX];\
               set yrange [MOUSE_Y-DELTAY:MOUSE_Y+DELTAY]; replot" # center to a previous mouse click

bind "G"      'set grid front lt GR_COL=exists("GR_COL")?(GR_COL+1):1; replot'  # toggle various grid colors
bind "Alt-G"  'set grid front lt GR_COL=exists("GR_COL")?(GR_COL-1):1; replot'  # toggle previous grid colors
bind "Alt-g"  'set grid front lt GR_COL=exists("GR_COL")?(GR_COL-1):1; replot'  # toggle previous grid colors

if (GPVAL_VERSION>4.2)\
bind "P"      'PAL_MOD=exists("PAL_MOD")?(PAL_MOD+1)%5:1;\
               eval "set palette col model ".(PAL_MOD==0?"RGB":PAL_MOD==1?"HSV":PAL_MOD==2?"CMY":PAL_MOD==3?"YIQ":"XYZ"); replot'
               # toggling various palette models

bind "B"      'B_FUNC=exists("B_FUNC")?(B_FUNC+1)%36:1; set palette rgb 3,2,B_FUNC; replot'  # toggle blue
bind "Alt-b"  'B_FUNC=exists("B_FUNC")?(B_FUNC-1)%36:1; set palette rgb 3,2,B_FUNC; replot'  # toggle blue
bind "R"      'R_FUNC=exists("R_FUNC")?(R_FUNC+1)%36:1; set palette rgb R_FUNC,3,2; replot'  # toggle red
bind "Alt-r"  'R_FUNC=exists("R_FUNC")?(R_FUNC-1)%36:1; set palette rgb R_FUNC,3,2; replot'  # toggle red

# bind "7"     is built-in toggle ratio
bind "Alt-7"  "set size square; GP_Y_CEN=0.5*(GPVAL_Y_MAX+GPVAL_Y_MIN);\
               set yrange [GP_Y_CEN-DELTA_X(.5):GP_Y_CEN+DELTA_X(.5)]; replot" # set square; keep x fixed
bind "/"      "set size square; GP_X_CEN=0.5*(GPVAL_X_MAX+GPVAL_X_MIN);\
               set xrange [GP_X_CEN-DELTA_Y(.5):GP_X_CEN+DELTA_Y(.5)]; replot" # set square; keep y fixed
               # assumes "Shift-7" == "/" German keyboard

bind "M"      'GP_CBOX=exists("GP_CBOX")?(GP_CBOX+1)%2:1; if (GP_CBOX) unset colorbox; replot;\
               else set colorbox; replot'   # toggle colorbox

bind "Alt-R"  "reset; replot" # reset with "Shift-Alt-r"

# sed -r  -n "/\\\\/N; /^bind /{ s/[^d] [Q\"][^#]*[#]?/  /; s/bind //p} " ~/zoom.gnu
bind "H"      'system("sed -r -n  \"/\\\\\\\\/N; /^bind /{ s/[^d] [\\x27\\\"][^#]*[#]?/  /; s/bind //p} \"  ~/zoom.gnu")'
bind "H"      'system("sed -r -n  \"/\\\\\\\\/N; /^bind /{ s/bind \\\"/ /; s/\\\"[^#]*[#]?/\t\t/p} \"  ~/zoom.gnu")'
# append next line if \ at line end

# awk  '/^bind /{printf("%-16s%s\n",$2,$NF""substr(RT,1,1))}' FS='bind "|" [^#]*|# *' RS='[^\\\\]\n'   zoom.gnu
# awk  "/^bind /{printf(\"%-16s%s\\n\",\$2,\$NF\"\"substr(RT,1,1))}" FS='bind "|" [^#]*|# *' RS='[^\\\\]\n'   zoom.gnu
# bind "H"      'print("awk  \x27/^bind /{printf(\"%-16s%s\\n\",$2,$NF\"\"substr(RT,1,1))}\x27 FS=\x27bind \"|\" [^#]*|# *\x27 RS=\x27[^\\\\\\\\]\n\x27   ~/zoom.gnu")'

#awk  "/^bind /{printf(\"%-16s%s\",\$2,\$NF\"\"RT)}" FS='bind \"|\" [^#]*|# *' RS='[^\\\\]\n'   zoom.gnu
bind "H"      'system("awk  \"/^bind /{printf(\\\"%-16s%s\\\",\\\$2,\\\$NF\\\"\\\"RT)}\" FS=\"bind \\\"|\\\" [^#]*|# *\" RS=\"[^\\\\\\\\\\\\\\]\\n\"   ~/zoom.gnu")' # polished help
bind "H"      'system("awk  \047/^bind /{printf(\"%-16s%s%s\",\$2,\$NF,RT)}\047 FS=\047bind \"|\" [^#]*|# *\047 RS=\047[^\\\\\\\\]\n\047   ~/zoom.gnu")' # polished help

#                      awk 'NR>1{printf("%-16s%s\n",$1,$2)}' RS='\nbind "' FS='" [^#]*|\n' zoom.gnu

error: pathspec 'zoom.gnu' did not match any file(s) known to git


Added gnuplot script to plot shape evolution.

set terminal epslatex color standalone size 10cm,5cm

unset key

load 'blues.pal'

set size ratio -1

print "Dataset:"
folder = system('read hei; echo $hei')
print "Stop time:"
T = system('read hei; echo $hei')

file = folder."/Plots/shape_evolution.tex"
set output file

files = folder.'/Analysis/contour/contour_'

N = system('ls '.files.'*.dat | wc -l')-1

set xrange [0:2]
set yrange [0:1]
set cbrange[0:T]

set xlabel "$x$"
set ylabel "$y$"
set cblabel "Time $t$"

set xtics 1.0
set ytics 1.0
set cbtics format "%1.1f"

set mxtics 10
set mytics 10

plot for [i=0:N:N/5] sprintf(files.'%06d.dat', i) u 1:2 w l lt palette frac i*1./N lw 3

error: pathspec 'scripts/plot_shape_evolution.gp' did not match any file(s) known to git


add debugging script

add debugging script

set datafile separator ","
plot "log.csv" u 3:4, "log.csv" u 9:10, "log.csv" u 15:16
pause -1

error: pathspec 'plot.gp' did not match any file(s) known to git


remove dependent files

remove dependent files

error: pathspec 'Thermal/Thermal' did not match any file(s) known to git
error: pathspec 'shock/amplitude.gnu' did not match any file(s) known to git


testtri/show.plt simple script to display output from demoCylinder

#
#
#

set title "Iso-Tritille Representation of Cylindrical Cloud\nRADIAL interpolation"
set xlabel "X"
set ylabel "Y"
set zlabel "Z"

set xrange [ 94:112]
set yrange [191:208]
set zrange [300:305]
set xyplane at 300

splot \
	  'test_pnts.dat' w d lc 1 ti "Surface" \
	, 'test_nodes.dat' u 6:7:8 w p pt 9 lc -1 ti "Nodes" \
	, 'test_edgesAll.dat' w l lc 3 ti "TriTille" \
	, 'test_interp.dat' w d lc 3 ti "Interpolated" \
	;
pause -1;

splot \
	  'test_pnts.dat' w d lc 1 ti "Surface" \
	, 'test_interp.dat' w d lc 3 ti "Interpolated" \
	;
pause -1;

error: pathspec 'testtri/show.plt' did not match any file(s) known to git


gnuplot file for IOPS vs latency

gnuplot file for IOPS vs latency

set xlabel 'Target I/O Operations per Second (IOPS)'
set ylabel 'Average latency (ms)'
set y2label 'Achieved I/O Operations per Second (IOPS)'
set title 'Random read 4k operations'
set key outside top center horiz
plot  'IOPSvsLatency.txt' with yerror title 'Latency s.d. (ms)', 'IOPSvsLatency.txt' using 1:2 with lines title 'Mean latency (ms)', 'IOPSvsLatency-qd.txt' using 1:2 axes x1y2 with lines title 'Achieved IOPS'

error: pathspec 'spit/IOPSvsLatency.gnu' did not match any file(s) known to git


A few fixes, and don't test stage 1 backtracking for ECM

remote: Support for password authentication was removed on August 13, 2021.
remote: Please see https://docs.github.com/en/get-started/getting-started-with-git/about-remote-repositories#cloning-with-https-urls for information on currently recommended modes of authentication.
fatal: Authentication failed for 'https://github.com/mancoast/cado-nfs.git/'


Function to supply starting point forfrom Brent's parameterization

git-svn-id: 189946a10c5fc96e9dd03ba7cba917cd4c3d09f4@1051 de4796e2-0b1e-0410-91b4-86bc23549317


x61s

x61s

git-svn-id: be7a9f1a1fc095f35e91e84c5b42dcddbbc723e4@3903 5f5bf4bb-3343-0410-8278-4fa8eb3319dc

set terminal pdf
set key right Right bottom
set xrange [-0.8:0.8]
set yrange [-0.8:0]
w_r = 0.7
d_c = 0.7
unset xtics
set x2tics ("-w_r" -w_r,  "0" 0, "w_r" w_r)
set ytics ("0" 0, "d_c" -d_c)
set output "gnuplot.pdf"
plot "-" title "L_m" with lines ls 1, "-" title "L-isoterm" with lines ls 2, "-" notitle with lines ls 2, "-" notitle with lines ls 2, "-" title "L_00" with points ls 3
-0.7 0
0 -0.7
0.7 0
e

-0.6 0
0 -0.6
0.6 0
e

-0.4 0
0 -0.4
0.4 0
e

-0.2 0
0 -0.2
0.2 0
e

0 0
e

error: pathspec 'txt/rootdens/row.plt' did not match any file(s) known to git


Add CSA scope trace plot TMS1mmSingleCSAOut1

fatal: unable to access 'https://github.com/plac-lab/TMIIaTest.git/': The requested URL returned error: 403


Makefile for gcc

Makefile for gcc

#
BHOME	=$(PWD)
#
CC	= gcc-5
#
#
COMP	= -fopenmp -lm
COPTS	=  -O3 -fno-inline -fstrict-aliasing
#
#
NOLINK= -c
#

all: sum dot normsq

sum: sum.o
	$(CC) $(COMP) -o sum sum.o

normsq: normsq.o
	$(CC) $(COMP) -o normsq normsq.o

dot: dot.o
	$(CC) $(COMP) -o dot dot.o

%.o: %.c
	$(CC) $(COPTS) $(COMP) $(NOLINK) $<

clean:
	rm -f *.o sum dot normsq

error: pathspec 'openmp/Makefile.gnu' did not match any file(s) known to git


gnuplot script added

gnuplot script added

set term png
set grid
set xlabel "Penetration in mm"
set ylabel "Force in kN"
#set yrange [-100:100]
set nokey
#set key top left
set out "fd.png"
plot "total force fx,fy,fz_NKW.txt" using ($1/5-0.3):($2/1000) w lp

error: pathspec 'Contact/Penalty/fd.gnu' did not match any file(s) known to git


all in one viz

all in one viz

set datafile separator ","
set terminal png truecolor size 12000,720  background "#FFFFFF"

set xtics 100

list = system('ls *classifier*.csv')
do for [file in list] {
   set output sprintf('results/classifier.-.%s.png', file)
   set title sprintf("Raw %s", file)
   plot \
    file u 1 with lines, \
    file u 2 with lines, \
    file u 3 with lines, \
    file u 4 with points
}

list = system('ls *strokes*.csv')
do for [file in list] {
   set output sprintf('results/strokes.-.%s.png', file)
   set title sprintf("Raw %s", file)
   plot \
    file u 2 with lines title "raw", \
    file u 3 with lines title "filtered", \
    file u 4 with lines title "average a", \
    file u 5 with points pointtype 1 title "stroke", \
    file u 6 with points title "lap"
}

set xtics 0.5

set arrow from graph 0, first 0 to graph 1, first 0 nohead front ls 63 lw 2
set arrow from graph 0, first 150 to graph 1, first 150 nohead front ls 63 lw 2

list = system('ls *orientation*.csv')

do for [file in list] {
    set output sprintf('results/raw.-.%s.png', file)
    set title sprintf("Raw %s", file)
    plot \
        file using ($1/60000):2 with lines, \
        file using ($1/60000):3 with lines, \
        file using ($1/60000):4 with lines

    set output sprintf('results/decay.-.%s.png', file)
    set title sprintf("Decay %s", file)
    sumA = 0
    sumB = 0
    sumC = 0
    countC = 0
    plot \
        file using ($1/60000):2 with lines, \
        file using ($1/60000):(sumA = (0.995 * sumA) + (0.005 * $2)) with lines, \
        file using ($1/60000):(sumB = (0.999 * sumB) + (0.001 * $2)) with lines
}

error: pathspec 'dataViz/all.gnuplot' did not match any file(s) known to git


gnuplot script for plotting displacement

#!/Applications/Gnuplot.app/Contents/Resources/bin/gnuplot
#
#
#    	G N U P L O T
#    	Version 5.0 patchlevel 5    last modified 2016-10-02
#
#    	Copyright (C) 1986-1993, 1998, 2004, 2007-2016
#    	Thomas Williams, Colin Kelley and many others
#
#    	gnuplot home:     http://www.gnuplot.info
#    	faq, bugs, etc:   type "help FAQ"
#    	immediate help:   type "help"  (plot window: hit 'h')
# set terminal wxt 0 enhanced
# set output
set term pdfcairo enhanced font 'Times,26' lw 3 size 8,6
set output 'T-BFO222-disp.pdf'
set datafile separator ","
set encoding iso_8859_1
#set encoding default
unset clip points
set clip one
unset clip two
set bar 1.000000 front
set border 31 front lt black linewidth 1.000 dashtype solid
set zdata
set ydata
set xdata
set y2data
set x2data
set boxwidth
set style fill  empty border
set style rectangle back fc  bgnd fillstyle   solid 1.00 border lt -1
set style circle radius graph 0.02, first 0.00000, 0.00000
set style ellipse size graph 0.05, 0.03, first 0.00000 angle 0 units xy
set dummy x, y
set format x "% h"
set format y "% h"
set format x2 "% h"
set format y2 "% h"
set format z "% h"
set format cb "% h"
set format r "% h"
set timefmt "%d/%m/%y,%H:%M"
set angles radians
set tics back
unset grid
set raxis
set style parallel front  lt black linewidth 2.000 dashtype solid
set key title "" center
set key inside right top vertical Right noreverse enhanced autotitle nobox
set key noinvert samplen 4 spacing 1 width 0 height 0
set key maxcolumns 0 maxrows 0
set key noopaque
unset label
unset arrow
set style increment default
unset style line
unset style arrow
set style histogram clustered gap 2 title textcolor lt -1
unset object
set style textbox transparent margins  1.0,  1.0 border
unset logscale
set offsets 0, 0, 0, 0
set pointsize 1
set pointintervalbox 1
unset polar
unset parametric
unset decimalsign
unset minussign
set view 60, 30, 1, 1
set samples 100, 100
set isosamples 10, 10
set surface
unset contour
set cntrlabel  format '%8.3g' font '' start 5 interval 20
set mapping cartesian
unset hidden3d
set cntrparam order 4
set cntrparam linear
set cntrparam levels auto 5
set cntrparam points 5
set size ratio 0 1,1
set origin 0,0
set style data points
set style function lines
unset xzeroaxis
unset yzeroaxis
unset zzeroaxis
unset x2zeroaxis
unset y2zeroaxis
set xyplane relative 0.5
set tics scale  1, 0.5, 1, 1, 1
set mxtics default
set mytics default
set mztics default
set mx2tics default
set my2tics default
set mcbtics default
set mrtics default
set xtics border in scale 1,0.5 mirror norotate  autojustify
set xtics  norangelimit autofreq
set ytics border in scale 1,0.5 mirror norotate  autojustify
set ytics  norangelimit autofreq
set ztics border in scale 1,0.5 nomirror norotate  autojustify
set ztics  norangelimit autofreq
unset x2tics
unset y2tics
set cbtics border in scale 1,0.5 mirror norotate  autojustify
set cbtics  norangelimit autofreq
set rtics axis in scale 1,0.5 nomirror norotate  autojustify
set rtics  norangelimit autofreq
unset paxis 1 tics
unset paxis 2 tics
unset paxis 3 tics
unset paxis 4 tics
unset paxis 5 tics
unset paxis 6 tics
unset paxis 7 tics
set title ""
set title  font "" norotate
set timestamp bottom
set timestamp ""
set timestamp  font "" norotate
set rrange [ * : * ] noreverse nowriteback
set trange [ * : * ] noreverse nowriteback
set urange [ * : * ] noreverse nowriteback
set vrange [ * : * ] noreverse nowriteback
#set xlabel "Pressure (GPa)"
set xlabel "{/Helvetica-Italic P} (GPa)"
set xlabel  font "" textcolor lt -1 norotate
set x2label ""
set x2label  font "" textcolor lt -1 norotate
set xrange [ * : * ] noreverse nowriteback
set x2range [ * : * ] noreverse nowriteback
set ylabel "Fe-O displacement (\305)"
set ylabel  font "" textcolor lt -1 rotate by -270
set y2label ""
set y2label  font "" textcolor lt -1 rotate by -270
set yrange [ * : * ] noreverse nowriteback
set y2range [ * : * ] noreverse nowriteback
set zlabel ""
set zlabel  font "" textcolor lt -1 norotate
set zrange [ * : * ] noreverse nowriteback
set cblabel ""
set cblabel  font "" textcolor lt -1 rotate by -270
set cbrange [ * : * ] noreverse nowriteback
set paxis 1 range [ * : * ] noreverse nowriteback
set paxis 2 range [ * : * ] noreverse nowriteback
set paxis 3 range [ * : * ] noreverse nowriteback
set paxis 4 range [ * : * ] noreverse nowriteback
set paxis 5 range [ * : * ] noreverse nowriteback
set paxis 6 range [ * : * ] noreverse nowriteback
set paxis 7 range [ * : * ] noreverse nowriteback
set zero 1e-08
set lmargin  -1
set bmargin  -1
set rmargin  -1
set tmargin  -1
set locale "C"
set pm3d explicit at s
set pm3d scansautomatic
set pm3d interpolate 1,1 flush begin noftriangles noborder corners2color mean
set palette positive nops_allcF maxcolors 0 gamma 1.5 color model RGB
set palette rgbformulae 7, 5, 15
set colorbox default
set colorbox vertical origin screen 0.9, 0.2, 0 size screen 0.05, 0.6, 0 front  noinvert bdefault
set style boxplot candles range  1.50 outliers pt 7 separation 1 labels auto unsorted
set loadpath
set fontpath
set psdir
set fit brief errorvariables nocovariancevariables errorscaling prescale nowrap v5
#GNUTERM = "wxt"
x = 0.0
## Last datafile plotted: "T-BFO222-1Ca-v1.csv"
plot 'T-BFO222-pure-v1.csv'  u ($1/10):2 w lp lw 2 ps 2 lt 7 lc 2 t '40-atom T-BiFeO3', 'T-BFO222-1Ca-v1.csv' u ($1/10):2 w lp lw 2 ps 2 lt 7 lc 1 t 'BFO222-1Ca'
#    EOF

error: pathspec 'matsci/project2017/pressure-doping-ferroelectrics-Ts/BFO/plot-disp-cairo.gnu' did not match any file(s) known to git


Created generator of figures for future ROC/PR tutorial.

# Produce "crisp" output for the web
set terminal png font "sans,10" size 250,220

# Attributes for all plots
set xlabel "False Positive Rate"
set ylabel "True Positive Rate"

# Best possible ROC curve
set label 1 "AUC: 1.0" at 1,0 right front offset character -1,1
set output "figBestRoc.png"
plot "-" notitle with lines linecolor rgb "blue" linewidth 3
     0 0
     0 1
     1 1
     e

# Average ROC curve
set label 1 "AUC: 0.5" at 1,0 right front offset character -1,1
set output "figAverageRoc.png"
plot "-" notitle with lines linecolor rgb "blue" linewidth 3
     0 0
     1 1
     e

# Worst possible ROC curve
set label 1 "AUC: 0.0" at 1,0 right front offset character -1,1
set output "figWorstRoc.png"
plot "-" notitle with lines linecolor rgb "blue" linewidth 3
     0 0
     1 0
     1 1
     e

# Example ROC curve
set label 1 "AUC: 0.68" at 1,0 right front offset character -1,1
set output "figExampleRoc.png"
plot x notitle with lines linecolor rgb "forest-green" linewidth 1, "-" notitle with lines linecolor rgb "blue" linewidth 3
     0.0 0.0
     0.0 0.2
     0.1 0.2
     0.1 0.4
     0.2 0.4
     0.2 0.6
     0.4 0.6
     0.4 0.7
     0.5 0.7
     0.5 0.8
     0.6 0.8
     0.8 0.8
     0.8 0.9
     0.9 0.9
     0.9 1.0
     1.0 1.0
     e

# Example ROC curve convex hull
# Area is 0.2 * 0.4 + 0.3 * 0.7 + 0.4 * 0.9 + 0.1
set label 1 "AUC: 0.75" at 1,0 right front offset character -1,1
set output "figExampleRocConvexHull.png"
plot x notitle with lines linecolor rgb "forest-green" linewidth 1, "-" notitle with lines linecolor rgb "red" linewidth 1, "-" notitle with lines linecolor rgb "blue" linewidth 3
     0.0 0.0
     0.0 0.2
     0.1 0.2
     0.1 0.4
     0.2 0.4
     0.2 0.6
     0.4 0.6
     0.4 0.7
     0.5 0.7
     0.5 0.8
     0.6 0.8
     0.8 0.8
     0.8 0.9
     0.9 0.9
     0.9 1.0
     1.0 1.0
     e
     0.0 0.0
     0.0 0.2
     0.2 0.6
     0.5 0.8
     0.9 1.0
     1.0 1.0
     e

error: pathspec 'doc/makeFigures.gnuplot' did not match any file(s) known to git


Bump C++ version (for make_unique)

Bump C++ version (for make_unique)

remote: Support for password authentication was removed on August 13, 2021.
remote: Please see https://docs.github.com/en/get-started/getting-started-with-git/about-remote-repositories#cloning-with-https-urls for information on currently recommended modes of authentication.
fatal: Authentication failed for 'https://github.com/nkming2/MagicalGirlMica.git/'


ITER Demo folder:
Add plt file to TEST-BEAUTY project

<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<databrowser>
    <title>
        <text>Beauty Plot</text>
        <color>
            <red>0</red>
            <green>0</green>
            <blue>255</blue>
        </color>
        1|Sans|12.0|1|GTK|1|
    </title>
    <graph_settings>
        <show_title>true</show_title>
        <show_legend>true</show_legend>
        <show_plot_area_border>false</show_plot_area_border>
        <transparent>false</transparent>
    </graph_settings>
    <scroll>true</scroll>
    <update_period>3.0</update_period>
    <start>-1 hours 0.0 seconds</start>
    <end>now</end>
    <time_axis>
        <axis>
            <name>Time</name>
            1|Sans|10.0|1|GTK|1|
            <scale_font>1|Sans|10.0|0|GTK|1|</scale_font>
            <color>
                <red>0</red>
                <green>0</green>
                <blue>0</blue>
            </color>
            <min>1.36628927793E12</min>
            <max>1.36629287793E12</max>
            <log_scale>false</log_scale>
            <autoscale>true</autoscale>
            <visible>true</visible>
            <grid_line>
                <show_grid_line>false</show_grid_line>
                <dash_grid_line>true</dash_grid_line>
                <color>
                    <red>200</red>
                    <green>200</green>
                    <blue>200</blue>
                </color>
            </grid_line>
            <format>
                <auto_format>true</auto_format>
                <time_format>true</time_format>
                <format_pattern>HH:mm</format_pattern>
            </format>
        </axis>
    </time_axis>
    <background>
        <red>255</red>
        <green>255</green>
        <blue>255</blue>
    </background>
    <archive_rescale>NONE</archive_rescale>
    <axes>
        <axis>
            <name>TEST-BTY0:AIn</name>
            1|Sans|10.0|1|GTK|1|
            <scale_font>1|Sans|10.0|0|GTK|1|</scale_font>
            <color>
                <red>21</red>
                <green>21</green>
                <blue>196</blue>
            </color>
            <min>0.0</min>
            <max>108.49089341573206</max>
            <log_scale>false</log_scale>
            <autoscale>true</autoscale>
            <visible>true</visible>
            <grid_line>
                <show_grid_line>false</show_grid_line>
                <dash_grid_line>true</dash_grid_line>
                <color>
                    <red>200</red>
                    <green>200</green>
                    <blue>200</blue>
                </color>
            </grid_line>
            <format>
                <auto_format>true</auto_format>
                <time_format>false</time_format>
                <format_pattern>############.##</format_pattern>
            </format>
        </axis>
        <axis>
            <name>TEST-BTY0:RAMP1</name>
            1|Sans|10.0|1|GTK|1|
            <scale_font>1|Sans|10.0|0|GTK|1|</scale_font>
            <color>
                <red>139</red>
                <green>105</green>
                <blue>20</blue>
            </color>
            <min>-1.0000321507591365</min>
            <max>100.0</max>
            <log_scale>false</log_scale>
            <autoscale>true</autoscale>
            <visible>true</visible>
            <grid_line>
                <show_grid_line>false</show_grid_line>
                <dash_grid_line>true</dash_grid_line>
                <color>
                    <red>200</red>
                    <green>200</green>
                    <blue>200</blue>
                </color>
            </grid_line>
            <format>
                <auto_format>true</auto_format>
                <time_format>false</time_format>
                <format_pattern>############.##</format_pattern>
            </format>
        </axis>
        <axis>
            <name>TEST-BTY0:RAMP2</name>
            1|Sans|10.0|1|GTK|1|
            <scale_font>1|Sans|10.0|0|GTK|1|</scale_font>
            <color>
                <red>160</red>
                <green>32</green>
                <blue>240</blue>
            </color>
            <min>-1.0000321507591365</min>
            <max>100.0</max>
            <log_scale>false</log_scale>
            <autoscale>true</autoscale>
            <visible>true</visible>
            <grid_line>
                <show_grid_line>false</show_grid_line>
                <dash_grid_line>true</dash_grid_line>
                <color>
                    <red>200</red>
                    <green>200</green>
                    <blue>200</blue>
                </color>
            </grid_line>
            <format>
                <auto_format>true</auto_format>
                <time_format>false</time_format>
                <format_pattern>############.##</format_pattern>
            </format>
        </axis>
    </axes>
    <annotations>
    </annotations>
    <pvlist>
        <pv>
            <name>TEST-BTY0:AI1</name>
            <display_name>TEST-BTY0:AI1</display_name>
            <visible>true</visible>
            <axis>0</axis>
            <linewidth>2</linewidth>
            <color>
                <red>21</red>
                <green>21</green>
                <blue>196</blue>
            </color>
            <trace_type>AREA</trace_type>
            <waveform_index>0</waveform_index>
            <period>0.0</period>
            <ring_size>5000</ring_size>
            <request>OPTIMIZED</request>
            <archive>
                <name>rdb</name>
                <url>jdbc:postgresql://localhost/css_archive_3_0_0</url>
                <key>1</key>
            </archive>
        </pv>
        <pv>
            <name>TEST-BTY0:AI2</name>
            <display_name>TEST-BTY0:AI2</display_name>
            <visible>true</visible>
            <axis>0</axis>
            <linewidth>2</linewidth>
            <color>
                <red>242</red>
                <green>26</green>
                <blue>26</blue>
            </color>
            <trace_type>AREA</trace_type>
            <waveform_index>0</waveform_index>
            <period>0.0</period>
            <ring_size>5000</ring_size>
            <request>OPTIMIZED</request>
            <archive>
                <name>rdb</name>
                <url>jdbc:postgresql://localhost/css_archive_3_0_0</url>
                <key>1</key>
            </archive>
        </pv>
        <pv>
            <name>TEST-BTY0:AI3</name>
            <display_name>TEST-BTY0:AI3</display_name>
            <visible>true</visible>
            <axis>0</axis>
            <linewidth>2</linewidth>
            <color>
                <red>66</red>
                <green>177</green>
                <blue>66</blue>
            </color>
            <trace_type>AREA</trace_type>
            <waveform_index>0</waveform_index>
            <period>0.0</period>
            <ring_size>5000</ring_size>
            <request>OPTIMIZED</request>
            <archive>
                <name>rdb</name>
                <url>jdbc:postgresql://localhost/css_archive_3_0_0</url>
                <key>1</key>
            </archive>
        </pv>
        <pv>
            <name>TEST-BTY0:RAMP1</name>
            <display_name>TEST-BTY0:RAMP1</display_name>
            <visible>true</visible>
            <axis>1</axis>
            <linewidth>2</linewidth>
            <color>
                <red>139</red>
                <green>105</green>
                <blue>20</blue>
            </color>
            <trace_type>AREA</trace_type>
            <waveform_index>0</waveform_index>
            <period>0.0</period>
            <ring_size>5000</ring_size>
            <request>OPTIMIZED</request>
            <archive>
                <name>rdb</name>
                <url>jdbc:postgresql://localhost/css_archive_3_0_0</url>
                <key>1</key>
            </archive>
        </pv>
        <pv>
            <name>TEST-BTY0:RAMP2</name>
            <display_name>TEST-BTY0:RAMP2</display_name>
            <visible>true</visible>
            <axis>2</axis>
            <linewidth>2</linewidth>
            <color>
                <red>128</red>
                <green>0</green>
                <blue>255</blue>
            </color>
            <trace_type>AREA</trace_type>
            <waveform_index>0</waveform_index>
            <period>0.0</period>
            <ring_size>5000</ring_size>
            <request>OPTIMIZED</request>
            <archive>
                <name>rdb</name>
                <url>jdbc:postgresql://localhost/css_archive_3_0_0</url>
                <key>1</key>
            </archive>
        </pv>
    </pvlist>
</databrowser>

error: pathspec 'products/ITER/products/org.csstudio.iter.archive.engine.product/demo/m-TEST-BEAUTY/src/main/databrowser/bty0.plt' did not match any file(s) known to git


add mountainAdvection-with-height plot

add mountainAdvection-with-height plot

set xrange [0:9000]
set yrange [0:0.2]

set style data linespoints

set xlabel "Peak mountain height (m)"
set ylabel "l2 error"

set label "BTF linearUpwind" at 6200,0.08 textcolor rgb "dark-violet"
set label "BTF cubicUpwind" at 6200,0.045 textcolor rgb "dark-violet"
set label "Cut cells linearUpwind" at 6200,0.17 textcolor rgb "#009e73"
set label "Cut cells cubicUpwind" at 6200,0.07 textcolor rgb "#009e73"
set label "Slanted cells linearUpwind" at 5200,0.19 textcolor rgb "#56b4e9"
set label "Slanted cells cubicUpwind" at 6200,0.09 textcolor rgb "#56b4e9"

unset key

plot 'mountainAdvection-btf-linearUpwind-l2.dat' using 1:2 lc 1 lw 1.5 dt 2 ps 2 pt 4, \
     'mountainAdvection-btf-cubicUpwind-l2.dat' using 1:2 lc 1 lw 1.5 dt 1 ps 2 pt 5, \
     'mountainAdvection-cutCell-linearUpwind-l2.dat' using 1:2 lc 2 lw 1.5 dt 2 ps 2 pt 8, \
     'mountainAdvection-cutCell-cubicUpwind-l2.dat' using 1:2 lc 2 lw 1.5 dt 1 ps 2 pt 9, \
     'mountainAdvection-slantedCell-linearUpwind-l2.dat' using 1:2 lc 3 lw 1.5 dt 2 ps 2 pt 6, \
     'mountainAdvection-slantedCell-cubicUpwind-l2.dat' using 1:2 lc 3 lw 1.5 dt 1 ps 2 pt 7

error: pathspec 'mountainAdvection-l2.plt' did not match any file(s) known to git


Small cleanups (was a lingering locally modified file, pay it no heed)

git-svn-id: 189946a10c5fc96e9dd03ba7cba917cd4c3d09f4@127 de4796e2-0b1e-0410-91b4-86bc23549317


gnuplot sciprt for DOS

gnuplot sciprt for DOS

#!/usr/bin/gnuplot -persist
#
#
#    	G N U P L O T
#    	Version 5.0 patchlevel 7    last modified 2017-08-16
#
#    	Copyright (C) 1986-1993, 1998, 2004, 2007-2017
#    	Thomas Williams, Colin Kelley and many others
#
#    	gnuplot home:     http://www.gnuplot.info
#    	faq, bugs, etc:   type "help FAQ"
#    	immediate help:   type "help"  (plot window: hit 'h')
# set terminal wxt 0 enhanced
# set output
unset clip points
set clip one
unset clip two
set bar 1.000000 front
set border 31 front lt black linewidth 1.000 dashtype solid
set zdata
set ydata
set xdata
set y2data
set x2data
set boxwidth
set style fill  empty border
set style rectangle back fc  bgnd fillstyle   solid 1.00 border lt -1
set style circle radius graph 0.02, first 0.00000, 0.00000
set style ellipse size graph 0.05, 0.03, first 0.00000 angle 0 units xy
set dummy x, y
set format x "% h"
set format y "% h"
set format x2 "% h"
set format y2 "% h"
set format z "% h"
set format cb "% h"
set format r "% h"
set timefmt "%d/%m/%y,%H:%M"
set angles radians
set tics back
set grid nopolar
set grid xtics nomxtics ytics nomytics noztics nomztics \
 nox2tics nomx2tics noy2tics nomy2tics nocbtics nomcbtics
set grid layerdefault   lt 0 linecolor 0 linewidth 0.500,  lt 0 linecolor 0 linewidth 0.500
set raxis
set style parallel front  lt black linewidth 2.000 dashtype solid
set key title "" center
set key inside right top vertical Right noreverse enhanced autotitle nobox
set key noinvert samplen 4 spacing 1 width 0 height 0
set key maxcolumns 0 maxrows 0
set key noopaque
unset label
unset arrow
set style increment default
unset style line
unset style arrow
set style histogram clustered gap 2 title textcolor lt -1
unset object
set style textbox transparent margins  1.0,  1.0 border
unset logscale
set offsets 0, 0, 0, 0
set pointsize 1
set pointintervalbox 1
set encoding default
unset polar
unset parametric
unset decimalsign
unset micro
unset minussign
set view 60, 30, 1, 1
set samples 100, 100
set isosamples 10, 10
set surface
unset contour
set cntrlabel  format '%8.3g' font '' start 5 interval 20
set mapping cartesian
set datafile separator whitespace
unset hidden3d
set cntrparam order 4
set cntrparam linear
set cntrparam levels auto 5
set cntrparam points 5
set size ratio 0 1,1
set origin 0,0
set style data points
set style function lines
unset xzeroaxis
unset yzeroaxis
unset zzeroaxis
unset x2zeroaxis
unset y2zeroaxis
set xyplane relative 0.5
set tics scale  1, 0.5, 1, 1, 1
set mxtics default
set mytics default
set mztics default
set mx2tics default
set my2tics default
set mcbtics default
set mrtics default
set xtics border in scale 1,0.5 mirror norotate  autojustify
set xtics  norangelimit autofreq
set ytics border in scale 1,0.5 mirror norotate  autojustify
set ytics  norangelimit autofreq
set ztics border in scale 1,0.5 nomirror norotate  autojustify
set ztics  norangelimit autofreq
unset x2tics
unset y2tics
set cbtics border in scale 1,0.5 mirror norotate  autojustify
set cbtics  norangelimit autofreq
set rtics axis in scale 1,0.5 nomirror norotate  autojustify
set rtics  norangelimit autofreq
unset paxis 1 tics
unset paxis 2 tics
unset paxis 3 tics
unset paxis 4 tics
unset paxis 5 tics
unset paxis 6 tics
unset paxis 7 tics
set title ""
set title  font "" norotate
set timestamp bottom
set timestamp ""
set timestamp  font "" norotate
set rrange [ * : * ] noreverse nowriteback
set trange [ * : * ] noreverse nowriteback
set urange [ * : * ] noreverse nowriteback
set vrange [ * : * ] noreverse nowriteback
set xlabel "Pressure (GPa)"
set xlabel  font "" textcolor lt -1 norotate
set x2label ""
set x2label  font "" textcolor lt -1 norotate
set xrange [ -1.00000 : 3.00000 ] noreverse nowriteback
set x2range [ * : * ] noreverse nowriteback
set ylabel "Total density of states"
set ylabel  font "" textcolor lt -1 rotate by -270
set y2label ""
set y2label  font "" textcolor lt -1 rotate by -270
set yrange [ * : * ] noreverse nowriteback
set y2range [ * : * ] noreverse nowriteback
set zlabel ""
set zlabel  font "" textcolor lt -1 norotate
set zrange [ * : * ] noreverse nowriteback
set cblabel ""
set cblabel  font "" textcolor lt -1 rotate by -270
set cbrange [ * : * ] noreverse nowriteback
set paxis 1 range [ * : * ] noreverse nowriteback
set paxis 2 range [ * : * ] noreverse nowriteback
set paxis 3 range [ * : * ] noreverse nowriteback
set paxis 4 range [ * : * ] noreverse nowriteback
set paxis 5 range [ * : * ] noreverse nowriteback
set paxis 6 range [ * : * ] noreverse nowriteback
set paxis 7 range [ * : * ] noreverse nowriteback
set zero 1e-08
set lmargin  -1
set bmargin  -1
set rmargin  -1
set tmargin  -1
set locale "en_US.utf-8"
set pm3d explicit at s
set pm3d scansautomatic
set pm3d interpolate 1,1 flush begin noftriangles noborder corners2color mean
set palette positive nops_allcF maxcolors 0 gamma 1.5 color model RGB
set palette rgbformulae 7, 5, 15
set colorbox default
set colorbox vertical origin screen 0.9, 0.2, 0 size screen 0.05, 0.6, 0 front  noinvert bdefault
set style boxplot candles range  1.50 outliers pt 7 separation 1 labels auto unsorted
set loadpath
set fontpath
set psdir
set fit brief errorvariables nocovariancevariables errorscaling prescale nowrap v5
GNUTERM = "wxt"
x = 0.0
## Last datafile plotted: "../scf-60/DOS0"
plot 'DOS0' w l lw 2 t '0 GPa', '../scf-60/DOS0' w l lw 2 t '6 GPa'
#    EOF

error: pathspec 'matsci/project2017/pressure-doping-ferroelectrics/BTO-disp-frequency/gnuplot/plotDOS.gnu' did not match any file(s) known to git


minor

minor

git-svn-id: 6ee47c8665bf46900d9baa0afb711c5b4a0eafac@5562 e2bb083e-7f23-0410-b3a8-8253ac9ef6d8

remote: Support for password authentication was removed on August 13, 2021.
remote: Please see https://docs.github.com/en/get-started/getting-started-with-git/about-remote-repositories#cloning-with-https-urls for information on currently recommended modes of authentication.
fatal: Authentication failed for 'https://github.com/ya7lelkom/swift-k.git/'


Fix a scatter plot script

Fix a scatter plot script

#  circle_inout.inp
#
#  Draw 500 points, some inside, and some outside, the unit circle.
#
#  Choose the output device.
#
set term png medium
#
#  Name the output file.
#
set output "circle_inout.png"
#
#  Set the plot title.
#
set title "Random Points in/out of Circle"
#
#  Get grid lines.
#
set grid
#
#  Set axis labels.
#
set xlabel "<--- X --->"
set ylabel "<--- Y --->"
#
#  The following command forces X and Y axes to appear the same size.
#
set size ratio 1
#
#  Draw a unit circle, and display it BEHIND everything else.
#
set object circle center ( 0, 0 ) radius 1.0 behind
#
#  Timestamp the plot.
#
set timestamp
#
#  Plot the data using X and Y ranges [0,1],
#    using the data in 'circle_in.txt',
#    marking the data with points only (a scatter plot)
#    using line type 3 (blue)
#    and point type 4 (open square)
#  and
#    using the data in 'circle_out.txt',
#    marking the data with points only (a scatter plot)
#    using line type 1 (red)
#    and point type 3 (star)
#
plot [0:1] [0:1] "circle_in.txt" with points lt 3 pt 4, "circle_out.txt" with points lt 1 pt 3
#
#  Terminate.
#
quit

error: pathspec 'plots/scatter_cluster/scatter_cluster.gnu' did not match any file(s) known to git


Plot best results.

Plot best results.

reset # do not use any previous settings
set title "F1 score - Keyphrase extraction - Projection of POS sequences over the development data" # title
set xlabel "Min ocurrence of each POS sequence" # x-axis label
set ylabel "F1 score" # y-axis label
set term png size 1200, 700 font "Helvetica" 9
set size ratio 0.55 #plot dimensions
set output "plot_f1score.png" # name of image file
set grid y
set xtics rotate
set ytics 0.01
set yrange [0.04:0.35] writeback
set key right top
set style data linespoints # set default way of data plotting
set pointsize 1.5 # increase size of points on the line

plot "dev_seq_projection_filter_by_count.dat" using 1:5:xtic(2) title "Simple projection", \
"dev_seq_projection_filter_by_count_inkeywords_not_indomains.dat" using 1:5 title "Keywords/DiscartingIfInOtherDomain", \
"dev_seq_projection_svm_only_anntokens_four_classes.dat" using 1:5 title "SVM/4c/AnnotatedTokens", \
"dev_seq_projection_svm_only_anntokens_four_classes_cossimgt0.01.dat" using 1:5 title "SVM/4c/AnnotatedTokens/Sim>0.01", \
"dev_seq_projection_svm4c_not-none.and.maxsimgt0_or_maxsimeq0.dat" using 1:5 title "SVM/4c/AnnotatedTokens/NotNoneOrNotDecision", \
"dev_seq_projection_svm_only_anntokens_four_classes_morefeatures.dat" using 1:5 title "SVM/4c/AnnotatedTokens/MoreFeatures", \
"dev_seq_projection_svm_only_anntokens_two_classes.dat" using 1:5 title "SVM/2c/AnnotatedTokens", \
"dev_seq_projection_svm_only_anntokens_two_classes_cossimgt0.005.dat" using 1:5 title "SVM/2c/AnnotatedTokens/Sim>0.005", \
"dev_seq_projection_svm_only_anntokens_two_classes_cossimgt0.01.dat" using 1:5 title "SVM/2c/AnnotatedTokens/Sim>0.01", \
"dev_seq_projection_svm_shorttext_two_classes.dat" using 1:5 title "SVM/2c/ShortText", \
"dev_seq_projection_svm_fulltext_two_classes.dat" using 1:5 title "SVM/2c/FullText"

reset # do not use any previous settings
set title "Precision - Keyphrase extraction - Projection of POS sequences over the development data" # title
set xlabel "Min ocurrence of each POS sequence" # x-axis label
set ylabel "Precision" # y-axis label
set term png size 1200, 700 font "Helvetica" 9
set size ratio 0.55 #plot dimensions
set output "plot_precision.png" # name of image file
set grid y
set xtics rotate
set ytics 0.01
set yrange [0.04:0.35] writeback
set key right top
set style data linespoints # set default way of data plotting
set pointsize 1.5 # increase size of points on the line
plot "dev_seq_projection_filter_by_count.dat" using 1:3:xtic(2) title "Simple projection", \
"dev_seq_projection_filter_by_count_inkeywords_not_indomains.dat" using 1:3 title "Keywords/DiscartingIfInOtherDomain", \
"dev_seq_projection_svm_only_anntokens_four_classes.dat" using 1:3 title "SVM/4c/AnnotatedTokens", \
"dev_seq_projection_svm_only_anntokens_four_classes_cossimgt0.01.dat" using 1:3 title "SVM/4c/AnnotatedTokens/Sim>0.01", \
"dev_seq_projection_svm4c_not-none.and.maxsimgt0_or_maxsimeq0.dat" using 1:3 title "SVM/4c/AnnotatedTokens/NotNoneOrNotDecision", \
"dev_seq_projection_svm_only_anntokens_four_classes_morefeatures.dat" using 1:3 title "SVM/4c/AnnotatedTokens/MoreFeatures", \
"dev_seq_projection_svm_only_anntokens_two_classes.dat" using 1:3 title "SVM/2c/AnnotatedTokens", \
"dev_seq_projection_svm_only_anntokens_two_classes_cossimgt0.005.dat" using 1:3 title "SVM/2c/AnnotatedTokens/Sim>0.005", \
"dev_seq_projection_svm_only_anntokens_two_classes_cossimgt0.01.dat" using 1:3 title "SVM/2c/AnnotatedTokens/Sim>0.01", \
"dev_seq_projection_svm_shorttext_two_classes.dat" using 1:3 title "SVM/2c/ShortText", \
"dev_seq_projection_svm_fulltext_two_classes.dat" using 1:3 title "SVM/2c/FullText"

reset # do not use any previous settings
set title "Recall - Keyphrase extraction - Projection of POS sequences over the development data" # title
set xlabel "Min ocurrence of each POS sequence" # x-axis label
set ylabel "Recall" # y-axis label
set term png size 1200, 700 font "Helvetica" 9
set size ratio 0.55 #plot dimensions
set output "plot_recall.png" # name of image file
set grid y
set xtics rotate
set ytics 0.05
set yrange [0.05:1.0] writeback
set key right top
set style data linespoints # set default way of data plotting
set pointsize 1.5 # increase size of points on the line

plot "dev_seq_projection_filter_by_count.dat" using 1:4:xtic(2) title "Simple projection", \
"dev_seq_projection_filter_by_count_inkeywords_not_indomains.dat" using 1:4 title "Keywords/DiscartingIfInOtherDomain", \
"dev_seq_projection_svm_only_anntokens_four_classes.dat" using 1:4 title "SVM/4c/AnnotatedTokens", \
"dev_seq_projection_svm_only_anntokens_four_classes_cossimgt0.01.dat" using 1:4 title "SVM/4c/AnnotatedTokens/Sim>0.01", \
"dev_seq_projection_svm4c_not-none.and.maxsimgt0_or_maxsimeq0.dat" using 1:4 title "SVM/4c/AnnotatedTokens/NotNoneOrNotDecision", \
"dev_seq_projection_svm_only_anntokens_four_classes_morefeatures.dat" using 1:4 title "SVM/4c/AnnotatedTokens/MoreFeatures", \
"dev_seq_projection_svm_only_anntokens_two_classes.dat" using 1:4 title "SVM/2c/AnnotatedTokens", \
"dev_seq_projection_svm_only_anntokens_two_classes_cossimgt0.005.dat" using 1:4 title "SVM/2c/AnnotatedTokens/Sim>0.005", \
"dev_seq_projection_svm_only_anntokens_two_classes_cossimgt0.01.dat" using 1:4 title "SVM/2c/AnnotatedTokens/Sim>0.01", \
"dev_seq_projection_svm_shorttext_two_classes.dat" using 1:4 title "SVM/2c/ShortText", \
"dev_seq_projection_svm_fulltext_two_classes.dat" using 1:4 title "SVM/2c/FullText"

error: pathspec 'kpext/results/plot_best_results.gnu' did not match any file(s) known to git


production boxplot

production boxplot

error: pathspec 'graphs/avgday_p.gp' did not match any file(s) known to git


Docker: Reduced Dockerfile for running builds on GHActions.

The reduced Docker image only contains GCC and other
open-source tools but no commercial ones.

# Due to bandwidth limitation, we need to keep the base image into our
# Artifactory Docker Registry. Because we have more than one registry,
# we need to set during build time which Artifactory Docker Registry to use.
ARG DOCKER_REGISTRY
FROM ${DOCKER_REGISTRY}/ubuntu:focal

# install packages from official Ubuntu repo
ENV DEBIAN_FRONTEND=noninteractive
RUN apt-get update && \
    apt-get install --no-install-recommends -y \
        bc \
        build-essential \
        curl \
        dos2unix \
        git \
        lib32stdc++6 \
        mscgen \
        p7zip-full \
        python3 \
        python3-pip \
        tar \
        unzip \
        wget \
        libxml2-utils \
        zip && \
    apt-get autoremove -y && \
    apt-get autoclean -y && \
    rm -rf /var/lib/apt/lists/*

# Create build ARGs for installer files & versions
ARG GCC=gcc-arm-none-eabi-10-2020-q4-major-x86_64-linux.tar.bz2

# Including dependency folder
ARG DEPENDENCIESFOLDER=dependenciesFiles
ARG TOOLS_PATH=/opt
ARG INSTALLER_PATH=/tmp/dependenciesFiles
RUN mkdir -p ${INSTALLER_PATH}
COPY dependenciesFiles/${GCC} ${INSTALLER_PATH}/${GCC}
COPY dependenciesFiles/buildtools ${TOOLS_PATH}/buildtools
COPY dependenciesFiles/python-matrix-runner ${INSTALLER_PATH}/python-matrix-runner

# install & setup gcc
RUN mkdir -p ${TOOLS_PATH}
WORKDIR ${TOOLS_PATH}
RUN tar -xvf ${INSTALLER_PATH}/${GCC}
ENV PATH=${PATH}:${TOOLS_PATH}/gcc-arm-none-eabi-10-2020-q4-major/bin
ENV CI_GCC_TOOLCHAIN_ROOT=${TOOLS_PATH}/gcc-arm-none-eabi-10-2020-q4-major/bin
WORKDIR /

# install Python requirements
COPY requirements.txt ${INSTALLER_PATH}/
RUN python3 -m pip install --no-cache-dir -r ${INSTALLER_PATH}/requirements.txt

# install buildtools
RUN python3 -m pip install --no-cache-dir -r ${TOOLS_PATH}/buildtools/requirements.txt
COPY rtebuild /root/.rtebuild
ENV PATH=${PATH}:${TOOLS_PATH}/buildtools

# install python-matrix-runner
# hadolint disable=DL3013
RUN python3 -m pip install ${INSTALLER_PATH}/python-matrix-runner

# remove dependency folder
RUN rm -rf ${INSTALLER_PATH}

CMD ["bash"]

error: pathspec 'docker/dockerfile.gnu' did not match any file(s) known to git


Add gnuplot script to make plots for presentation

git-svn-id: b233c5b81dcfbfdfca783093b3213ccfd2356b3a@812 3eb578c0-666c-0410-8428-3510748880ad

### @plot sp-DF-g0.04
unset key
set xlabel "q"
set ylabel "DF" offset 2,0
set yr[0:]
set terminal postscript eps enhanced color font "Helvetica" 30 size 12, 4.5
set output 'sp-DF-g0.04-big-presentation-big.eps'
set multiplot
set label "uniaxial" at graph 0.05, graph 0.05
set label "planar" at graph 0.85, graph 0.05
set size 0.5, 1
set origin 0., 0.
set lmargin 8
set rmargin 0
plot 'up-sp-DF-g4.d-2.txt' u 2:5 pt 7 ps 2 t '0.04'
unset label
unset ylabel
#set ylabel "DF/Ca"
set yr[0:]
set origin 0.45, 0.
#set title "Figure 7b"
set lmargin 8
set rmargin 2
set format y ""
set label "biaxial" at graph 0.05, graph 0.05
set label "planar" at graph 0.7, graph 0.05
plot 'bp-sp-DF-g4.d-2.txt' u 2:5 pt 7 ps 2 t '0.04'
unset label
unset format
set nomultiplot
unset output
unset size
unset origin

### @plot sp-all-g0.04
#unset key
#set yr[0:]
unset xtics
set output 'sp-all-g0.04-presentation.eps'
set terminal postscript eps enhanced color font "Helvetica" 30 size 12, 4.5
set multiplot
set size 0.25, 0.5
set format x ""
unset xlabel
set ylabel "DF" offset 2,0
set origin 0., 0.5
set lmargin 8
set rmargin 0
plot 'up-sp-DF-g4.d-2.txt' u 2:5 pt 7 ps 2 t '0.04'
# unset ylabel
# set yr[0:]
set origin 0.225, 0.5
set lmargin 8
set rmargin 2
unset ylabel
set format y ""
plot 'bp-sp-DF-g4.d-2.txt' u 2:5 pt 7 ps 2 t '0.04'
unset format
set format x ""

set ylabel "{/Symbol D}A/A (%)" offset 2,0
set origin 0.5, 0.5
set lmargin 8
set rmargin 0
sp_area_0 = 3.57416564718625807E+02
plot 'up-sp-area-g4.d-2.txt' u 2:(($6-sp_area_0)/sp_area_0*100) pt 7 ps 2 t '0.04'
# unset ylabel
# set yr[0:]
set origin 0.725, 0.5
set lmargin 8
set rmargin 2
unset ylabel
set format y ""
plot 'bp-sp-area-g4.d-2.txt' u 2:(($6-sp_area_0)/sp_area_0*100) pt 7 ps 2 t '0.04'
unset format

set ylabel "{/Symbol t}" offset 2,0
set origin 0., 0.
set lmargin 8
set rmargin 0
set yr[0:0.25]
set label "uniaxial" at graph 0.05, graph -0.06
set label "planar" at graph 0.70, graph -0.06
plot 'up-sp-tau-g4.d-2.txt' u ($0/10.):3 pt 7 ps 2 t '0.04'
unset label
# unset ylabel
set origin 0.225, 0.
set lmargin 8
set rmargin 2
unset ylabel
set format y ""
set label "biaxial" at graph 0.05, graph -0.06
set label "planar" at graph 0.70, graph -0.06
plot 'bp-sp-tau-g4.d-2.txt' u ($0/10.):3 pt 7 ps 2 t '0.04'
unset label
unset format
set yr[0:*]

set ylabel "(Strain energy){/Symbol \264}1000" offset 2,0
set origin 0.5, 0.
set lmargin 8
set rmargin 0
set label "uniaxial" at graph 0.05, graph -0.06
set label "planar" at graph 0.7, graph -0.06
plot 'up-sp-W-g4.d-2.txt' u ($0/10.):($1*1000.) pt 7 ps 2 t '0.04'
unset label
# unset ylabel
# set yr[0:]
set origin 0.725, 0.
set lmargin 8
set rmargin 2
unset ylabel
set format y ""
set label "biaxial" at graph 0.05, graph -0.06
set label "planar" at graph 0.7, graph -0.06
plot 'bp-sp-W-g4.d-2.txt' u ($0/10.):($1*1000.) pt 7 ps 2 t '0.04'
unset label
unset format
set nomultiplot
unset output
unset size
unset origin

### @plot sp-all-varyca
#unset key
#set yr[0:]
set output 'sp-all-varyca-presentation.eps'
set multiplot
set size 0.25, 0.5
set format x ""
unset xlabel
set ylabel "DF/Ca" offset 2,0
set origin 0., 0.5
set lmargin 8
set rmargin 0
plot 'up-sp-DF-g1.d-2.txt' u 2:($5/0.01) pt 1 ps 2 lw 6 t '0.01', 'up-sp-DF-g2.d-2.txt' u 2:($5/0.02) pt 5 ps 2 t '0.02', 'up-sp-DF-g4.d-2.txt' u 2:($5/0.04) pt 7 ps 2 t '0.04'
set origin 0.225, 0.5
set lmargin 8
set rmargin 2
unset ylabel
set format y ""
plot 'bp-sp-DF-g1.d-2.txt' u 2:($5/0.01) pt 1 ps 2 lw 6 t '0.01', 'bp-sp-DF-g2.d-2.txt' u 2:($5/0.02) pt 5 ps 2 t '0.02', 'bp-sp-DF-g4.d-2.txt' u 2:($5/0.04) pt 7 ps 2 t '0.04'
unset format
set format x ""

set ylabel "{/Symbol D}A/(1000 A Ca^2) (a%)" offset 2,0
set origin 0.5, 0.5
set lmargin 8
set rmargin 0
sp_area_0 = 3.57416564718625807E+02
plot 'up-sp-area-g1.d-2.txt' u 2:(($6-sp_area_0)/sp_area_0*100/0.01**2/1000) pt 1 ps 2 lw 6 t '0.01', 'up-sp-area-g2.d-2.txt' u 2:(($6-sp_area_0)/sp_area_0*100/0.02**2/1000) pt 5 ps 2 t '0.02', 'up-sp-area-g4.d-2.txt' u 2:(($6-sp_area_0)/sp_area_0*100/0.04**2/1000) pt 7 ps 2 t '0.04'
# unset ylabel
# set yr[0:]
set origin 0.725, 0.5
set lmargin 8
set rmargin 2
unset ylabel
set format y ""
plot 'bp-sp-area-g1.d-2.txt' u 2:(($6-sp_area_0)/sp_area_0*100/0.01**2/1000) pt 1 ps 2 lw \
6 t '0.01', 'bp-sp-area-g2.d-2.txt' u 2:(($6-sp_area_0)/sp_area_0*100/0.02**2/1000) pt 5 ps 2 t '0.02', 'bp-sp-area-g4.d-2.txt' u 2:(($6-sp_area_0)/sp_area_0*100/0.04**2/1000) pt 7 ps 2 t '0.04'
unset format

set ylabel "{/Symbol t}/Ca" offset 2,0
set origin 0., 0.
set lmargin 8
set rmargin 0
set yr[0:.35]
set label "uniaxial" at graph 0.05, graph -0.06
set label "planar" at graph 0.7, graph -0.06
plot 'up-sp-tau-g1.d-2.txt' u ($0/10.):3 pt 1 ps 2 lw 6 t '0.01', 'up-sp-tau-g2.d-2.txt' u ($0/10.):3 pt 5 ps 2 t '0.02', 'up-sp-tau-g4.d-2.txt' u ($0/10.):3 pt 7 ps 2 t '0.04'
unset label
set origin 0.225, 0.
set lmargin 8
set rmargin 2
unset ylabel
set format y ""
set label "biaxial" at graph 0.05, graph -0.06
set label "planar" at graph 0.7, graph -0.06
plot 'bp-sp-tau-g1.d-2.txt' u ($0/10.):3 pt 1 ps 2 lw 6 t '0.01', 'bp-sp-tau-g2.d-2.txt' u ($0/10.):3 pt 5 ps 2 t '0.02', 'bp-sp-tau-g4.d-2.txt' u ($0/10.):3 pt 7 ps 2 t '0.04'
unset label
unset format
set yr[0:*]

set ylabel "(Strain energy)/Ca^2" offset 1,0
set origin 0.5, 0.
set lmargin 8
set rmargin 0
set label "uniaxial" at graph 0.05, graph -0.06
set label "planar" at graph 0.7, graph -0.06
plot 'up-sp-W-g1.d-2.txt' u ($0/10.):($1/0.01**2) pt 1 ps 2 lw 6 t '0.01', \
    'up-sp-W-g2.d-2.txt' u ($0/10.):($1/0.02**2) pt 5 ps 2 t '0.02', \
    'up-sp-W-g4.d-2.txt' u ($0/10.):($1/0.04**2) pt 7 ps 2 t '0.04'
unset label
# set yr[0:]
set origin 0.725, 0.
set lmargin 8
set rmargin 2
unset ylabel
set format y ""
set label "biaxial" at graph 0.05, graph -0.06
set label "planar" at graph 0.7, graph -0.06
plot 'bp-sp-W-g1.d-2.txt' u ($0/10.):($1/0.01**2) pt 1 ps 2 lw 6 t '0.01', 'bp-sp-W-g2.d-2.txt' u ($0/10.):($1/0.02**2) pt 5 ps 2 t '0.02', 'bp-sp-W-g4.d-2.txt' u \
($0/10.):($1/0.04**2) pt 7 ps 2 t '0.04'
unset label
unset format
set nomultiplot
unset output
unset size
unset origin

### @plot varyshape-all-g0.04-presentation
#unset key
#set yr[0:]
set output 'varyshape-all-g0.04-presentation.eps'
set multiplot
set size 0.25, 0.5
set format x ""
unset xlabel
set ylabel "DF" offset 2,0
set origin 0., 0.5
set lmargin 8
set rmargin 0
plot 'up-sp-DF.txt' u 2:5 pt 1 ps 2 lw 6 t 'Sphere', 'up-pr-DF.txt' u 2:(($7-$6*2)/($7+$6*2)) pt 5 ps 2 t 'Prolate', 'up-ob-DF.txt' u 2:(($7-$6*2)/($7+$6*2)) pt 7 ps 2 t 'Oblate'
unset label
# set yr[0:]
set origin 0.225, 0.5
set lmargin 8
set rmargin 2
unset ylabel
set format y ""
plot 'bp-sp-DF.txt' u 2:5 pt 1 ps 2 lw 6 t 'Sphere', 'bp-pr-DF.txt' u 2:(($7-$6*2)/($7+$6*2)) pt 5 ps 2 t 'Prolate', 'bp-ob-DF.txt' u 2:(($7-$6*2)/($7+$6*2)) pt 7 ps 2 t 'Oblate'
unset format
set format x ""

set ylabel "{/Symbol D}A/A (%)" offset 2,0
set origin 0.5, 0.5
set lmargin 8
set rmargin 0
sp_area_0 = 3.57416564718625807E+02
pr_area_0 = sp_area_0
ob_area_0 = sp_area_0
#pr_area_0 = 3.05626567372839816E+02
#ob_area_0 = 3.28995251894758781E+02
plot 'up-sp-area.txt' u 2:(($6-sp_area_0)/sp_area_0*100) pt 1 ps 2 lw 6 t 'Sphere','up-pr-area.txt' u 2:(($6-pr_area_0)/pr_area_0*100) pt 5 ps 2 t 'Prolate', 'up-ob-area.txt' u 2:(($6-ob_area_0)/ob_area_0*100) pt 7 ps 2 t 'Oblate'
# unset ylabel
# set yr[0:]
set origin 0.725, 0.5
set lmargin 8
set rmargin 2
unset ylabel
set format y ""
plot 'bp-sp-area.txt' u 2:(($6-sp_area_0)/sp_area_0*100) pt 1 ps 2 lw 6 t 'Sphere', 'bp-pr-area.txt' u 2:(($6-pr_area_0)/pr_area_0*100) pt 5 ps 2 t 'Prolate', 'bp-ob-area.txt' u 2:(($6-ob_area_0)/ob_area_0*100) pt 7 ps 2 t 'Oblate'
unset format

set ylabel "{/Symbol t}" offset 2,0
set origin 0., 0.
set lmargin 8
set rmargin 0
set yr[0:0.25]
set label "uniaxial" at graph 0.05, graph -0.06
set label "planar" at graph 0.70, graph -0.06
plot 'up-sp-tau.txt' u ($0/10.):3 pt 1 ps 2 lw 6 t 'Sphere', 'up-pr-tau.txt' u ($0/10.):3 pt 5 ps 2 t 'Prolate', 'up-ob-tau.txt' u \
($0/10.):3 pt 7 ps 2 t 'Oblate'
unset label
set origin 0.225, 0.
set lmargin 8
set rmargin 2
unset ylabel
set format y ""
set label "biaxial" at graph 0.05, graph -0.06
set label "planar" at graph 0.70, graph -0.06
plot 'bp-sp-tau.txt' u ($0/10.):3 pt 1 ps 2 lw 6 t 'Sphere', 'bp-pr-tau.txt' u ($0/10.):3 pt 5 ps 2 t 'Prolate', 'bp-ob-tau.txt' u ($0/10.):3 pt 7 ps 2 t 'Oblate'
unset label
unset format
set yr[0:*]

set ylabel "(Strain energy){/Symbol \264}1000" offset 2,0
set origin 0.5, 0.
set lmargin 8
set rmargin 0
set label "uniaxial" at graph 0.05, graph -0.06
set label "planar" at graph 0.70, graph -0.06
plot 'up-sp-W.txt' u ($0/10.):($1*1000.) pt 1 ps 2 lw 6 t 'Sphere', 'up-pr-W.txt' u ($0/10.):($1*1000.) pt 5 ps 2 t 'Prolate', 'up-ob-W.txt' u \
($0/10.):($1*1000.) pt 7 ps 2 t 'Oblate'
unset label
# set yr[0:]
set origin 0.725, 0.
set lmargin 8
set rmargin 2
unset ylabel
set format y ""
set label "biaxial" at graph 0.05, graph -0.06
set label "planar" at graph 0.70, graph -0.06
plot 'bp-sp-W.txt' u ($0/10.):($1*1000.) pt 1 ps 2 lw 6 t 'Sphere', 'bp-pr-W.txt' u ($0/10.):($1*1000.) pt 5 ps 2 t 'Prolate', 'bp-ob-W.txt' u ($0/10.):($1*1000.) pt 7 ps 2 t 'Oblate'
unset label
unset format
set nomultiplot
unset output
unset size
unset origin

error: pathspec 'gnuplot_scripts/presentation-figures.gp' did not match any file(s) known to git


animation X11

animation X11

remote: Support for password authentication was removed on August 13, 2021.
remote: Please see https://docs.github.com/en/get-started/getting-started-with-git/about-remote-repositories#cloning-with-https-urls for information on currently recommended modes of authentication.
fatal: Authentication failed for 'https://github.com/maxiiss/SHEEPS.git/'


Such pretty!

Such pretty!

remote: Support for password authentication was removed on August 13, 2021.
remote: Please see https://docs.github.com/en/get-started/getting-started-with-git/about-remote-repositories#cloning-with-https-urls for information on currently recommended modes of authentication.
fatal: Authentication failed for 'https://github.com/zorotools/sassy.git/'


add gnuplot plotting file

add gnuplot plotting file

set datafile separator ","
set yrange[0:1200]

plot \
"healthy_person1_converted.csv" using 3 with lines, \
"healthy_person2_converted.csv" using 3 with lines, \
"healthy_person3_converted.csv" using 3 with lines, \
"healthy_person4_converted.csv" using 3 with lines, \
"disease_person1_converted.csv" using 3 with lines, \
"disease_person2_converted.csv" using 3 with lines, \
"disease_person3_converted.csv" using 3 with lines

error: pathspec 'data/test.plt' did not match any file(s) known to git


Update makefile

Update makefile


Add gnuplot plotting.

Add gnuplot plotting.

set terminal pngcairo transparent enhanced font "arial,10" fontscale 1.0 size 500, 350
set output 'data.png'
#set key inside left top box linetype -1 linewidth 1.000
unset key
set samples 50
set title "40-bit one max"
set xlabel "Generation"
set ylabel "Fitness"
S = 1
plot "data.dat" u 1:2:3 t "Average + std.dev" w yerrorlines lc rgb 'blue', \
     "data.dat" u 1:4 t "Max" w l lc rgb 'web-green', \
     "data.dat" u 1:5 t "Min" w l lc rgb 'dark-red'

error: pathspec 'plotting.gnu' did not match any file(s) known to git


Added plot script

Added plot script

# run with:
# gnuplot -e "filename='<path to profile>'" plot.gnuplot

set datafile separator '\t'

set xlabel 'Time (s)'
set xtics rotate

set ylabel 'Memory (kB)'

set grid

set key autotitle columnhead
set key right bottom

set terminal qt persist

plot filename using 1:2 with lines, '' using 1:3 with lines, '' using 1:4 with lines, '' using 1:5 with lines

error: pathspec 'scripts/plot.gnuplot' did not match any file(s) known to git


from err65_dots_in_dashes.jnl

from err65_dots_in_dashes.jnl

git-svn-id: 0ef30dc7da0b07cedfa074587325a6c153c0ae55@11317 fdbf22ae-c210-0410-be80-ca943da6b8f8

error: pathspec 'bench/metafile_masters_v66_x86/dashbug.plt' did not match any file(s) known to git


Let's keep this around for future testing.

git-svn-id: a3e1eb16dde062992de22c830ed8045c8013209a@531 c613c5cb-e716-0410-b11b-feb51c14d237

# a handy gnuplot instruction set for plotting percentiler dumps
set ylabel 'Count'
set y2label 'Percentile'
set y2tics
set grid
plot 'pctile.data' using 1:3 axes x1y1 title 'Count' with histeps, \
     'pctile.data' using 1:2 axes x1y2 title 'Pecentile' with lines;

error: pathspec 'etc/pctile.plot' did not match any file(s) known to git