{"commit":"78cdbdc129726cdc1392482df53c62b445dcdd81","subject":"add dawnbin to matlab default path","message":"add dawnbin to matlab default path\n","repos":"dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim","old_file":"fmri.matlab","new_file":"fmri.matlab","new_contents":"%------------ FreeSurfer -----------------------------%\nfshome = getenv('FREESURFER_HOME');\nfsmatlab = sprintf('%s\/matlab',fshome);\nif (exist(fsmatlab) == 7)\n    path(path,fsmatlab);\nend\nclear fshome fsmatlab;\n%-----------------------------------------------------%\n\n%------------ FreeSurfer FAST ------------------------%\nfsfasthome = getenv('FSFAST_HOME');\nfsfasttoolbox = sprintf('%s\/toolbox',fsfasthome);\nif (exist(fsfasttoolbox) == 7)\n    path(path,fsfasttoolbox);\nend\nclear fsfasthome fsfasttoolbox;\n%-----------------------------------------------------%\n\nuser=getenv('USER');\nif strcmp(user, 'xst833'),\n    home = getenv('HOME');\nelse\n    user,\n    home = '\/home\/xst833\/';\nend\n\naddpath(genpath(sprintf('%s\/fmri\/afni.matlab\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/bct.20121204\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/nbs1.2\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/gretna\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/spm8\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/surfstat\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/panda\/PANDA\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/matlab\/gift\/GroupICATv3.0a\/icatb',home)));\naddpath(genpath(sprintf('%s\/fmri\/matlab\/rest\/REST\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/matlab\/mlsp\/',home)));\naddpath((sprintf('%s\/fmri\/matlab\/m2html\/',home)));\naddpath((sprintf('%s\/fmri\/matlab\/BrainNetViewer\/',home)));\naddpath((sprintf('%s\/fmri\/matlab\/eig3\/',home)));\naddpath((sprintf('%s\/fmri\/matlab\/export_fig\/',home)));\n\naddpath((sprintf('%s\/dawn\/bin\/',home)));\nclear home;\n\n%function filter_path(pattern)\npattern='.git';\nall = path;\n[entries] = regexp(all, '([^:]+):', 'tokens');\nfor i = 1:length(entries)\n     entry = char(entries{i});\n     if (~isempty(strfind(entry, pattern)))\n         rmpath(entry);\n     end;\nend;\nclear all pattern entry entries;\n\n","old_contents":"%------------ FreeSurfer -----------------------------%\nfshome = getenv('FREESURFER_HOME');\nfsmatlab = sprintf('%s\/matlab',fshome);\nif (exist(fsmatlab) == 7)\n    path(path,fsmatlab);\nend\nclear fshome fsmatlab;\n%-----------------------------------------------------%\n\n%------------ FreeSurfer FAST ------------------------%\nfsfasthome = getenv('FSFAST_HOME');\nfsfasttoolbox = sprintf('%s\/toolbox',fsfasthome);\nif (exist(fsfasttoolbox) == 7)\n    path(path,fsfasttoolbox);\nend\nclear fsfasthome fsfasttoolbox;\n%-----------------------------------------------------%\n\nuser=getenv('USER');\nif strcmp(user, 'xst833'),\n    home = getenv('HOME');\nelse\n    user,\n    home = '\/home\/xst833\/';\nend\n\naddpath(genpath(sprintf('%s\/fmri\/afni.matlab\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/bct.20121204\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/nbs1.2\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/gretna\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/spm8\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/surfstat\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/panda\/PANDA\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/matlab\/gift\/GroupICATv3.0a\/icatb',home)));\naddpath(genpath(sprintf('%s\/fmri\/matlab\/rest\/REST\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/matlab\/mlsp\/',home)));\naddpath((sprintf('%s\/fmri\/matlab\/m2html\/',home)));\naddpath((sprintf('%s\/fmri\/matlab\/BrainNetViewer\/',home)));\naddpath((sprintf('%s\/fmri\/matlab\/eig3\/',home)));\naddpath((sprintf('%s\/fmri\/matlab\/export_fig\/',home)));\nclear home;\n\n%function filter_path(pattern)\npattern='.git';\nall = path;\n[entries] = regexp(all, '([^:]+):', 'tokens');\nfor i = 1:length(entries)\n     entry = char(entries{i});\n     if (~isempty(strfind(entry, pattern)))\n         rmpath(entry);\n     end;\nend;\nclear all pattern entry entries;\n\n","returncode":0,"stderr":"","license":"apache-2.0","lang":"Matlab"}
{"commit":"decb027f45dd5316d498b9df64348fae68cb7310","subject":"added matlab kmeans script","message":"added matlab kmeans script\n","repos":"Mletter1\/Challenge1,Mletter1\/Challenge1,Mletter1\/Challenge1,Mletter1\/Challenge1","old_file":"Code Repo\/Part 4 - Clustering\/kmeans.matlab","new_file":"Code Repo\/Part 4 - Clustering\/kmeans.matlab","new_contents":"","old_contents":"","returncode":0,"stderr":"unknown","license":"apache-2.0","lang":"Matlab"}
{"commit":"dfa59dc43eac81d1d0d859edc3187d0275c8d8e0","subject":"minor compatibility change","message":"minor compatibility change\n","repos":"dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim","old_file":"fmri.matlab","new_file":"fmri.matlab","new_contents":"if ~isdeployed,\n\nself=mfilename('fullpath');\nmatlabver = version('-release');\ncself=[mfilename('fullpath'),'_', matlabver , '_cache.m'];\ncmd=['test ', cself, ' -nt ', self '.m && echo 1 || echo 0'];\n[~, snewer]=system(cmd);\nif 1==str2num(snewer), %if cache is newer than me\n    fprintf(2, 'Loading cached startup path: %s\\n', cself);\n    %load cache\n    pd=pwd;  [pathn, scriptn]=fileparts(cself);\n    cd(pathn); \n    eval(sprintf('npath=%s;', scriptn)); path(npath);\n    addpath(pathn);  \n    cd(pd);\n    clear self snewer cself pd pathn scriptn npath\n    return\nend %if cself does not exist, it is Ok, system will think it fails to be newer!\n\n%------------ FreeSurfer -----------------------------%\nfshome = getenv('FREESURFER_HOME');\nfsmatlab = sprintf('%s\/matlab',fshome);\nif (exist(fsmatlab) == 7)\n    path(path,fsmatlab);\nend\nclear fshome fsmatlab;\n%-----------------------------------------------------%\n\n%------------ FreeSurfer FAST ------------------------%\nfsfasthome = getenv('FSFAST_HOME');\nfsfasttoolbox = sprintf('%s\/toolbox',fsfasthome);\nif (exist(fsfasttoolbox) == 7)\n    path(path,fsfasttoolbox);\nend\nclear fsfasthome fsfasttoolbox;\n%-----------------------------------------------------%\n\nuser=getenv('USER'),\nnode=getenv('HOSTNAME'),\n%if strcmp(user, 'xst833'),\nif ismember(user, {'xst833', 'tbp688', 'dawnsong', 'songx4'})\n    home = getenv('HOME'),\nelse\n    home = '\/home\/xst833\/';\nend\n\nfmriTools={\n'fmri\/afni.matlab';\n'fmri\/bct.20121204';\n'fmri\/nbs1.2';\n'fmri\/gretna';\n% 'spm12';\n% 'spm12\/toolbox\/cat12';\n'fmri\/spm8';\n'fmri\/spm8\/toolbox\/vbm8';\n'fmri\/surfstat';\n'fmri\/panda\/PANDA';\n'matlab\/gift\/GroupICATv4.0a\/icatb';\n'matlab\/rest\/REST';\n'matlab\/mlsp';\n'matlab\/m2thml';\n'matlab\/BrainNetViewer';\n'matlab\/eig3';\n'matlab\/export_fig';\n'matlab\/ite\/code';\n'matlab\/jsonlab';\n%'matlab\/MIToolbox';\n};\nfor i=1:size(fmriTools, 1),\n    dir=sprintf(['%s\/' fmriTools{i}], home);\n    if exist(dir, 'dir'),\n        addpath(genpath(dir));\n        fprintf(2, sprintf('# Added path: %s\\n', dir));\n    else\n        fprintf(2, sprintf('## Cannot find dir: %s\\n', dir));\n    end\nend\n\n%add my bin path\ndawnbind= getenv('DAWNBIND');\naddpath(genpath(dawnbind));\nclear home fmriTools;\n\nfprintf(2, sprintf('#Cleaning .git .svn dirs\\n'));\n%function filter_path(pattern)\npattern={'.git', '.svn'};\nall = path;\n[entries] = regexp(all, '([^:]+):', 'tokens');\nfor i = 1:length(entries)\n    entry = char(entries{i});\n    for j=1:length(pattern),\n         if (~isempty(strfind(entry, pattern{j})))\n             rmpath(entry);\n         end;\n    end\nend;\nclear all pattern entry entries;\n\n\nsavepath(cself)\nclear self cself snewer\n%else %~isdeployed\n%    fprintf('I am deployed')\n\n%set default figure settings \nset(0, 'defaultTextFontSize', 16)\nset(0, 'defaultLineLineWidth', 2)\nset(0, 'defaultAxesFontSize', 16)\n\nend \n","old_contents":"if ~isdeployed,\n\nself=mfilename;\nmatlabver = version('-release');\ncself=[mfilename('fullpath'),'_', matlabver , '_cache.m'];\n[~, snewer]=system(['test ', cself, ' -nt ', self ' && echo 1 || echo 0']);\nif 1==str2num(snewer), %if cache is newer than me\n    fprintf(2, 'Loading cached startup path: %s\\n', cself);\n    %load cache\n    pd=pwd;  [pathn, scriptn]=fileparts(cself);\n    cd(pathn); \n    eval(sprintf('npath=%s;', scriptn)); path(npath);\n    addpath(pathn);  \n    cd(pd);\n    clear self snewer cself pd pathn scriptn npath\n    return\nend %if cself does not exist, it is Ok, system will think it fails to be newer!\n\n%------------ FreeSurfer -----------------------------%\nfshome = getenv('FREESURFER_HOME');\nfsmatlab = sprintf('%s\/matlab',fshome);\nif (exist(fsmatlab) == 7)\n    path(path,fsmatlab);\nend\nclear fshome fsmatlab;\n%-----------------------------------------------------%\n\n%------------ FreeSurfer FAST ------------------------%\nfsfasthome = getenv('FSFAST_HOME');\nfsfasttoolbox = sprintf('%s\/toolbox',fsfasthome);\nif (exist(fsfasttoolbox) == 7)\n    path(path,fsfasttoolbox);\nend\nclear fsfasthome fsfasttoolbox;\n%-----------------------------------------------------%\n\nuser=getenv('USER'),\nnode=getenv('HOSTNAME'),\n%if strcmp(user, 'xst833'),\nif ismember(user, {'xst833', 'tbp688', 'dawnsong', 'songx4'})\n    home = getenv('HOME'),\nelse\n    home = '\/home\/xst833\/';\nend\n\nfmriTools={\n'fmri\/afni.matlab';\n'fmri\/bct.20121204';\n'fmri\/nbs1.2';\n'fmri\/gretna';\n% 'spm12';\n% 'spm12\/toolbox\/cat12';\n'fmri\/spm8';\n'fmri\/spm8\/toolbox\/vbm8';\n'fmri\/surfstat';\n'fmri\/panda\/PANDA';\n'matlab\/gift\/GroupICATv4.0a\/icatb';\n'matlab\/rest\/REST';\n'matlab\/mlsp';\n'matlab\/m2thml';\n'matlab\/BrainNetViewer';\n'matlab\/eig3';\n'matlab\/export_fig';\n'matlab\/ite\/code';\n'matlab\/jsonlab';\n%'matlab\/MIToolbox';\n};\nfor i=1:size(fmriTools, 1),\n    dir=sprintf(['%s\/' fmriTools{i}], home);\n    if exist(dir, 'dir'),\n        addpath(genpath(dir));\n        fprintf(2, sprintf('# Added path: %s\\n', dir));\n    else\n        fprintf(2, sprintf('## Cannot find dir: %s\\n', dir));\n    end\nend\n\n%add my bin path\ndawnbind= getenv('DAWNBIND');\naddpath(genpath(dawnbind));\nclear home fmriTools;\n\nfprintf(2, sprintf('#Cleaning .git .svn dirs\\n'));\n%function filter_path(pattern)\npattern={'.git', '.svn'};\nall = path;\n[entries] = regexp(all, '([^:]+):', 'tokens');\nfor i = 1:length(entries)\n    entry = char(entries{i});\n    for j=1:length(pattern),\n         if (~isempty(strfind(entry, pattern{j})))\n             rmpath(entry);\n         end;\n    end\nend;\nclear all pattern entry entries;\n\n\nsavepath(cself)\nclear self cself snewer\n%else %~isdeployed\n%    fprintf('I am deployed')\n\n%set default figure settings \nset(0, 'defaultTextFontSize', 16)\nset(0, 'defaultAxisFontSize', 16)\nset(0, 'defaultLineLineWidth', 2)\n\nend \n","returncode":0,"stderr":"","license":"apache-2.0","lang":"Matlab"}
{"commit":"711517fd24d053a5235c314b2959245237c42eed","subject":"reminded save","message":"reminded save\n","repos":"dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim","old_file":"fmri.matlab","new_file":"fmri.matlab","new_contents":"%------------ FreeSurfer -----------------------------%\nfshome = getenv('FREESURFER_HOME');\nfsmatlab = sprintf('%s\/matlab',fshome);\nif (exist(fsmatlab) == 7)\n    path(path,fsmatlab);\nend\nclear fshome fsmatlab;\n%-----------------------------------------------------%\n\n%------------ FreeSurfer FAST ------------------------%\nfsfasthome = getenv('FSFAST_HOME');\nfsfasttoolbox = sprintf('%s\/toolbox',fsfasthome);\nif (exist(fsfasttoolbox) == 7)\n    path(path,fsfasttoolbox);\nend\nclear fsfasthome fsfasttoolbox;\n%-----------------------------------------------------%\n\nhome = getenv('HOME');\naddpath(genpath(sprintf('%s\/fmri\/afni.matlab\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/bct.20121204\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/nbs1.2\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/gretna\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/spm8\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/surfstat\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/panda\/PANDA\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/matlab\/gift\/GroupICATv3.0a\/icatb',home)));\naddpath(genpath(sprintf('%s\/fmri\/matlab\/rest\/REST\/',home)));\nclear home;\n\n%function filter_path(pattern)\npattern='.git';\nall = path;\n[entries] = regexp(all, '([^:]+):', 'tokens');\nfor i = 1:length(entries)\n     entry = char(entries{i});\n     if (~isempty(strfind(entry, pattern)))\n         rmpath(entry);\n     end;\nend;\nclear all pattern entry entries;\n\n","old_contents":"%------------ FreeSurfer -----------------------------%\nfshome = getenv('FREESURFER_HOME');\nfsmatlab = sprintf('%s\/matlab',fshome);\nif (exist(fsmatlab) == 7)\n    path(path,fsmatlab);\nend\nclear fshome fsmatlab;\n%-----------------------------------------------------%\n\n%------------ FreeSurfer FAST ------------------------%\nfsfasthome = getenv('FSFAST_HOME');\nfsfasttoolbox = sprintf('%s\/toolbox',fsfasthome);\nif (exist(fsfasttoolbox) == 7)\n    path(path,fsfasttoolbox);\nend\nclear fsfasthome fsfasttoolbox;\n%-----------------------------------------------------%\n\nhome = getenv('HOME');\naddpath(genpath(sprintf('%s\/fmri\/afni.matlab\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/bct.20121204\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/nbs1.2\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/gretna\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/spm8\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/surfstat\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/panda\/PANDA\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/matlab\/gift\/GroupICATv3.0a\/icatb',home)));\naddpath(genpath(sprintf('%s\/fmri\/matlab\/rest\/REST\/',home)));\nclear home;\n\n%function filter_path(pattern)\npattern='.git';\nall = path;\n[entries] = regexp(all, '([^:]+):', 'tokens');\nfor i = 1:length(entries)\n     entry = char(entries{i});\n     if (~isempty(strfind(entry, pattern)))\n         rmpath(entry);\n     end;\nend;\n\n","returncode":0,"stderr":"","license":"apache-2.0","lang":"Matlab"}
{"commit":"bc10db5ba1d2e575cdaf2495c9d9b0fda83c57f3","subject":"set my default figure font size and line width","message":"set my default figure font size and line width\n","repos":"dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim","old_file":"fmri.matlab","new_file":"fmri.matlab","new_contents":"if ~isdeployed,\n\nself=mfilename;\nmatlabver = version('-release');\ncself=[mfilename('fullpath'),'_', matlabver , '_cache.m'];\n[~, snewer]=system(['test ', cself, ' -nt ', self ' && echo 1 || echo 0']);\nif 1==str2num(snewer), %if cache is newer than me\n    fprintf(2, 'Loading cached startup path: %s\\n', cself);\n    %load cache\n    pd=pwd;  [pathn, scriptn]=fileparts(cself);\n    cd(pathn); \n    eval(sprintf('npath=%s;', scriptn)); path(npath);\n    addpath(pathn);  \n    cd(pd);\n    clear self snewer cself pd pathn scriptn npath\n    return\nend %if cself does not exist, it is Ok, system will think it fails to be newer!\n\n%------------ FreeSurfer -----------------------------%\nfshome = getenv('FREESURFER_HOME');\nfsmatlab = sprintf('%s\/matlab',fshome);\nif (exist(fsmatlab) == 7)\n    path(path,fsmatlab);\nend\nclear fshome fsmatlab;\n%-----------------------------------------------------%\n\n%------------ FreeSurfer FAST ------------------------%\nfsfasthome = getenv('FSFAST_HOME');\nfsfasttoolbox = sprintf('%s\/toolbox',fsfasthome);\nif (exist(fsfasttoolbox) == 7)\n    path(path,fsfasttoolbox);\nend\nclear fsfasthome fsfasttoolbox;\n%-----------------------------------------------------%\n\nuser=getenv('USER'),\nnode=getenv('HOSTNAME'),\n%if strcmp(user, 'xst833'),\nif ismember(user, {'xst833', 'tbp688', 'dawnsong', 'songx4'})\n    home = getenv('HOME'),\nelse\n    home = '\/home\/xst833\/';\nend\n\nfmriTools={\n'fmri\/afni.matlab';\n'fmri\/bct.20121204';\n'fmri\/nbs1.2';\n'fmri\/gretna';\n% 'spm12';\n% 'spm12\/toolbox\/cat12';\n'fmri\/spm8';\n'fmri\/spm8\/toolbox\/vbm8';\n'fmri\/surfstat';\n'fmri\/panda\/PANDA';\n'matlab\/gift\/GroupICATv4.0a\/icatb';\n'matlab\/rest\/REST';\n'matlab\/mlsp';\n'matlab\/m2thml';\n'matlab\/BrainNetViewer';\n'matlab\/eig3';\n'matlab\/export_fig';\n'matlab\/ite\/code';\n'matlab\/jsonlab';\n%'matlab\/MIToolbox';\n};\nfor i=1:size(fmriTools, 1),\n    dir=sprintf(['%s\/' fmriTools{i}], home);\n    if exist(dir, 'dir'),\n        addpath(genpath(dir));\n        fprintf(2, sprintf('# Added path: %s\\n', dir));\n    else\n        fprintf(2, sprintf('## Cannot find dir: %s\\n', dir));\n    end\nend\n\n%add my bin path\ndawnbind= getenv('DAWNBIND');\naddpath(genpath(dawnbind));\nclear home fmriTools;\n\nfprintf(2, sprintf('#Cleaning .git .svn dirs\\n'));\n%function filter_path(pattern)\npattern={'.git', '.svn'};\nall = path;\n[entries] = regexp(all, '([^:]+):', 'tokens');\nfor i = 1:length(entries)\n    entry = char(entries{i});\n    for j=1:length(pattern),\n         if (~isempty(strfind(entry, pattern{j})))\n             rmpath(entry);\n         end;\n    end\nend;\nclear all pattern entry entries;\n\n\nsavepath(cself)\nclear self cself snewer\n%else %~isdeployed\n%    fprintf('I am deployed')\n\n%set default figure settings \nset(0, 'defaultTextFontSize', 16)\nset(0, 'defaultAxisFontSize', 16)\nset(0, 'defaultLineLineWidth', 2)\n\nend \n","old_contents":"if ~isdeployed,\n\nself=mfilename;\nmatlabver = version('-release');\ncself=[mfilename('fullpath'),'_', matlabver , '_cache.m'];\n[~, snewer]=system(['test ', cself, ' -nt ', self ' && echo 1 || echo 0']);\nif 1==str2num(snewer), %if cache is newer than me\n    fprintf(2, 'Loading cached startup path: %s\\n', cself);\n    %load cache\n    pd=pwd;  [pathn, scriptn]=fileparts(cself);\n    cd(pathn); \n    eval(sprintf('npath=%s;', scriptn)); path(npath);\n    addpath(pathn);  \n    cd(pd);\n    clear self snewer cself pd pathn scriptn npath\n    return\nend %if cself does not exist, it is Ok, system will think it fails to be newer!\n\n%------------ FreeSurfer -----------------------------%\nfshome = getenv('FREESURFER_HOME');\nfsmatlab = sprintf('%s\/matlab',fshome);\nif (exist(fsmatlab) == 7)\n    path(path,fsmatlab);\nend\nclear fshome fsmatlab;\n%-----------------------------------------------------%\n\n%------------ FreeSurfer FAST ------------------------%\nfsfasthome = getenv('FSFAST_HOME');\nfsfasttoolbox = sprintf('%s\/toolbox',fsfasthome);\nif (exist(fsfasttoolbox) == 7)\n    path(path,fsfasttoolbox);\nend\nclear fsfasthome fsfasttoolbox;\n%-----------------------------------------------------%\n\nuser=getenv('USER'),\nnode=getenv('HOSTNAME'),\n%if strcmp(user, 'xst833'),\nif ismember(user, {'xst833', 'tbp688', 'dawnsong', 'songx4'})\n    home = getenv('HOME'),\nelse\n    home = '\/home\/xst833\/';\nend\n\nfmriTools={\n'fmri\/afni.matlab';\n'fmri\/bct.20121204';\n'fmri\/nbs1.2';\n'fmri\/gretna';\n% 'spm12';\n% 'spm12\/toolbox\/cat12';\n'fmri\/spm8';\n'fmri\/spm8\/toolbox\/vbm8';\n'fmri\/surfstat';\n'fmri\/panda\/PANDA';\n'matlab\/gift\/GroupICATv4.0a\/icatb';\n'matlab\/rest\/REST';\n'matlab\/mlsp';\n'matlab\/m2thml';\n'matlab\/BrainNetViewer';\n'matlab\/eig3';\n'matlab\/export_fig';\n'matlab\/ite\/code';\n'matlab\/jsonlab';\n%'matlab\/MIToolbox';\n};\nfor i=1:size(fmriTools, 1),\n    dir=sprintf(['%s\/' fmriTools{i}], home);\n    if exist(dir, 'dir'),\n        addpath(genpath(dir));\n        fprintf(2, sprintf('# Added path: %s\\n', dir));\n    else\n        fprintf(2, sprintf('## Cannot find dir: %s\\n', dir));\n    end\nend\n\n%add my bin path\ndawnbind= getenv('DAWNBIND');\naddpath(genpath(dawnbind));\nclear home fmriTools;\n\nfprintf(2, sprintf('#Cleaning .git .svn dirs\\n'));\n%function filter_path(pattern)\npattern={'.git', '.svn'};\nall = path;\n[entries] = regexp(all, '([^:]+):', 'tokens');\nfor i = 1:length(entries)\n    entry = char(entries{i});\n    for j=1:length(pattern),\n         if (~isempty(strfind(entry, pattern{j})))\n             rmpath(entry);\n         end;\n    end\nend;\nclear all pattern entry entries;\n\n\nsavepath(cself)\nclear self cself snewer\n%else %~isdeployed\n%    fprintf('I am deployed')\nend \n","returncode":0,"stderr":"","license":"apache-2.0","lang":"Matlab"}
{"commit":"d73f3644a6ad72d927e380942dacc72411221fca","subject":"make sure nnr747 can find my  home's matlab config","message":"make sure nnr747 can find my  home's matlab config\n","repos":"dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim","old_file":"fmri.matlab","new_file":"fmri.matlab","new_contents":"if ~isdeployed,\n\nself=mfilename;\ncself=[mfilename('fullpath'), '_cache.m'];\n[~, snewer]=system(['test ', cself, ' -nt ', self ' && echo 1 || echo 0']);\nif 1==str2num(snewer), %if cache is newer than me\n    fprintf(2, 'Loading cached startup path: %s\\n', cself);\n    %load cache\n    pd=pwd;  path=fileparts(cself);\n    cd(path); path=startup_cache; addpath(path);  cd(pd);\n    clear self snewer cself pd path\n    return\nend %if cself does not exist, it is Ok, system will think it fails to be newer!\n\n%------------ FreeSurfer -----------------------------%\nfshome = getenv('FREESURFER_HOME');\nfsmatlab = sprintf('%s\/matlab',fshome);\nif (exist(fsmatlab) == 7)\n    path(path,fsmatlab);\nend\nclear fshome fsmatlab;\n%-----------------------------------------------------%\n\n%------------ FreeSurfer FAST ------------------------%\nfsfasthome = getenv('FSFAST_HOME');\nfsfasttoolbox = sprintf('%s\/toolbox',fsfasthome);\nif (exist(fsfasttoolbox) == 7)\n    path(path,fsfasttoolbox);\nend\nclear fsfasthome fsfasttoolbox;\n%-----------------------------------------------------%\n\nuser=getenv('USER'),\nnode=getenv('HOSTNAME'),\n%if strcmp(user, 'xst833'),\nif ismember(user, {'xst833', 'tbp688'})\n    home = getenv('HOME'),\nelse\n    home = '\/home\/xst833\/';\nend\n\nfmriTools={\n'fmri\/afni.matlab';\n'fmri\/bct.20121204';\n'fmri\/nbs1.2';\n'fmri\/gretna';\n% 'spm12';\n% 'spm12\/toolbox\/cat12';\n'fmri\/spm8';\n'fmri\/spm8\/toolbox\/vbm8';\n'fmri\/surfstat';\n'fmri\/panda\/PANDA';\n'matlab\/gift\/GroupICATv4.0a\/icatb';\n'matlab\/rest\/REST';\n'matlab\/mlsp';\n'matlab\/m2thml';\n'matlab\/BrainNetViewer';\n'matlab\/eig3';\n'matlab\/export_fig';\n'matlab\/ite\/code';\n'matlab\/jsonlab';\n%'matlab\/MIToolbox';\n};\nfor i=1:size(fmriTools, 1),\n    dir=sprintf(['%s\/' fmriTools{i}], home);\n    if exist(dir, 'dir'),\n        addpath(genpath(dir));\n        fprintf(2, sprintf('# Added path: %s\\n', dir));\n    else\n        fprintf(2, sprintf('## Cannot find dir: %s\\n', dir));\n    end\nend\n\n%add my bin path\ndawnbind= getenv('DAWNBIND');\naddpath(genpath(dawnbind));\nclear home fmriTools;\n\nfprintf(2, sprintf('#Cleaning .git .svn dirs\\n'));\n%function filter_path(pattern)\npattern={'.git', '.svn'};\nall = path;\n[entries] = regexp(all, '([^:]+):', 'tokens');\nfor i = 1:length(entries)\n    entry = char(entries{i});\n    for j=1:length(pattern),\n         if (~isempty(strfind(entry, pattern{j})))\n             rmpath(entry);\n         end;\n    end\nend;\nclear all pattern entry entries;\n\n\nsavepath(cself)\nclear self cself snewer\nend %~isdeployed\n","old_contents":"if ~isdeployed,\n\nself=mfilename;\ncself=[mfilename('fullpath'), '_cache.m'];\n[~, snewer]=system(['test ', cself, ' -nt ', self ' && echo 1 || echo 0']);\nif 1==str2num(snewer), %if cache is newer than me\n    fprintf(2, 'Loading cached startup path: %s\\n', cself);\n    %load cache\n    pd=pwd;  path=fileparts(cself);\n    cd(path); path=startup_cache; addpath(path);  cd(pd);\n    clear self snewer cself pd path\n    return\nend %if cself does not exist, it is Ok, system will think it fails to be newer!\n\n%------------ FreeSurfer -----------------------------%\nfshome = getenv('FREESURFER_HOME');\nfsmatlab = sprintf('%s\/matlab',fshome);\nif (exist(fsmatlab) == 7)\n    path(path,fsmatlab);\nend\nclear fshome fsmatlab;\n%-----------------------------------------------------%\n\n%------------ FreeSurfer FAST ------------------------%\nfsfasthome = getenv('FSFAST_HOME');\nfsfasttoolbox = sprintf('%s\/toolbox',fsfasthome);\nif (exist(fsfasttoolbox) == 7)\n    path(path,fsfasttoolbox);\nend\nclear fsfasthome fsfasttoolbox;\n%-----------------------------------------------------%\n\nuser=getenv('USER'),\nnode=getenv('HOSTNAME'),\n%if strcmp(user, 'xst833'),\n    home = getenv('HOME');\n%else\n%    home = '\/home\/xst833\/';\n%end\n\nfmriTools={\n'fmri\/afni.matlab';\n'fmri\/bct.20121204';\n'fmri\/nbs1.2';\n'fmri\/gretna';\n% 'spm12';\n% 'spm12\/toolbox\/cat12';\n'fmri\/spm8';\n'fmri\/spm8\/toolbox\/vbm8';\n'fmri\/surfstat';\n'fmri\/panda\/PANDA';\n'matlab\/gift\/GroupICATv4.0a\/icatb';\n'matlab\/rest\/REST';\n'matlab\/mlsp';\n'matlab\/m2thml';\n'matlab\/BrainNetViewer';\n'matlab\/eig3';\n'matlab\/export_fig';\n'matlab\/ite\/code';\n'matlab\/jsonlab';\n%'matlab\/MIToolbox';\n};\nfor i=1:size(fmriTools, 1),\n    dir=sprintf(['%s\/' fmriTools{i}], home);\n    if exist(dir, 'dir'),\n        addpath(genpath(dir));\n        fprintf(2, sprintf('# Added path: %s\\n', dir));\n    else\n        fprintf(2, sprintf('## Cannot find dir: %s\\n', dir));\n    end\nend\n\n%add my bin path\ndawnbind= getenv('DAWNBIND');\naddpath(genpath(dawnbind));\nclear home fmriTools;\n\nfprintf(2, sprintf('#Cleaning .git .svn dirs\\n'));\n%function filter_path(pattern)\npattern={'.git', '.svn'};\nall = path;\n[entries] = regexp(all, '([^:]+):', 'tokens');\nfor i = 1:length(entries)\n    entry = char(entries{i});\n    for j=1:length(pattern),\n         if (~isempty(strfind(entry, pattern{j})))\n             rmpath(entry);\n         end;\n    end\nend;\nclear all pattern entry entries;\n\n\nsavepath(cself)\nclear self cself snewer\nend %~isdeployed\n","returncode":0,"stderr":"","license":"apache-2.0","lang":"Matlab"}
{"commit":"4e39123d14d7569ccea79bd8f93e8843875911f6","subject":"Update public\/libs\/bower_components\/ace-builds\/demo\/kitchen-sink\/docs\/matlab.matlab","message":"Update public\/libs\/bower_components\/ace-builds\/demo\/kitchen-sink\/docs\/matlab.matlab\n\nSigned-off-by: Bernard Ojengwa <fccb4cc00c1ba7e51bf5c2b5f77130b9fe8d917e@gmail.com>\n","repos":"apipanda\/openssl,apipanda\/openssl,apipanda\/openssl,apipanda\/openssl","old_file":"public\/libs\/bower_components\/ace-builds\/demo\/kitchen-sink\/docs\/matlab.matlab","new_file":"public\/libs\/bower_components\/ace-builds\/demo\/kitchen-sink\/docs\/matlab.matlab","new_contents":"","old_contents":"%{\n   %{\n      Ace Matlab demo\n   %}\n%}\n\nclassdef hello\n   methods\n      function greet(this)\n         disp('Hello!')  % say hi\n      end\n   end\nend\n\n% transpose \na = [ 'x''y', \"x\\n\\\n      y\", 1' ]' + 2'","returncode":0,"stderr":"","license":"mit","lang":"Matlab"}
{"commit":"e2a5b4477a419a1021a05067cb015c3a7ab4faec","subject":"add new lines to match github repo","message":"add new lines to match github repo\n\ngit-svn-id: 0dfcd2cbfde11cd338b51061f2a1a040b934da89@483 786e58fb-9377-0410-9ff7-e4ac0ac0635c\n","repos":"fangq\/jsonlab,fangq\/jsonlab","old_file":"examples\/jsonlab_basictest.matlab","new_file":"examples\/jsonlab_basictest.matlab","new_contents":"\n                              < M A T L A B >\n                  Copyright 1984-2007 The MathWorks, Inc.\n                         Version 7.4.0.287 (R2007a)\n                              January 29, 2007\n\n \n  To get started, type one of these: helpwin, helpdesk, or demo.\n  For product information, visit www.mathworks.com.\n \n>> >> >> >> >> >> >> >> >> \n%=================================================\n>> %  a simple scalar value \n>> %=================================================\n\n>> >> \ndata2json =\n\n    3.1416\n\n>> \nans =\n\n[3.141592654]\n\n\n>> \njson2data =\n\n    3.1416\n\n>> >> \n%=================================================\n>> %  a complex number\n>> %=================================================\n\n>> >> >> \ndata2json =\n\n   1.0000 + 2.0000i\n\n>> \nans =\n\n{\n\t\"_ArrayType_\": \"double\",\n\t\"_ArraySize_\": [1,1],\n\t\"_ArrayIsComplex_\": 1,\n\t\"_ArrayData_\": [1,2]\n}\n\n\n>> \njson2data =\n\n   1.0000 + 2.0000i\n\n>> >> \n%=================================================\n>> %  a complex matrix\n>> %=================================================\n\n>> >> >> \ndata2json =\n\n  35.0000 +26.0000i   1.0000 +19.0000i   6.0000 +24.0000i\n   3.0000 +21.0000i  32.0000 +23.0000i   7.0000 +25.0000i\n  31.0000 +22.0000i   9.0000 +27.0000i   2.0000 +20.0000i\n   8.0000 +17.0000i  28.0000 +10.0000i  33.0000 +15.0000i\n  30.0000 +12.0000i   5.0000 +14.0000i  34.0000 +16.0000i\n   4.0000 +13.0000i  36.0000 +18.0000i  29.0000 +11.0000i\n\n>> \nans =\n\n{\n\t\"_ArrayType_\": \"double\",\n\t\"_ArraySize_\": [6,3],\n\t\"_ArrayIsComplex_\": 1,\n\t\"_ArrayData_\": [\n\t\t[35,26],\n\t\t[3,21],\n\t\t[31,22],\n\t\t[8,17],\n\t\t[30,12],\n\t\t[4,13],\n\t\t[1,19],\n\t\t[32,23],\n\t\t[9,27],\n\t\t[28,10],\n\t\t[5,14],\n\t\t[36,18],\n\t\t[6,24],\n\t\t[7,25],\n\t\t[2,20],\n\t\t[33,15],\n\t\t[34,16],\n\t\t[29,11]\n\t]\n}\n\n\n>> \njson2data =\n\n  35.0000 +26.0000i   1.0000 +19.0000i   6.0000 +24.0000i\n   3.0000 +21.0000i  32.0000 +23.0000i   7.0000 +25.0000i\n  31.0000 +22.0000i   9.0000 +27.0000i   2.0000 +20.0000i\n   8.0000 +17.0000i  28.0000 +10.0000i  33.0000 +15.0000i\n  30.0000 +12.0000i   5.0000 +14.0000i  34.0000 +16.0000i\n   4.0000 +13.0000i  36.0000 +18.0000i  29.0000 +11.0000i\n\n>> >> \n%=================================================\n>> %  MATLAB special constants\n>> %=================================================\n\n>> >> \ndata2json =\n\n   NaN   Inf  -Inf\n\n>> \nans =\n\n{\n\t\"specials\": [\"_NaN_\",\"_Inf_\",\"-_Inf_\"]\n}\n\n\n>> \njson2data = \n\n    specials: [NaN Inf -Inf]\n\n>> >> \n%=================================================\n>> %  a real sparse matrix\n>> %=================================================\n\n>> >> \ndata2json =\n\n   (1,2)       0.6557\n   (9,2)       0.7577\n   (3,5)       0.8491\n  (10,5)       0.7431\n  (10,8)       0.3922\n   (7,9)       0.6787\n   (2,10)      0.0357\n   (6,10)      0.9340\n  (10,10)      0.6555\n\n>> \nans =\n\n{\n\t\"sparse\": {\n\t\t\"_ArrayType_\": \"double\",\n\t\t\"_ArraySize_\": [10,10],\n\t\t\"_ArrayIsSparse_\": 1,\n\t\t\"_ArrayData_\": [\n\t\t\t[1,2,0.6557406992],\n\t\t\t[9,2,0.7577401306],\n\t\t\t[3,5,0.8491293059],\n\t\t\t[10,5,0.7431324681],\n\t\t\t[10,8,0.3922270195],\n\t\t\t[7,9,0.6787351549],\n\t\t\t[2,10,0.03571167857],\n\t\t\t[6,10,0.9339932478],\n\t\t\t[10,10,0.6554778902]\n\t\t]\n\t}\n}\n\n\n>> \njson2data = \n\n    sparse: [10x10 double]\n\n>> >> \n%=================================================\n>> %  a complex sparse matrix\n>> %=================================================\n\n>> >> \ndata2json =\n\n   (1,2)      0.6557 - 0.6557i\n   (9,2)      0.7577 - 0.7577i\n   (3,5)      0.8491 - 0.8491i\n  (10,5)      0.7431 - 0.7431i\n  (10,8)      0.3922 - 0.3922i\n   (7,9)      0.6787 - 0.6787i\n   (2,10)     0.0357 - 0.0357i\n   (6,10)     0.9340 - 0.9340i\n  (10,10)     0.6555 - 0.6555i\n\n>> \nans =\n\n{\n\t\"complex_sparse\": {\n\t\t\"_ArrayType_\": \"double\",\n\t\t\"_ArraySize_\": [10,10],\n\t\t\"_ArrayIsComplex_\": 1,\n\t\t\"_ArrayIsSparse_\": 1,\n\t\t\"_ArrayData_\": [\n\t\t\t[1,2,0.6557406992,-0.6557406992],\n\t\t\t[9,2,0.7577401306,-0.7577401306],\n\t\t\t[3,5,0.8491293059,-0.8491293059],\n\t\t\t[10,5,0.7431324681,-0.7431324681],\n\t\t\t[10,8,0.3922270195,-0.3922270195],\n\t\t\t[7,9,0.6787351549,-0.6787351549],\n\t\t\t[2,10,0.03571167857,-0.03571167857],\n\t\t\t[6,10,0.9339932478,-0.9339932478],\n\t\t\t[10,10,0.6554778902,-0.6554778902]\n\t\t]\n\t}\n}\n\n\n>> \njson2data = \n\n    complex_sparse: [10x10 double]\n\n>> >> \n%=================================================\n>> %  an all-zero sparse matrix\n>> %=================================================\n\n>> >> >> \nans =\n\n{\n\t\"all_zero_sparse\": {\n\t\t\"_ArrayType_\": \"double\",\n\t\t\"_ArraySize_\": [2,3],\n\t\t\"_ArrayIsSparse_\": 1,\n\t\t\"_ArrayData_\": null\n\t}\n}\n\n\n>> \njson2data = \n\n    all_zero_sparse: [2x3 double]\n\n>> >> \n%=================================================\n>> %  an empty sparse matrix\n>> %=================================================\n\n>> >> >> \nans =\n\n{\n\t\"empty_sparse\": {\n\t\t\"_ArrayType_\": \"double\",\n\t\t\"_ArraySize_\": [0,0],\n\t\t\"_ArrayIsSparse_\": 1,\n\t\t\"_ArrayData_\": null\n\t}\n}\n\n\n>> \njson2data = \n\n    empty_sparse: []\n\n>> >> \n%=================================================\n>> %  an empty 0-by-0 real matrix\n>> %=================================================\n\n>> >> >> \nans =\n\n{\n\t\"empty_0by0_real\": null\n}\n\n\n>> \njson2data = \n\n    empty_0by0_real: []\n\n>> >> \n%=================================================\n>> %  an empty 0-by-3 real matrix\n>> %=================================================\n\n>> >> >> \nans =\n\n{\n\t\"empty_0by3_real\": {\n\t\t\"_ArrayType_\": \"double\",\n\t\t\"_ArraySize_\": [0,3],\n\t\t\"_ArrayData_\": null\n\t}\n}\n\n\n>> \njson2data = \n\n    empty_0by3_real: [0x3 double]\n\n>> >> \n%=================================================\n>> %  a sparse real column vector\n>> %=================================================\n\n>> >> >> \nans =\n\n{\n\t\"sparse_column_vector\": {\n\t\t\"_ArrayType_\": \"double\",\n\t\t\"_ArraySize_\": [5,1],\n\t\t\"_ArrayIsSparse_\": 1,\n\t\t\"_ArrayData_\": [\n\t\t\t[2,3],\n\t\t\t[4,1],\n\t\t\t[5,4]\n\t\t]\n\t}\n}\n\n\n>> \njson2data = \n\n    sparse_column_vector: [5x1 double]\n\n>> >> \n%=================================================\n>> %  a sparse complex column vector\n>> %=================================================\n\n>> >> >> \nans =\n\n{\n\t\"complex_sparse_column_vector\": {\n\t\t\"_ArrayType_\": \"double\",\n\t\t\"_ArraySize_\": [5,1],\n\t\t\"_ArrayIsComplex_\": 1,\n\t\t\"_ArrayIsSparse_\": 1,\n\t\t\"_ArrayData_\": [\n\t\t\t[2,3,-3],\n\t\t\t[4,1,-1],\n\t\t\t[5,4,-4]\n\t\t]\n\t}\n}\n\n\n>> \njson2data = \n\n    complex_sparse_column_vector: [5x1 double]\n\n>> >> \n%=================================================\n>> %  a sparse real row vector\n>> %=================================================\n\n>> >> >> \nans =\n\n{\n\t\"sparse_row_vector\": {\n\t\t\"_ArrayType_\": \"double\",\n\t\t\"_ArraySize_\": [1,5],\n\t\t\"_ArrayIsSparse_\": 1,\n\t\t\"_ArrayData_\": [\n\t\t\t[2,3],\n\t\t\t[4,1],\n\t\t\t[5,4]\n\t\t]\n\t}\n}\n\n\n>> \njson2data = \n\n    sparse_row_vector: [0 3 0 1 4]\n\n>> >> \n%=================================================\n>> %  a sparse complex row vector\n>> %=================================================\n\n>> >> >> \nans =\n\n{\n\t\"complex_sparse_row_vector\": {\n\t\t\"_ArrayType_\": \"double\",\n\t\t\"_ArraySize_\": [1,5],\n\t\t\"_ArrayIsComplex_\": 1,\n\t\t\"_ArrayIsSparse_\": 1,\n\t\t\"_ArrayData_\": [\n\t\t\t[2,3,-3],\n\t\t\t[4,1,-1],\n\t\t\t[5,4,-4]\n\t\t]\n\t}\n}\n\n\n>> \njson2data = \n\n    complex_sparse_row_vector: [1x5 double]\n\n>> >> \n%=================================================\n>> %  a structure\n>> %=================================================\n\n>> >> \ndata2json = \n\n        name: 'Think Different'\n        year: 1997\n       magic: [3x3 double]\n     misfits: [Inf NaN]\n    embedded: [1x1 struct]\n\n>> \nans =\n\n{\n\t\"astruct\": {\n\t\t\"name\": \"Think Different\",\n\t\t\"year\": 1997,\n\t\t\"magic\": [\n\t\t\t[8,1,6],\n\t\t\t[3,5,7],\n\t\t\t[4,9,2]\n\t\t],\n\t\t\"misfits\": [\"_Inf_\",\"_NaN_\"],\n\t\t\"embedded\": {\n\t\t\t\"left\": true,\n\t\t\t\"right\": false\n\t\t}\n\t}\n}\n\n\n>> \njson2data = \n\n    astruct: [1x1 struct]\n\n>> >> \n%=================================================\n>> %  a structure array\n>> %=================================================\n\n>> >> >> >> >> \nans =\n\n{\n\t\"Supreme Commander\": [\n\t\t{\n\t\t\t\"name\": \"Nexus Prime\",\n\t\t\t\"rank\": 9\n\t\t},\n\t\t{\n\t\t\t\"name\": \"Sentinel Prime\",\n\t\t\t\"rank\": 9\n\t\t},\n\t\t{\n\t\t\t\"name\": \"Optimus Prime\",\n\t\t\t\"rank\": 9\n\t\t}\n\t]\n}\n\n\n>> \njson2data = \n\n    Supreme_0x20_Commander: {[1x1 struct]  [1x1 struct]  [1x1 struct]}\n\n>> >> \n%=================================================\n>> %  a cell array\n>> %=================================================\n\n>> >> >> >> >> \ndata2json = \n\n    [1x1 struct]\n    [1x1 struct]\n    [1x4 double]\n\n>> \nans =\n\n{\n\t\"debian\": [\n\t\t[\n\t\t\t{\n\t\t\t\t\"buzz\": 1.10,\n\t\t\t\t\"rex\": 1.20,\n\t\t\t\t\"bo\": 1.30,\n\t\t\t\t\"hamm\": 2.00,\n\t\t\t\t\"slink\": 2.10,\n\t\t\t\t\"potato\": 2.20,\n\t\t\t\t\"woody\": 3.00,\n\t\t\t\t\"sarge\": 3.10,\n\t\t\t\t\"etch\": 4.00,\n\t\t\t\t\"lenny\": 5.00,\n\t\t\t\t\"squeeze\": 6.00,\n\t\t\t\t\"wheezy\": 7.00\n\t\t\t},\n\t\t\t{\n\t\t\t\t\"Ubuntu\": [\n\t\t\t\t\t\"Kubuntu\",\n\t\t\t\t\t\"Xubuntu\",\n\t\t\t\t\t\"Lubuntu\"\n\t\t\t\t]\n\t\t\t},\n\t\t\t[10.04,10.10,11.04,11.10]\n\t\t]\n\t]\n}\n\n\n>> \njson2data = \n\n    debian: {{1x3 cell}}\n\n>> >> \n%=================================================\n>> %  invalid field-name handling\n>> %=================================================\n\n>> >> \njson2data = \n\n               ValidName: 1\n       x0x5F_InvalidName: 2\n       x0x3A_Field_0x3A_: 3\n    x0xE9A1B9__0xE79BAE_: '\u7edd\u5bc6'\n\n>> >> \n%=================================================\n>> %  a 2D cell array\n>> %=================================================\n\n>> >> >> \nans =\n\n{\n\t\"data2json\": [\n\t\t[\n\t\t\t[\n\t\t\t\t1,\n\t\t\t\t[\n\t\t\t\t\t2,\n\t\t\t\t\t3\n\t\t\t\t]\n\t\t\t],\n\t\t\t7\n\t\t],\n\t\t[\n\t\t\t[\n\t\t\t\t4,\n\t\t\t\t5\n\t\t\t],\n\t\t\t[\n\t\t\t\t8,\n\t\t\t\t9\n\t\t\t]\n\t\t],\n\t\t[\n\t\t\t6,\n\t\t\t10\n\t\t]\n\t]\n}\n\n\n>> \njson2data = \n\n    data2json: {{1x2 cell}  [2x2 double]  [6 10]}\n\n>> >> \n%=================================================\n>> %  a 2D struct array\n>> %=================================================\n\n>> >> \ndata2json = \n\n2x3 struct array with fields:\n    idx\n    data\n\n>> >> \nans =\n\n{\n\t\"data2json\": [\n\t\t[\n\t\t\t{\n\t\t\t\t\"idx\": 1,\n\t\t\t\t\"data\": \"structs\"\n\t\t\t},\n\t\t\t{\n\t\t\t\t\"idx\": 2,\n\t\t\t\t\"data\": \"structs\"\n\t\t\t}\n\t\t],\n\t\t[\n\t\t\t{\n\t\t\t\t\"idx\": 3,\n\t\t\t\t\"data\": \"structs\"\n\t\t\t},\n\t\t\t{\n\t\t\t\t\"idx\": 4,\n\t\t\t\t\"data\": \"structs\"\n\t\t\t}\n\t\t],\n\t\t[\n\t\t\t{\n\t\t\t\t\"idx\": 5,\n\t\t\t\t\"data\": \"structs\"\n\t\t\t},\n\t\t\t{\n\t\t\t\t\"idx\": 6,\n\t\t\t\t\"data\": \"structs\"\n\t\t\t}\n\t\t]\n\t]\n}\n\n\n>> \njson2data = \n\n    data2json: {{1x2 cell}  {1x2 cell}  {1x2 cell}}\n\n>> >> >> >> \n","old_contents":"\n                              < M A T L A B >\n                  Copyright 1984-2007 The MathWorks, Inc.\n                         Version 7.4.0.287 (R2007a)\n                              January 29, 2007\n\n \n  To get started, type one of these: helpwin, helpdesk, or demo.\n  For product information, visit www.mathworks.com.\n \n>> >> >> >> >> >> >> >> >> \n%=================================================\n>> %  a simple scalar value \n>> %=================================================\n\n>> >> \ndata2json =\n\n    3.1416\n\n>> \nans =\n\n[3.141592654]\n\n\n>> \njson2data =\n\n    3.1416\n\n>> >> \n%=================================================\n>> %  a complex number\n>> %=================================================\n\n>> >> >> \ndata2json =\n\n   1.0000 + 2.0000i\n\n>> \nans =\n\n{\n\t\"_ArrayType_\": \"double\",\n\t\"_ArraySize_\": [1,1],\n\t\"_ArrayIsComplex_\": 1,\n\t\"_ArrayData_\": [1,2]\n}\n\n\n>> \njson2data =\n\n   1.0000 + 2.0000i\n\n>> >> \n%=================================================\n>> %  a complex matrix\n>> %=================================================\n\n>> >> >> \ndata2json =\n\n  35.0000 +26.0000i   1.0000 +19.0000i   6.0000 +24.0000i\n   3.0000 +21.0000i  32.0000 +23.0000i   7.0000 +25.0000i\n  31.0000 +22.0000i   9.0000 +27.0000i   2.0000 +20.0000i\n   8.0000 +17.0000i  28.0000 +10.0000i  33.0000 +15.0000i\n  30.0000 +12.0000i   5.0000 +14.0000i  34.0000 +16.0000i\n   4.0000 +13.0000i  36.0000 +18.0000i  29.0000 +11.0000i\n\n>> \nans =\n\n{\n\t\"_ArrayType_\": \"double\",\n\t\"_ArraySize_\": [6,3],\n\t\"_ArrayIsComplex_\": 1,\n\t\"_ArrayData_\": [\n\t\t[35,26],\n\t\t[3,21],\n\t\t[31,22],\n\t\t[8,17],\n\t\t[30,12],\n\t\t[4,13],\n\t\t[1,19],\n\t\t[32,23],\n\t\t[9,27],\n\t\t[28,10],\n\t\t[5,14],\n\t\t[36,18],\n\t\t[6,24],\n\t\t[7,25],\n\t\t[2,20],\n\t\t[33,15],\n\t\t[34,16],\n\t\t[29,11]\n\t]\n}\n\n\n>> \njson2data =\n\n  35.0000 +26.0000i   1.0000 +19.0000i   6.0000 +24.0000i\n   3.0000 +21.0000i  32.0000 +23.0000i   7.0000 +25.0000i\n  31.0000 +22.0000i   9.0000 +27.0000i   2.0000 +20.0000i\n   8.0000 +17.0000i  28.0000 +10.0000i  33.0000 +15.0000i\n  30.0000 +12.0000i   5.0000 +14.0000i  34.0000 +16.0000i\n   4.0000 +13.0000i  36.0000 +18.0000i  29.0000 +11.0000i\n\n>> >> \n%=================================================\n>> %  MATLAB special constants\n>> %=================================================\n\n>> >> \ndata2json =\n\n   NaN   Inf  -Inf\n\n>> \nans =\n\n{\n\t\"specials\": [\"_NaN_\",\"_Inf_\",\"-_Inf_\"]\n}\n\n\n>> \njson2data = \n\n    specials: [NaN Inf -Inf]\n\n>> >> \n%=================================================\n>> %  a real sparse matrix\n>> %=================================================\n\n>> >> \ndata2json =\n\n   (1,2)       0.6557\n   (9,2)       0.7577\n   (3,5)       0.8491\n  (10,5)       0.7431\n  (10,8)       0.3922\n   (7,9)       0.6787\n   (2,10)      0.0357\n   (6,10)      0.9340\n  (10,10)      0.6555\n\n>> \nans =\n\n{\n\t\"sparse\": {\n\t\t\"_ArrayType_\": \"double\",\n\t\t\"_ArraySize_\": [10,10],\n\t\t\"_ArrayIsSparse_\": 1,\n\t\t\"_ArrayData_\": [\n\t\t\t[1,2,0.6557406992],\n\t\t\t[9,2,0.7577401306],\n\t\t\t[3,5,0.8491293059],\n\t\t\t[10,5,0.7431324681],\n\t\t\t[10,8,0.3922270195],\n\t\t\t[7,9,0.6787351549],\n\t\t\t[2,10,0.03571167857],\n\t\t\t[6,10,0.9339932478],\n\t\t\t[10,10,0.6554778902]\n\t\t]\n\t}\n}\n\n\n>> \njson2data = \n\n    sparse: [10x10 double]\n\n>> >> \n%=================================================\n>> %  a complex sparse matrix\n>> %=================================================\n\n>> >> \ndata2json =\n\n   (1,2)      0.6557 - 0.6557i\n   (9,2)      0.7577 - 0.7577i\n   (3,5)      0.8491 - 0.8491i\n  (10,5)      0.7431 - 0.7431i\n  (10,8)      0.3922 - 0.3922i\n   (7,9)      0.6787 - 0.6787i\n   (2,10)     0.0357 - 0.0357i\n   (6,10)     0.9340 - 0.9340i\n  (10,10)     0.6555 - 0.6555i\n\n>> \nans =\n\n{\n\t\"complex_sparse\": {\n\t\t\"_ArrayType_\": \"double\",\n\t\t\"_ArraySize_\": [10,10],\n\t\t\"_ArrayIsComplex_\": 1,\n\t\t\"_ArrayIsSparse_\": 1,\n\t\t\"_ArrayData_\": [\n\t\t\t[1,2,0.6557406992,-0.6557406992],\n\t\t\t[9,2,0.7577401306,-0.7577401306],\n\t\t\t[3,5,0.8491293059,-0.8491293059],\n\t\t\t[10,5,0.7431324681,-0.7431324681],\n\t\t\t[10,8,0.3922270195,-0.3922270195],\n\t\t\t[7,9,0.6787351549,-0.6787351549],\n\t\t\t[2,10,0.03571167857,-0.03571167857],\n\t\t\t[6,10,0.9339932478,-0.9339932478],\n\t\t\t[10,10,0.6554778902,-0.6554778902]\n\t\t]\n\t}\n}\n\n\n>> \njson2data = \n\n    complex_sparse: [10x10 double]\n\n>> >> \n%=================================================\n>> %  an all-zero sparse matrix\n>> %=================================================\n\n>> >> >> \nans =\n\n{\n\t\"all_zero_sparse\": {\n\t\t\"_ArrayType_\": \"double\",\n\t\t\"_ArraySize_\": [2,3],\n\t\t\"_ArrayIsSparse_\": 1,\n\t\t\"_ArrayData_\": null\n\t}\n}\n\n\n>> \njson2data = \n\n    all_zero_sparse: [2x3 double]\n\n>> >> \n%=================================================\n>> %  an empty sparse matrix\n>> %=================================================\n\n>> >> >> \nans =\n\n{\n\t\"empty_sparse\": {\n\t\t\"_ArrayType_\": \"double\",\n\t\t\"_ArraySize_\": [0,0],\n\t\t\"_ArrayIsSparse_\": 1,\n\t\t\"_ArrayData_\": null\n\t}\n}\n\n\n>> \njson2data = \n\n    empty_sparse: []\n\n>> >> \n%=================================================\n>> %  an empty 0-by-0 real matrix\n>> %=================================================\n\n>> >> >> \nans =\n\n{\n\t\"empty_0by0_real\": null\n}\n\n\n>> \njson2data = \n\n    empty_0by0_real: []\n\n>> >> \n%=================================================\n>> %  an empty 0-by-3 real matrix\n>> %=================================================\n\n>> >> >> \nans =\n\n{\n\t\"empty_0by3_real\": {\n\t\t\"_ArrayType_\": \"double\",\n\t\t\"_ArraySize_\": [0,3],\n\t\t\"_ArrayData_\": null\n\t}\n}\n\n\n>> \njson2data = \n\n    empty_0by3_real: [0x3 double]\n\n>> >> \n%=================================================\n>> %  a sparse real column vector\n>> %=================================================\n\n>> >> >> \nans =\n\n{\n\t\"sparse_column_vector\": {\n\t\t\"_ArrayType_\": \"double\",\n\t\t\"_ArraySize_\": [5,1],\n\t\t\"_ArrayIsSparse_\": 1,\n\t\t\"_ArrayData_\": [\n\t\t\t[2,3],\n\t\t\t[4,1],\n\t\t\t[5,4]\n\t\t]\n\t}\n}\n\n\n>> \njson2data = \n\n    sparse_column_vector: [5x1 double]\n\n>> >> \n%=================================================\n>> %  a sparse complex column vector\n>> %=================================================\n\n>> >> >> \nans =\n\n{\n\t\"complex_sparse_column_vector\": {\n\t\t\"_ArrayType_\": \"double\",\n\t\t\"_ArraySize_\": [5,1],\n\t\t\"_ArrayIsComplex_\": 1,\n\t\t\"_ArrayIsSparse_\": 1,\n\t\t\"_ArrayData_\": [\n\t\t\t[2,3,-3],\n\t\t\t[4,1,-1],\n\t\t\t[5,4,-4]\n\t\t]\n\t}\n}\n\n\n>> \njson2data = \n\n    complex_sparse_column_vector: [5x1 double]\n\n>> >> \n%=================================================\n>> %  a sparse real row vector\n>> %=================================================\n\n>> >> >> \nans =\n\n{\n\t\"sparse_row_vector\": {\n\t\t\"_ArrayType_\": \"double\",\n\t\t\"_ArraySize_\": [1,5],\n\t\t\"_ArrayIsSparse_\": 1,\n\t\t\"_ArrayData_\": [\n\t\t\t[2,3],\n\t\t\t[4,1],\n\t\t\t[5,4]\n\t\t]\n\t}\n}\n\n\n>> \njson2data = \n\n    sparse_row_vector: [0 3 0 1 4]\n\n>> >> \n%=================================================\n>> %  a sparse complex row vector\n>> %=================================================\n\n>> >> >> \nans =\n\n{\n\t\"complex_sparse_row_vector\": {\n\t\t\"_ArrayType_\": \"double\",\n\t\t\"_ArraySize_\": [1,5],\n\t\t\"_ArrayIsComplex_\": 1,\n\t\t\"_ArrayIsSparse_\": 1,\n\t\t\"_ArrayData_\": [\n\t\t\t[2,3,-3],\n\t\t\t[4,1,-1],\n\t\t\t[5,4,-4]\n\t\t]\n\t}\n}\n\n\n>> \njson2data = \n\n    complex_sparse_row_vector: [1x5 double]\n\n>> >> \n%=================================================\n>> %  a structure\n>> %=================================================\n\n>> >> \ndata2json = \n\n        name: 'Think Different'\n        year: 1997\n       magic: [3x3 double]\n     misfits: [Inf NaN]\n    embedded: [1x1 struct]\n\n>> \nans =\n\n{\n\t\"astruct\": {\n\t\t\"name\": \"Think Different\",\n\t\t\"year\": 1997,\n\t\t\"magic\": [\n\t\t\t[8,1,6],\n\t\t\t[3,5,7],\n\t\t\t[4,9,2]\n\t\t],\n\t\t\"misfits\": [\"_Inf_\",\"_NaN_\"],\n\t\t\"embedded\": {\n\t\t\t\"left\": true,\n\t\t\t\"right\": false\n\t\t}\n\t}\n}\n\n\n>> \njson2data = \n\n    astruct: [1x1 struct]\n\n>> >> \n%=================================================\n>> %  a structure array\n>> %=================================================\n\n>> >> >> >> >> \nans =\n\n{\n\t\"Supreme Commander\": [\n\t\t{\n\t\t\t\"name\": \"Nexus Prime\",\n\t\t\t\"rank\": 9\n\t\t},\n\t\t{\n\t\t\t\"name\": \"Sentinel Prime\",\n\t\t\t\"rank\": 9\n\t\t},\n\t\t{\n\t\t\t\"name\": \"Optimus Prime\",\n\t\t\t\"rank\": 9\n\t\t}\n\t]\n}\n\n\n>> \njson2data = \n\n    Supreme_0x20_Commander: {[1x1 struct]  [1x1 struct]  [1x1 struct]}\n\n>> >> \n%=================================================\n>> %  a cell array\n>> %=================================================\n\n>> >> >> >> >> \ndata2json = \n\n    [1x1 struct]\n    [1x1 struct]\n    [1x4 double]\n\n>> \nans =\n\n{\n\t\"debian\": [\n\t\t[\n\t\t\t{\n\t\t\t\t\"buzz\": 1.10,\n\t\t\t\t\"rex\": 1.20,\n\t\t\t\t\"bo\": 1.30,\n\t\t\t\t\"hamm\": 2.00,\n\t\t\t\t\"slink\": 2.10,\n\t\t\t\t\"potato\": 2.20,\n\t\t\t\t\"woody\": 3.00,\n\t\t\t\t\"sarge\": 3.10,\n\t\t\t\t\"etch\": 4.00,\n\t\t\t\t\"lenny\": 5.00,\n\t\t\t\t\"squeeze\": 6.00,\n\t\t\t\t\"wheezy\": 7.00\n\t\t\t},\n\t\t\t{\n\t\t\t\t\"Ubuntu\": [\n\t\t\t\t\t\"Kubuntu\",\n\t\t\t\t\t\"Xubuntu\",\n\t\t\t\t\t\"Lubuntu\"\n\t\t\t\t]\n\t\t\t},\n\t\t\t[10.04,10.10,11.04,11.10]\n\t\t]\n\t]\n}\n\n\n>> \njson2data = \n\n    debian: {{1x3 cell}}\n\n>> >> \n%=================================================\n>> %  invalid field-name handling\n>> %=================================================\n\n>> >> \njson2data = \n\n               ValidName: 1\n       x0x5F_InvalidName: 2\n       x0x3A_Field_0x3A_: 3\n    x0xE9A1B9__0xE79BAE_: '\u7edd\u5bc6'\n\n>> >> \n%=================================================\n>> %  a 2D cell array\n>> %=================================================\n\n>> >> >> \nans =\n\n{\n\t\"data2json\": [\n\t\t[\n\t\t\t[\n\t\t\t\t1,\n\t\t\t\t[\n\t\t\t\t\t2,\n\t\t\t\t\t3\n\t\t\t\t]\n\t\t\t],\n\t\t\t7\n\t\t],\n\t\t[\n\t\t\t[\n\t\t\t\t4,\n\t\t\t\t5\n\t\t\t],\n\t\t\t[\n\t\t\t\t8,\n\t\t\t\t9\n\t\t\t]\n\t\t],\n\t\t[\n\t\t\t6,\n\t\t\t10\n\t\t]\n\t]\n}\n\n\n>> \njson2data = \n\n    data2json: {{1x2 cell}  [2x2 double]  [6 10]}\n\n>> >> \n%=================================================\n>> %  a 2D struct array\n>> %=================================================\n\n>> >> \ndata2json = \n\n2x3 struct array with fields:\n    idx\n    data\n\n>> >> \nans =\n\n{\n\t\"data2json\": [\n\t\t[\n\t\t\t{\n\t\t\t\t\"idx\": 1,\n\t\t\t\t\"data\": \"structs\"\n\t\t\t},\n\t\t\t{\n\t\t\t\t\"idx\": 2,\n\t\t\t\t\"data\": \"structs\"\n\t\t\t}\n\t\t],\n\t\t[\n\t\t\t{\n\t\t\t\t\"idx\": 3,\n\t\t\t\t\"data\": \"structs\"\n\t\t\t},\n\t\t\t{\n\t\t\t\t\"idx\": 4,\n\t\t\t\t\"data\": \"structs\"\n\t\t\t}\n\t\t],\n\t\t[\n\t\t\t{\n\t\t\t\t\"idx\": 5,\n\t\t\t\t\"data\": \"structs\"\n\t\t\t},\n\t\t\t{\n\t\t\t\t\"idx\": 6,\n\t\t\t\t\"data\": \"structs\"\n\t\t\t}\n\t\t]\n\t]\n}\n\n\n>> \njson2data = \n\n    data2json: {{1x2 cell}  {1x2 cell}  {1x2 cell}}\n\n>> >> >> >> ","returncode":0,"stderr":"","license":"bsd-3-clause","lang":"Matlab"}
{"commit":"97683c9539bda193ba4e10fe9b90f9305b8241a3","subject":"Update tmp\/bower_components\/ace-builds\/demo\/kitchen-sink\/docs\/matlab.matlab","message":"Update tmp\/bower_components\/ace-builds\/demo\/kitchen-sink\/docs\/matlab.matlab\n\nSigned-off-by: Bernard Ojengwa <fccb4cc00c1ba7e51bf5c2b5f77130b9fe8d917e@gmail.com>\n","repos":"apipanda\/openssl,apipanda\/openssl,apipanda\/openssl,apipanda\/openssl","old_file":"tmp\/bower_components\/ace-builds\/demo\/kitchen-sink\/docs\/matlab.matlab","new_file":"tmp\/bower_components\/ace-builds\/demo\/kitchen-sink\/docs\/matlab.matlab","new_contents":"","old_contents":"%{\n   %{\n      Ace Matlab demo\n   %}\n%}\n\nclassdef hello\n   methods\n      function greet(this)\n         disp('Hello!')  % say hi\n      end\n   end\nend\n\n% transpose \na = [ 'x''y', \"x\\n\\\n      y\", 1' ]' + 2'","returncode":0,"stderr":"","license":"mit","lang":"Matlab"}
{"commit":"368ecc2c9edd872c61cd8f629325b57643cb6d70","subject":"considering matlab version when building the cached startup file","message":"considering matlab version when building the cached startup file\n","repos":"dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim","old_file":"fmri.matlab","new_file":"fmri.matlab","new_contents":"if ~isdeployed,\n\nself=mfilename;\nmatlabver = version('-release');\ncself=[mfilename('fullpath'),'_', matlabver , '_cache.m'];\n[~, snewer]=system(['test ', cself, ' -nt ', self ' && echo 1 || echo 0']);\nif 1==str2num(snewer), %if cache is newer than me\n    fprintf(2, 'Loading cached startup path: %s\\n', cself);\n    %load cache\n    pd=pwd;  path=fileparts(cself);\n    cd(path); path=startup_cache; addpath(path);  cd(pd);\n    clear self snewer cself pd path\n    return\nend %if cself does not exist, it is Ok, system will think it fails to be newer!\n\n%------------ FreeSurfer -----------------------------%\nfshome = getenv('FREESURFER_HOME');\nfsmatlab = sprintf('%s\/matlab',fshome);\nif (exist(fsmatlab) == 7)\n    path(path,fsmatlab);\nend\nclear fshome fsmatlab;\n%-----------------------------------------------------%\n\n%------------ FreeSurfer FAST ------------------------%\nfsfasthome = getenv('FSFAST_HOME');\nfsfasttoolbox = sprintf('%s\/toolbox',fsfasthome);\nif (exist(fsfasttoolbox) == 7)\n    path(path,fsfasttoolbox);\nend\nclear fsfasthome fsfasttoolbox;\n%-----------------------------------------------------%\n\nuser=getenv('USER'),\nnode=getenv('HOSTNAME'),\n%if strcmp(user, 'xst833'),\nif ismember(user, {'xst833', 'tbp688', 'dawnsong', 'songx4'})\n    home = getenv('HOME'),\nelse\n    home = '\/home\/xst833\/';\nend\n\nfmriTools={\n'fmri\/afni.matlab';\n'fmri\/bct.20121204';\n'fmri\/nbs1.2';\n'fmri\/gretna';\n% 'spm12';\n% 'spm12\/toolbox\/cat12';\n'fmri\/spm8';\n'fmri\/spm8\/toolbox\/vbm8';\n'fmri\/surfstat';\n'fmri\/panda\/PANDA';\n'matlab\/gift\/GroupICATv4.0a\/icatb';\n'matlab\/rest\/REST';\n'matlab\/mlsp';\n'matlab\/m2thml';\n'matlab\/BrainNetViewer';\n'matlab\/eig3';\n'matlab\/export_fig';\n'matlab\/ite\/code';\n'matlab\/jsonlab';\n%'matlab\/MIToolbox';\n};\nfor i=1:size(fmriTools, 1),\n    dir=sprintf(['%s\/' fmriTools{i}], home);\n    if exist(dir, 'dir'),\n        addpath(genpath(dir));\n        fprintf(2, sprintf('# Added path: %s\\n', dir));\n    else\n        fprintf(2, sprintf('## Cannot find dir: %s\\n', dir));\n    end\nend\n\n%add my bin path\ndawnbind= getenv('DAWNBIND');\naddpath(genpath(dawnbind));\nclear home fmriTools;\n\nfprintf(2, sprintf('#Cleaning .git .svn dirs\\n'));\n%function filter_path(pattern)\npattern={'.git', '.svn'};\nall = path;\n[entries] = regexp(all, '([^:]+):', 'tokens');\nfor i = 1:length(entries)\n    entry = char(entries{i});\n    for j=1:length(pattern),\n         if (~isempty(strfind(entry, pattern{j})))\n             rmpath(entry);\n         end;\n    end\nend;\nclear all pattern entry entries;\n\n\nsavepath(cself)\nclear self cself snewer\nend %~isdeployed\n","old_contents":"if ~isdeployed,\n\nself=mfilename;\ncself=[mfilename('fullpath'), '_cache.m'];\n[~, snewer]=system(['test ', cself, ' -nt ', self ' && echo 1 || echo 0']);\nif 1==str2num(snewer), %if cache is newer than me\n    fprintf(2, 'Loading cached startup path: %s\\n', cself);\n    %load cache\n    pd=pwd;  path=fileparts(cself);\n    cd(path); path=startup_cache; addpath(path);  cd(pd);\n    clear self snewer cself pd path\n    return\nend %if cself does not exist, it is Ok, system will think it fails to be newer!\n\n%------------ FreeSurfer -----------------------------%\nfshome = getenv('FREESURFER_HOME');\nfsmatlab = sprintf('%s\/matlab',fshome);\nif (exist(fsmatlab) == 7)\n    path(path,fsmatlab);\nend\nclear fshome fsmatlab;\n%-----------------------------------------------------%\n\n%------------ FreeSurfer FAST ------------------------%\nfsfasthome = getenv('FSFAST_HOME');\nfsfasttoolbox = sprintf('%s\/toolbox',fsfasthome);\nif (exist(fsfasttoolbox) == 7)\n    path(path,fsfasttoolbox);\nend\nclear fsfasthome fsfasttoolbox;\n%-----------------------------------------------------%\n\nuser=getenv('USER'),\nnode=getenv('HOSTNAME'),\n%if strcmp(user, 'xst833'),\nif ismember(user, {'xst833', 'tbp688', 'dawnsong', 'songx4'})\n    home = getenv('HOME'),\nelse\n    home = '\/home\/xst833\/';\nend\n\nfmriTools={\n'fmri\/afni.matlab';\n'fmri\/bct.20121204';\n'fmri\/nbs1.2';\n'fmri\/gretna';\n% 'spm12';\n% 'spm12\/toolbox\/cat12';\n'fmri\/spm8';\n'fmri\/spm8\/toolbox\/vbm8';\n'fmri\/surfstat';\n'fmri\/panda\/PANDA';\n'matlab\/gift\/GroupICATv4.0a\/icatb';\n'matlab\/rest\/REST';\n'matlab\/mlsp';\n'matlab\/m2thml';\n'matlab\/BrainNetViewer';\n'matlab\/eig3';\n'matlab\/export_fig';\n'matlab\/ite\/code';\n'matlab\/jsonlab';\n%'matlab\/MIToolbox';\n};\nfor i=1:size(fmriTools, 1),\n    dir=sprintf(['%s\/' fmriTools{i}], home);\n    if exist(dir, 'dir'),\n        addpath(genpath(dir));\n        fprintf(2, sprintf('# Added path: %s\\n', dir));\n    else\n        fprintf(2, sprintf('## Cannot find dir: %s\\n', dir));\n    end\nend\n\n%add my bin path\ndawnbind= getenv('DAWNBIND');\naddpath(genpath(dawnbind));\nclear home fmriTools;\n\nfprintf(2, sprintf('#Cleaning .git .svn dirs\\n'));\n%function filter_path(pattern)\npattern={'.git', '.svn'};\nall = path;\n[entries] = regexp(all, '([^:]+):', 'tokens');\nfor i = 1:length(entries)\n    entry = char(entries{i});\n    for j=1:length(pattern),\n         if (~isempty(strfind(entry, pattern{j})))\n             rmpath(entry);\n         end;\n    end\nend;\nclear all pattern entry entries;\n\n\nsavepath(cself)\nclear self cself snewer\nend %~isdeployed\n","returncode":0,"stderr":"","license":"apache-2.0","lang":"Matlab"}
{"commit":"a49aafcea51733f4505ad4c3d2a7147ad9c26734","subject":"considering my local computer and my NIH account","message":"considering my local computer and my NIH account\n","repos":"dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim","old_file":"fmri.matlab","new_file":"fmri.matlab","new_contents":"if ~isdeployed,\n\nself=mfilename;\ncself=[mfilename('fullpath'), '_cache.m'];\n[~, snewer]=system(['test ', cself, ' -nt ', self ' && echo 1 || echo 0']);\nif 1==str2num(snewer), %if cache is newer than me\n    fprintf(2, 'Loading cached startup path: %s\\n', cself);\n    %load cache\n    pd=pwd;  path=fileparts(cself);\n    cd(path); path=startup_cache; addpath(path);  cd(pd);\n    clear self snewer cself pd path\n    return\nend %if cself does not exist, it is Ok, system will think it fails to be newer!\n\n%------------ FreeSurfer -----------------------------%\nfshome = getenv('FREESURFER_HOME');\nfsmatlab = sprintf('%s\/matlab',fshome);\nif (exist(fsmatlab) == 7)\n    path(path,fsmatlab);\nend\nclear fshome fsmatlab;\n%-----------------------------------------------------%\n\n%------------ FreeSurfer FAST ------------------------%\nfsfasthome = getenv('FSFAST_HOME');\nfsfasttoolbox = sprintf('%s\/toolbox',fsfasthome);\nif (exist(fsfasttoolbox) == 7)\n    path(path,fsfasttoolbox);\nend\nclear fsfasthome fsfasttoolbox;\n%-----------------------------------------------------%\n\nuser=getenv('USER'),\nnode=getenv('HOSTNAME'),\n%if strcmp(user, 'xst833'),\nif ismember(user, {'xst833', 'tbp688', 'dawnsong', 'songx4'})\n    home = getenv('HOME'),\nelse\n    home = '\/home\/xst833\/';\nend\n\nfmriTools={\n'fmri\/afni.matlab';\n'fmri\/bct.20121204';\n'fmri\/nbs1.2';\n'fmri\/gretna';\n% 'spm12';\n% 'spm12\/toolbox\/cat12';\n'fmri\/spm8';\n'fmri\/spm8\/toolbox\/vbm8';\n'fmri\/surfstat';\n'fmri\/panda\/PANDA';\n'matlab\/gift\/GroupICATv4.0a\/icatb';\n'matlab\/rest\/REST';\n'matlab\/mlsp';\n'matlab\/m2thml';\n'matlab\/BrainNetViewer';\n'matlab\/eig3';\n'matlab\/export_fig';\n'matlab\/ite\/code';\n'matlab\/jsonlab';\n%'matlab\/MIToolbox';\n};\nfor i=1:size(fmriTools, 1),\n    dir=sprintf(['%s\/' fmriTools{i}], home);\n    if exist(dir, 'dir'),\n        addpath(genpath(dir));\n        fprintf(2, sprintf('# Added path: %s\\n', dir));\n    else\n        fprintf(2, sprintf('## Cannot find dir: %s\\n', dir));\n    end\nend\n\n%add my bin path\ndawnbind= getenv('DAWNBIND');\naddpath(genpath(dawnbind));\nclear home fmriTools;\n\nfprintf(2, sprintf('#Cleaning .git .svn dirs\\n'));\n%function filter_path(pattern)\npattern={'.git', '.svn'};\nall = path;\n[entries] = regexp(all, '([^:]+):', 'tokens');\nfor i = 1:length(entries)\n    entry = char(entries{i});\n    for j=1:length(pattern),\n         if (~isempty(strfind(entry, pattern{j})))\n             rmpath(entry);\n         end;\n    end\nend;\nclear all pattern entry entries;\n\n\nsavepath(cself)\nclear self cself snewer\nend %~isdeployed\n","old_contents":"if ~isdeployed,\n\nself=mfilename;\ncself=[mfilename('fullpath'), '_cache.m'];\n[~, snewer]=system(['test ', cself, ' -nt ', self ' && echo 1 || echo 0']);\nif 1==str2num(snewer), %if cache is newer than me\n    fprintf(2, 'Loading cached startup path: %s\\n', cself);\n    %load cache\n    pd=pwd;  path=fileparts(cself);\n    cd(path); path=startup_cache; addpath(path);  cd(pd);\n    clear self snewer cself pd path\n    return\nend %if cself does not exist, it is Ok, system will think it fails to be newer!\n\n%------------ FreeSurfer -----------------------------%\nfshome = getenv('FREESURFER_HOME');\nfsmatlab = sprintf('%s\/matlab',fshome);\nif (exist(fsmatlab) == 7)\n    path(path,fsmatlab);\nend\nclear fshome fsmatlab;\n%-----------------------------------------------------%\n\n%------------ FreeSurfer FAST ------------------------%\nfsfasthome = getenv('FSFAST_HOME');\nfsfasttoolbox = sprintf('%s\/toolbox',fsfasthome);\nif (exist(fsfasttoolbox) == 7)\n    path(path,fsfasttoolbox);\nend\nclear fsfasthome fsfasttoolbox;\n%-----------------------------------------------------%\n\nuser=getenv('USER'),\nnode=getenv('HOSTNAME'),\n%if strcmp(user, 'xst833'),\nif ismember(user, {'xst833', 'tbp688'})\n    home = getenv('HOME'),\nelse\n    home = '\/home\/xst833\/';\nend\n\nfmriTools={\n'fmri\/afni.matlab';\n'fmri\/bct.20121204';\n'fmri\/nbs1.2';\n'fmri\/gretna';\n% 'spm12';\n% 'spm12\/toolbox\/cat12';\n'fmri\/spm8';\n'fmri\/spm8\/toolbox\/vbm8';\n'fmri\/surfstat';\n'fmri\/panda\/PANDA';\n'matlab\/gift\/GroupICATv4.0a\/icatb';\n'matlab\/rest\/REST';\n'matlab\/mlsp';\n'matlab\/m2thml';\n'matlab\/BrainNetViewer';\n'matlab\/eig3';\n'matlab\/export_fig';\n'matlab\/ite\/code';\n'matlab\/jsonlab';\n%'matlab\/MIToolbox';\n};\nfor i=1:size(fmriTools, 1),\n    dir=sprintf(['%s\/' fmriTools{i}], home);\n    if exist(dir, 'dir'),\n        addpath(genpath(dir));\n        fprintf(2, sprintf('# Added path: %s\\n', dir));\n    else\n        fprintf(2, sprintf('## Cannot find dir: %s\\n', dir));\n    end\nend\n\n%add my bin path\ndawnbind= getenv('DAWNBIND');\naddpath(genpath(dawnbind));\nclear home fmriTools;\n\nfprintf(2, sprintf('#Cleaning .git .svn dirs\\n'));\n%function filter_path(pattern)\npattern={'.git', '.svn'};\nall = path;\n[entries] = regexp(all, '([^:]+):', 'tokens');\nfor i = 1:length(entries)\n    entry = char(entries{i});\n    for j=1:length(pattern),\n         if (~isempty(strfind(entry, pattern{j})))\n             rmpath(entry);\n         end;\n    end\nend;\nclear all pattern entry entries;\n\n\nsavepath(cself)\nclear self cself snewer\nend %~isdeployed\n","returncode":0,"stderr":"","license":"apache-2.0","lang":"Matlab"}
{"commit":"942600c5fcd8e5d14ebf0a834222f846c2e60543","subject":"update test output after correcting the indentation bug","message":"update test output after correcting the indentation bug\n\ngit-svn-id: 0dfcd2cbfde11cd338b51061f2a1a040b934da89@464 786e58fb-9377-0410-9ff7-e4ac0ac0635c\n","repos":"fangq\/jsonlab,fangq\/jsonlab","old_file":"examples\/jsonlab_basictest.matlab","new_file":"examples\/jsonlab_basictest.matlab","new_contents":"\n                              < M A T L A B >\n                  Copyright 1984-2007 The MathWorks, Inc.\n                         Version 7.4.0.287 (R2007a)\n                              January 29, 2007\n\n \n  To get started, type one of these: helpwin, helpdesk, or demo.\n  For product information, visit www.mathworks.com.\n \n>> >> >> >> >> >> >> >> >> \n%=================================================\n>> %  a simple scalar value \n>> %=================================================\n\n>> >> \ndata2json =\n\n    3.1416\n\n>> \nans =\n\n[3.141592654]\n\n\n>> \njson2data =\n\n    3.1416\n\n>> >> \n%=================================================\n>> %  a complex number\n>> %=================================================\n\n>> >> >> \ndata2json =\n\n   1.0000 + 2.0000i\n\n>> \nans =\n\n{\n\t\"_ArrayType_\": \"double\",\n\t\"_ArraySize_\": [1,1],\n\t\"_ArrayIsComplex_\": 1,\n\t\"_ArrayData_\": [1,2]\n}\n\n\n>> \njson2data =\n\n   1.0000 + 2.0000i\n\n>> >> \n%=================================================\n>> %  a complex matrix\n>> %=================================================\n\n>> >> >> \ndata2json =\n\n  35.0000 +26.0000i   1.0000 +19.0000i   6.0000 +24.0000i\n   3.0000 +21.0000i  32.0000 +23.0000i   7.0000 +25.0000i\n  31.0000 +22.0000i   9.0000 +27.0000i   2.0000 +20.0000i\n   8.0000 +17.0000i  28.0000 +10.0000i  33.0000 +15.0000i\n  30.0000 +12.0000i   5.0000 +14.0000i  34.0000 +16.0000i\n   4.0000 +13.0000i  36.0000 +18.0000i  29.0000 +11.0000i\n\n>> \nans =\n\n{\n\t\"_ArrayType_\": \"double\",\n\t\"_ArraySize_\": [6,3],\n\t\"_ArrayIsComplex_\": 1,\n\t\"_ArrayData_\": [\n\t\t[35,26],\n\t\t[3,21],\n\t\t[31,22],\n\t\t[8,17],\n\t\t[30,12],\n\t\t[4,13],\n\t\t[1,19],\n\t\t[32,23],\n\t\t[9,27],\n\t\t[28,10],\n\t\t[5,14],\n\t\t[36,18],\n\t\t[6,24],\n\t\t[7,25],\n\t\t[2,20],\n\t\t[33,15],\n\t\t[34,16],\n\t\t[29,11]\n\t]\n}\n\n\n>> \njson2data =\n\n  35.0000 +26.0000i   1.0000 +19.0000i   6.0000 +24.0000i\n   3.0000 +21.0000i  32.0000 +23.0000i   7.0000 +25.0000i\n  31.0000 +22.0000i   9.0000 +27.0000i   2.0000 +20.0000i\n   8.0000 +17.0000i  28.0000 +10.0000i  33.0000 +15.0000i\n  30.0000 +12.0000i   5.0000 +14.0000i  34.0000 +16.0000i\n   4.0000 +13.0000i  36.0000 +18.0000i  29.0000 +11.0000i\n\n>> >> \n%=================================================\n>> %  MATLAB special constants\n>> %=================================================\n\n>> >> \ndata2json =\n\n   NaN   Inf  -Inf\n\n>> \nans =\n\n{\n\t\"specials\": [\"_NaN_\",\"_Inf_\",\"-_Inf_\"]\n}\n\n\n>> \njson2data = \n\n    specials: [NaN Inf -Inf]\n\n>> >> \n%=================================================\n>> %  a real sparse matrix\n>> %=================================================\n\n>> >> \ndata2json =\n\n   (1,2)       0.6557\n   (9,2)       0.7577\n   (3,5)       0.8491\n  (10,5)       0.7431\n  (10,8)       0.3922\n   (7,9)       0.6787\n   (2,10)      0.0357\n   (6,10)      0.9340\n  (10,10)      0.6555\n\n>> \nans =\n\n{\n\t\"sparse\": {\n\t\t\"_ArrayType_\": \"double\",\n\t\t\"_ArraySize_\": [10,10],\n\t\t\"_ArrayIsSparse_\": 1,\n\t\t\"_ArrayData_\": [\n\t\t\t[1,2,0.6557406992],\n\t\t\t[9,2,0.7577401306],\n\t\t\t[3,5,0.8491293059],\n\t\t\t[10,5,0.7431324681],\n\t\t\t[10,8,0.3922270195],\n\t\t\t[7,9,0.6787351549],\n\t\t\t[2,10,0.03571167857],\n\t\t\t[6,10,0.9339932478],\n\t\t\t[10,10,0.6554778902]\n\t\t]\n\t}\n}\n\n\n>> \njson2data = \n\n    sparse: [10x10 double]\n\n>> >> \n%=================================================\n>> %  a complex sparse matrix\n>> %=================================================\n\n>> >> \ndata2json =\n\n   (1,2)      0.6557 - 0.6557i\n   (9,2)      0.7577 - 0.7577i\n   (3,5)      0.8491 - 0.8491i\n  (10,5)      0.7431 - 0.7431i\n  (10,8)      0.3922 - 0.3922i\n   (7,9)      0.6787 - 0.6787i\n   (2,10)     0.0357 - 0.0357i\n   (6,10)     0.9340 - 0.9340i\n  (10,10)     0.6555 - 0.6555i\n\n>> \nans =\n\n{\n\t\"complex_sparse\": {\n\t\t\"_ArrayType_\": \"double\",\n\t\t\"_ArraySize_\": [10,10],\n\t\t\"_ArrayIsComplex_\": 1,\n\t\t\"_ArrayIsSparse_\": 1,\n\t\t\"_ArrayData_\": [\n\t\t\t[1,2,0.6557406992,-0.6557406992],\n\t\t\t[9,2,0.7577401306,-0.7577401306],\n\t\t\t[3,5,0.8491293059,-0.8491293059],\n\t\t\t[10,5,0.7431324681,-0.7431324681],\n\t\t\t[10,8,0.3922270195,-0.3922270195],\n\t\t\t[7,9,0.6787351549,-0.6787351549],\n\t\t\t[2,10,0.03571167857,-0.03571167857],\n\t\t\t[6,10,0.9339932478,-0.9339932478],\n\t\t\t[10,10,0.6554778902,-0.6554778902]\n\t\t]\n\t}\n}\n\n\n>> \njson2data = \n\n    complex_sparse: [10x10 double]\n\n>> >> \n%=================================================\n>> %  an all-zero sparse matrix\n>> %=================================================\n\n>> >> >> \nans =\n\n{\n\t\"all_zero_sparse\": {\n\t\t\"_ArrayType_\": \"double\",\n\t\t\"_ArraySize_\": [2,3],\n\t\t\"_ArrayIsSparse_\": 1,\n\t\t\"_ArrayData_\": null\n\t}\n}\n\n\n>> \njson2data = \n\n    all_zero_sparse: [2x3 double]\n\n>> >> \n%=================================================\n>> %  an empty sparse matrix\n>> %=================================================\n\n>> >> >> \nans =\n\n{\n\t\"empty_sparse\": {\n\t\t\"_ArrayType_\": \"double\",\n\t\t\"_ArraySize_\": [0,0],\n\t\t\"_ArrayIsSparse_\": 1,\n\t\t\"_ArrayData_\": null\n\t}\n}\n\n\n>> \njson2data = \n\n    empty_sparse: []\n\n>> >> \n%=================================================\n>> %  an empty 0-by-0 real matrix\n>> %=================================================\n\n>> >> >> \nans =\n\n{\n\t\"empty_0by0_real\": {\n\t\t\"_ArrayType_\": \"double\",\n\t\t\"_ArraySize_\": [0,0],\n\t\t\"_ArrayData_\": null\n\t}\n}\n\n\n>> \njson2data = \n\n    empty_0by0_real: []\n\n>> >> \n%=================================================\n>> %  an empty 0-by-3 real matrix\n>> %=================================================\n\n>> >> >> \nans =\n\n{\n\t\"empty_0by3_real\": {\n\t\t\"_ArrayType_\": \"double\",\n\t\t\"_ArraySize_\": [0,3],\n\t\t\"_ArrayData_\": null\n\t}\n}\n\n\n>> \njson2data = \n\n    empty_0by3_real: [0x3 double]\n\n>> >> \n%=================================================\n>> %  a sparse real column vector\n>> %=================================================\n\n>> >> >> \nans =\n\n{\n\t\"sparse_column_vector\": {\n\t\t\"_ArrayType_\": \"double\",\n\t\t\"_ArraySize_\": [5,1],\n\t\t\"_ArrayIsSparse_\": 1,\n\t\t\"_ArrayData_\": [\n\t\t\t[2,3],\n\t\t\t[4,1],\n\t\t\t[5,4]\n\t\t]\n\t}\n}\n\n\n>> \njson2data = \n\n    sparse_column_vector: [5x1 double]\n\n>> >> \n%=================================================\n>> %  a sparse complex column vector\n>> %=================================================\n\n>> >> >> \nans =\n\n{\n\t\"complex_sparse_column_vector\": {\n\t\t\"_ArrayType_\": \"double\",\n\t\t\"_ArraySize_\": [5,1],\n\t\t\"_ArrayIsComplex_\": 1,\n\t\t\"_ArrayIsSparse_\": 1,\n\t\t\"_ArrayData_\": [\n\t\t\t[2,3,-3],\n\t\t\t[4,1,-1],\n\t\t\t[5,4,-4]\n\t\t]\n\t}\n}\n\n\n>> \njson2data = \n\n    complex_sparse_column_vector: [5x1 double]\n\n>> >> \n%=================================================\n>> %  a sparse real row vector\n>> %=================================================\n\n>> >> >> \nans =\n\n{\n\t\"sparse_row_vector\": {\n\t\t\"_ArrayType_\": \"double\",\n\t\t\"_ArraySize_\": [1,5],\n\t\t\"_ArrayIsSparse_\": 1,\n\t\t\"_ArrayData_\": [\n\t\t\t[2,3],\n\t\t\t[4,1],\n\t\t\t[5,4]\n\t\t]\n\t}\n}\n\n\n>> \njson2data = \n\n    sparse_row_vector: [0 3 0 1 4]\n\n>> >> \n%=================================================\n>> %  a sparse complex row vector\n>> %=================================================\n\n>> >> >> \nans =\n\n{\n\t\"complex_sparse_row_vector\": {\n\t\t\"_ArrayType_\": \"double\",\n\t\t\"_ArraySize_\": [1,5],\n\t\t\"_ArrayIsComplex_\": 1,\n\t\t\"_ArrayIsSparse_\": 1,\n\t\t\"_ArrayData_\": [\n\t\t\t[2,3,-3],\n\t\t\t[4,1,-1],\n\t\t\t[5,4,-4]\n\t\t]\n\t}\n}\n\n\n>> \njson2data = \n\n    complex_sparse_row_vector: [1x5 double]\n\n>> >> \n%=================================================\n>> %  a structure\n>> %=================================================\n\n>> >> \ndata2json = \n\n        name: 'Think Different'\n        year: 1997\n       magic: [3x3 double]\n     misfits: [Inf NaN]\n    embedded: [1x1 struct]\n\n>> \nans =\n\n{\n\t\"astruct\": {\n\t\t\"name\": \"Think Different\",\n\t\t\"year\": 1997,\n\t\t\"magic\": [\n\t\t\t[8,1,6],\n\t\t\t[3,5,7],\n\t\t\t[4,9,2]\n\t\t],\n\t\t\"misfits\": [\"_Inf_\",\"_NaN_\"],\n\t\t\"embedded\": {\n\t\t\t\"left\": true,\n\t\t\t\"right\": false\n\t\t}\n\t}\n}\n\n\n>> \njson2data = \n\n    astruct: [1x1 struct]\n\n>> >> \n%=================================================\n>> %  a structure array\n>> %=================================================\n\n>> >> >> >> >> \nans =\n\n{\n\t\"Supreme Commander\": [\n\t\t{\n\t\t\t\"name\": \"Nexus Prime\",\n\t\t\t\"rank\": 9\n\t\t},\n\t\t{\n\t\t\t\"name\": \"Sentinel Prime\",\n\t\t\t\"rank\": 9\n\t\t},\n\t\t{\n\t\t\t\"name\": \"Optimus Prime\",\n\t\t\t\"rank\": 9\n\t\t}\n\t]\n}\n\n\n>> \njson2data = \n\n    Supreme_0x20_Commander: {[1x1 struct]  [1x1 struct]  [1x1 struct]}\n\n>> >> \n%=================================================\n>> %  a cell array\n>> %=================================================\n\n>> >> >> >> >> \ndata2json = \n\n    [1x1 struct]\n    [1x1 struct]\n    [1x4 double]\n\n>> \nans =\n\n{\n\t\"debian\": [\n\t\t[\n\t\t\t{\n\t\t\t\t\"buzz\": 1.10,\n\t\t\t\t\"rex\": 1.20,\n\t\t\t\t\"bo\": 1.30,\n\t\t\t\t\"hamm\": 2.00,\n\t\t\t\t\"slink\": 2.10,\n\t\t\t\t\"potato\": 2.20,\n\t\t\t\t\"woody\": 3.00,\n\t\t\t\t\"sarge\": 3.10,\n\t\t\t\t\"etch\": 4.00,\n\t\t\t\t\"lenny\": 5.00,\n\t\t\t\t\"squeeze\": 6.00,\n\t\t\t\t\"wheezy\": 7.00\n\t\t\t},\n\t\t\t{\n\t\t\t\t\"Ubuntu\": [\n\t\t\t\t\t\"Kubuntu\",\n\t\t\t\t\t\"Xubuntu\",\n\t\t\t\t\t\"Lubuntu\"\n\t\t\t\t]\n\t\t\t},\n\t\t\t[10.04,10.10,11.04,11.10]\n\t\t]\n\t]\n}\n\n\n>> \njson2data = \n\n    debian: {{1x3 cell}}\n\n>> >> \n%=================================================\n>> %  invalid field-name handling\n>> %=================================================\n\n>> >> \njson2data = \n\n               ValidName: 1\n       x0x5F_InvalidName: 2\n       x0x3A_Field_0x3A_: 3\n    x0xE9A1B9__0xE79BAE_: '\u7edd\u5bc6'\n\n>> >> \n%=================================================\n>> %  a 2D cell array\n>> %=================================================\n\n>> >> >> \nans =\n\n{\n\t\"data2json\": [\n\t\t[\n\t\t\t[\n\t\t\t\t1,\n\t\t\t\t[\n\t\t\t\t\t2,\n\t\t\t\t\t3\n\t\t\t\t]\n\t\t\t],\n\t\t\t7\n\t\t],\n\t\t[\n\t\t\t[\n\t\t\t\t4,\n\t\t\t\t5\n\t\t\t],\n\t\t\t[\n\t\t\t\t8,\n\t\t\t\t9\n\t\t\t]\n\t\t],\n\t\t[\n\t\t\t6,\n\t\t\t10\n\t\t]\n\t]\n}\n\n\n>> \njson2data = \n\n    data2json: {{1x2 cell}  [2x2 double]  [6 10]}\n\n>> >> \n%=================================================\n>> %  a 2D struct array\n>> %=================================================\n\n>> >> \ndata2json = \n\n2x3 struct array with fields:\n    idx\n    data\n\n>> >> \nans =\n\n{\n\t\"data2json\": [\n\t\t[\n\t\t\t{\n\t\t\t\t\"idx\": 1,\n\t\t\t\t\"data\": \"structs\"\n\t\t\t},\n\t\t\t{\n\t\t\t\t\"idx\": 2,\n\t\t\t\t\"data\": \"structs\"\n\t\t\t}\n\t\t],\n\t\t[\n\t\t\t{\n\t\t\t\t\"idx\": 3,\n\t\t\t\t\"data\": \"structs\"\n\t\t\t},\n\t\t\t{\n\t\t\t\t\"idx\": 4,\n\t\t\t\t\"data\": \"structs\"\n\t\t\t}\n\t\t],\n\t\t[\n\t\t\t{\n\t\t\t\t\"idx\": 5,\n\t\t\t\t\"data\": \"structs\"\n\t\t\t},\n\t\t\t{\n\t\t\t\t\"idx\": 6,\n\t\t\t\t\"data\": \"structs\"\n\t\t\t}\n\t\t]\n\t]\n}\n\n\n>> \njson2data = \n\n    data2json: {{1x2 cell}  {1x2 cell}  {1x2 cell}}\n\n>> >> >> >> ","old_contents":"\n                              < M A T L A B >\n                  Copyright 1984-2007 The MathWorks, Inc.\n                         Version 7.4.0.287 (R2007a)\n                              January 29, 2007\n\n \n  To get started, type one of these: helpwin, helpdesk, or demo.\n  For product information, visit www.mathworks.com.\n \n>> >> >> >> >> >> >> >> >> \n%=================================================\n>> %  a simple scalar value \n>> %=================================================\n\n>> >> \ndata2json =\n\n    3.1416\n\n>> \nans =\n\n[3.141592654]\n\n\n>> \njson2data =\n\n    3.1416\n\n>> >> \n%=================================================\n>> %  a complex number\n>> %=================================================\n\n>> >> >> \ndata2json =\n\n   1.0000 + 2.0000i\n\n>> \nans =\n\n{\n\t\"_ArrayType_\": \"double\",\n\t\"_ArraySize_\": [1,1],\n\t\"_ArrayIsComplex_\": 1,\n\t\"_ArrayData_\": [1,2]\n}\n\n\n>> \njson2data =\n\n   1.0000 + 2.0000i\n\n>> >> \n%=================================================\n>> %  a complex matrix\n>> %=================================================\n\n>> >> >> \ndata2json =\n\n  35.0000 +26.0000i   1.0000 +19.0000i   6.0000 +24.0000i\n   3.0000 +21.0000i  32.0000 +23.0000i   7.0000 +25.0000i\n  31.0000 +22.0000i   9.0000 +27.0000i   2.0000 +20.0000i\n   8.0000 +17.0000i  28.0000 +10.0000i  33.0000 +15.0000i\n  30.0000 +12.0000i   5.0000 +14.0000i  34.0000 +16.0000i\n   4.0000 +13.0000i  36.0000 +18.0000i  29.0000 +11.0000i\n\n>> \nans =\n\n{\n\t\"_ArrayType_\": \"double\",\n\t\"_ArraySize_\": [6,3],\n\t\"_ArrayIsComplex_\": 1,\n\t\"_ArrayData_\": [\n\t\t[35,26],\n\t\t[3,21],\n\t\t[31,22],\n\t\t[8,17],\n\t\t[30,12],\n\t\t[4,13],\n\t\t[1,19],\n\t\t[32,23],\n\t\t[9,27],\n\t\t[28,10],\n\t\t[5,14],\n\t\t[36,18],\n\t\t[6,24],\n\t\t[7,25],\n\t\t[2,20],\n\t\t[33,15],\n\t\t[34,16],\n\t\t[29,11]\n\t]\n}\n\n\n>> \njson2data =\n\n  35.0000 +26.0000i   1.0000 +19.0000i   6.0000 +24.0000i\n   3.0000 +21.0000i  32.0000 +23.0000i   7.0000 +25.0000i\n  31.0000 +22.0000i   9.0000 +27.0000i   2.0000 +20.0000i\n   8.0000 +17.0000i  28.0000 +10.0000i  33.0000 +15.0000i\n  30.0000 +12.0000i   5.0000 +14.0000i  34.0000 +16.0000i\n   4.0000 +13.0000i  36.0000 +18.0000i  29.0000 +11.0000i\n\n>> >> \n%=================================================\n>> %  MATLAB special constants\n>> %=================================================\n\n>> >> \ndata2json =\n\n   NaN   Inf  -Inf\n\n>> \nans =\n\n{\n\t\"specials\": [\"_NaN_\",\"_Inf_\",\"-_Inf_\"]\n}\n\n\n>> \njson2data = \n\n    specials: [NaN Inf -Inf]\n\n>> >> \n%=================================================\n>> %  a real sparse matrix\n>> %=================================================\n\n>> >> \ndata2json =\n\n   (1,2)       0.6557\n   (9,2)       0.7577\n   (3,5)       0.8491\n  (10,5)       0.7431\n  (10,8)       0.3922\n   (7,9)       0.6787\n   (2,10)      0.0357\n   (6,10)      0.9340\n  (10,10)      0.6555\n\n>> \nans =\n\n{\n\t\"sparse\": {\n\t\t\"_ArrayType_\": \"double\",\n\t\t\"_ArraySize_\": [10,10],\n\t\t\"_ArrayIsSparse_\": 1,\n\t\t\"_ArrayData_\": [\n\t\t\t[1,2,0.6557406992],\n\t\t\t[9,2,0.7577401306],\n\t\t\t[3,5,0.8491293059],\n\t\t\t[10,5,0.7431324681],\n\t\t\t[10,8,0.3922270195],\n\t\t\t[7,9,0.6787351549],\n\t\t\t[2,10,0.03571167857],\n\t\t\t[6,10,0.9339932478],\n\t\t\t[10,10,0.6554778902]\n\t\t]\n\t}\n}\n\n\n>> \njson2data = \n\n    sparse: [10x10 double]\n\n>> >> \n%=================================================\n>> %  a complex sparse matrix\n>> %=================================================\n\n>> >> \ndata2json =\n\n   (1,2)      0.6557 - 0.6557i\n   (9,2)      0.7577 - 0.7577i\n   (3,5)      0.8491 - 0.8491i\n  (10,5)      0.7431 - 0.7431i\n  (10,8)      0.3922 - 0.3922i\n   (7,9)      0.6787 - 0.6787i\n   (2,10)     0.0357 - 0.0357i\n   (6,10)     0.9340 - 0.9340i\n  (10,10)     0.6555 - 0.6555i\n\n>> \nans =\n\n{\n\t\"complex_sparse\": {\n\t\t\"_ArrayType_\": \"double\",\n\t\t\"_ArraySize_\": [10,10],\n\t\t\"_ArrayIsComplex_\": 1,\n\t\t\"_ArrayIsSparse_\": 1,\n\t\t\"_ArrayData_\": [\n\t\t\t[1,2,0.6557406992,-0.6557406992],\n\t\t\t[9,2,0.7577401306,-0.7577401306],\n\t\t\t[3,5,0.8491293059,-0.8491293059],\n\t\t\t[10,5,0.7431324681,-0.7431324681],\n\t\t\t[10,8,0.3922270195,-0.3922270195],\n\t\t\t[7,9,0.6787351549,-0.6787351549],\n\t\t\t[2,10,0.03571167857,-0.03571167857],\n\t\t\t[6,10,0.9339932478,-0.9339932478],\n\t\t\t[10,10,0.6554778902,-0.6554778902]\n\t\t]\n\t}\n}\n\n\n>> \njson2data = \n\n    complex_sparse: [10x10 double]\n\n>> >> \n%=================================================\n>> %  an all-zero sparse matrix\n>> %=================================================\n\n>> >> >> \nans =\n\n{\n\t\"all_zero_sparse\": {\n\t\t\"_ArrayType_\": \"double\",\n\t\t\"_ArraySize_\": [2,3],\n\t\t\"_ArrayIsSparse_\": 1,\n\t\t\"_ArrayData_\": null\n\t}\n}\n\n\n>> \njson2data = \n\n    all_zero_sparse: [2x3 double]\n\n>> >> \n%=================================================\n>> %  an empty sparse matrix\n>> %=================================================\n\n>> >> >> \nans =\n\n{\n\t\"empty_sparse\": {\n\t\t\"_ArrayType_\": \"double\",\n\t\t\"_ArraySize_\": [0,0],\n\t\t\"_ArrayIsSparse_\": 1,\n\t\t\"_ArrayData_\": null\n\t}\n}\n\n\n>> \njson2data = \n\n    empty_sparse: []\n\n>> >> \n%=================================================\n>> %  an empty 0-by-0 real matrix\n>> %=================================================\n\n>> >> >> \nans =\n\n{\n\t\"empty_0by0_real\": {\n\t\t\"_ArrayType_\": \"double\",\n\t\t\"_ArraySize_\": [0,0],\n\t\t\"_ArrayData_\": null\n\t}\n}\n\n\n>> \njson2data = \n\n    empty_0by0_real: []\n\n>> >> \n%=================================================\n>> %  an empty 0-by-3 real matrix\n>> %=================================================\n\n>> >> >> \nans =\n\n{\n\t\"empty_0by3_real\": {\n\t\t\"_ArrayType_\": \"double\",\n\t\t\"_ArraySize_\": [0,3],\n\t\t\"_ArrayData_\": null\n\t}\n}\n\n\n>> \njson2data = \n\n    empty_0by3_real: [0x3 double]\n\n>> >> \n%=================================================\n>> %  a sparse real column vector\n>> %=================================================\n\n>> >> >> \nans =\n\n{\n\t\"sparse_column_vector\": {\n\t\t\"_ArrayType_\": \"double\",\n\t\t\"_ArraySize_\": [5,1],\n\t\t\"_ArrayIsSparse_\": 1,\n\t\t\"_ArrayData_\": [\n\t\t\t[2,3],\n\t\t\t[4,1],\n\t\t\t[5,4]\n\t\t]\n\t}\n}\n\n\n>> \njson2data = \n\n    sparse_column_vector: [5x1 double]\n\n>> >> \n%=================================================\n>> %  a sparse complex column vector\n>> %=================================================\n\n>> >> >> \nans =\n\n{\n\t\"complex_sparse_column_vector\": {\n\t\t\"_ArrayType_\": \"double\",\n\t\t\"_ArraySize_\": [5,1],\n\t\t\"_ArrayIsComplex_\": 1,\n\t\t\"_ArrayIsSparse_\": 1,\n\t\t\"_ArrayData_\": [\n\t\t\t[2,3,-3],\n\t\t\t[4,1,-1],\n\t\t\t[5,4,-4]\n\t\t]\n\t}\n}\n\n\n>> \njson2data = \n\n    complex_sparse_column_vector: [5x1 double]\n\n>> >> \n%=================================================\n>> %  a sparse real row vector\n>> %=================================================\n\n>> >> >> \nans =\n\n{\n\t\"sparse_row_vector\": {\n\t\t\"_ArrayType_\": \"double\",\n\t\t\"_ArraySize_\": [1,5],\n\t\t\"_ArrayIsSparse_\": 1,\n\t\t\"_ArrayData_\": [\n\t\t\t[2,3],\n\t\t\t[4,1],\n\t\t\t[5,4]\n\t\t]\n\t}\n}\n\n\n>> \njson2data = \n\n    sparse_row_vector: [0 3 0 1 4]\n\n>> >> \n%=================================================\n>> %  a sparse complex row vector\n>> %=================================================\n\n>> >> >> \nans =\n\n{\n\t\"complex_sparse_row_vector\": {\n\t\t\"_ArrayType_\": \"double\",\n\t\t\"_ArraySize_\": [1,5],\n\t\t\"_ArrayIsComplex_\": 1,\n\t\t\"_ArrayIsSparse_\": 1,\n\t\t\"_ArrayData_\": [\n\t\t\t[2,3,-3],\n\t\t\t[4,1,-1],\n\t\t\t[5,4,-4]\n\t\t]\n\t}\n}\n\n\n>> \njson2data = \n\n    complex_sparse_row_vector: [1x5 double]\n\n>> >> \n%=================================================\n>> %  a structure\n>> %=================================================\n\n>> >> \ndata2json = \n\n        name: 'Think Different'\n        year: 1997\n       magic: [3x3 double]\n     misfits: [Inf NaN]\n    embedded: [1x1 struct]\n\n>> \nans =\n\n{\n\t\"astruct\": {\n\t\t\"name\": \"Think Different\",\n\t\t\"year\": 1997,\n\t\t\"magic\": [\n\t\t\t[8,1,6],\n\t\t\t[3,5,7],\n\t\t\t[4,9,2]\n\t\t],\n\t\t\"misfits\": [\"_Inf_\",\"_NaN_\"],\n\t\t\"embedded\": {\n\t\t\t\"left\": true,\n\t\t\t\"right\": false\n\t\t}\n\t}\n}\n\n\n>> \njson2data = \n\n    astruct: [1x1 struct]\n\n>> >> \n%=================================================\n>> %  a structure array\n>> %=================================================\n\n>> >> >> >> >> \nans =\n\n{\n\t\"Supreme Commander\": [\n\t\t{\n\t\t\t\"name\": \"Nexus Prime\",\n\t\t\t\"rank\": 9\n\t\t},\n\t\t{\n\t\t\t\"name\": \"Sentinel Prime\",\n\t\t\t\"rank\": 9\n\t\t},\n\t\t{\n\t\t\t\"name\": \"Optimus Prime\",\n\t\t\t\"rank\": 9\n\t\t}\n\t]\n}\n\n\n>> \njson2data = \n\n    Supreme_0x20_Commander: {[1x1 struct]  [1x1 struct]  [1x1 struct]}\n\n>> >> \n%=================================================\n>> %  a cell array\n>> %=================================================\n\n>> >> >> >> >> \ndata2json = \n\n    [1x1 struct]\n    [1x1 struct]\n    [1x4 double]\n\n>> \nans =\n\n{\n\t\"debian\": [\n\t\t[\n\t\t\t{\n\t\t\t\t\"buzz\": 1.10,\n\t\t\t\t\"rex\": 1.20,\n\t\t\t\t\"bo\": 1.30,\n\t\t\t\t\"hamm\": 2.00,\n\t\t\t\t\"slink\": 2.10,\n\t\t\t\t\"potato\": 2.20,\n\t\t\t\t\"woody\": 3.00,\n\t\t\t\t\"sarge\": 3.10,\n\t\t\t\t\"etch\": 4.00,\n\t\t\t\t\"lenny\": 5.00,\n\t\t\t\t\"squeeze\": 6.00,\n\t\t\t\t\"wheezy\": 7.00\n\t\t\t},\n\t\t\t{\n\t\t\t\t\"Ubuntu\": [\n\t\t\t\t\t\"Kubuntu\",\n\t\t\t\t\t\"Xubuntu\",\n\t\t\t\t\t\"Lubuntu\"\n\t\t\t\t]\n\t\t\t},\n\t\t\t[10.04,10.10,11.04,11.10]\n\t\t]\n\t]\n}\n\n\n>> \njson2data = \n\n    debian: {{1x3 cell}}\n\n>> >> \n%=================================================\n>> %  invalid field-name handling\n>> %=================================================\n\n>> >> \njson2data = \n\n               ValidName: 1\n       x0x5F_InvalidName: 2\n       x0x3A_Field_0x3A_: 3\n    x0xE9A1B9__0xE79BAE_: '\u7edd\u5bc6'\n\n>> >> \n%=================================================\n>> %  a 2D cell array\n>> %=================================================\n\n>> >> >> \nans =\n\n{\n\t\"data2json\": [\n\t\t[\n\t\t\t[\n\t\t\t\t1,\n\t\t\t\t[\n\t\t\t\t\t2,\n\t\t\t\t\t3\n\t\t\t\t]\n\t\t\t],\n\t\t\t\t7\n\t\t],\n\t\t[\n\t\t\t[\n\t\t\t\t4,\n\t\t\t\t5\n\t\t\t],\n\t\t\t[\n\t\t\t\t8,\n\t\t\t\t9\n\t\t\t]\n\t\t],\n\t\t[\n\t\t\t\t6,\n\t\t\t\t10\n\t\t]\n\t]\n}\n\n\n>> \njson2data = \n\n    data2json: {{1x2 cell}  [2x2 double]  [6 10]}\n\n>> >> \n%=================================================\n>> %  a 2D struct array\n>> %=================================================\n\n>> >> \ndata2json = \n\n2x3 struct array with fields:\n    idx\n    data\n\n>> >> \nans =\n\n{\n\t\"data2json\": [\n\t\t[\n\t\t\t{\n\t\t\t\t\"idx\": 1,\n\t\t\t\t\"data\": \"structs\"\n\t\t\t},\n\t\t\t{\n\t\t\t\t\"idx\": 2,\n\t\t\t\t\"data\": \"structs\"\n\t\t\t}\n\t\t],\n\t\t[\n\t\t\t{\n\t\t\t\t\"idx\": 3,\n\t\t\t\t\"data\": \"structs\"\n\t\t\t},\n\t\t\t{\n\t\t\t\t\"idx\": 4,\n\t\t\t\t\"data\": \"structs\"\n\t\t\t}\n\t\t],\n\t\t[\n\t\t\t{\n\t\t\t\t\"idx\": 5,\n\t\t\t\t\"data\": \"structs\"\n\t\t\t},\n\t\t\t{\n\t\t\t\t\"idx\": 6,\n\t\t\t\t\"data\": \"structs\"\n\t\t\t}\n\t\t]\n\t]\n}\n\n\n>> \njson2data = \n\n    data2json: {{1x2 cell}  {1x2 cell}  {1x2 cell}}\n\n>> >> >> >> ","returncode":0,"stderr":"","license":"bsd-3-clause","lang":"Matlab"}
{"commit":"25fa522796456cd7e603f9d03021b0394d0a587a","subject":"use cache to speedup loading paths","message":"use cache to speedup loading paths\n","repos":"dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim","old_file":"fmri.matlab","new_file":"fmri.matlab","new_contents":"if ~isdeployed,\n\nself=mfilename;\ncself=[mfilename('fullpath'), '_cache.m'];\n[~, snewer]=system(['test ', cself, ' -nt ', self ' && echo 1 || echo 0']);\nif 1==str2num(snewer), %if cache is newer than me\n    fprintf(2, 'Loading cached startup path: %s\\n', cself);\n    %load cache\n    pd=pwd;  path=fileparts(cself);\n    cd(path); path=startup_cache; addpath(path);  cd(pd);\n    clear self snewer cself pd path\n    return\nend %if cself does not exist, it is Ok, system will think it fails to be newer!\n\n%------------ FreeSurfer -----------------------------%\nfshome = getenv('FREESURFER_HOME');\nfsmatlab = sprintf('%s\/matlab',fshome);\nif (exist(fsmatlab) == 7)\n    path(path,fsmatlab);\nend\nclear fshome fsmatlab;\n%-----------------------------------------------------%\n\n%------------ FreeSurfer FAST ------------------------%\nfsfasthome = getenv('FSFAST_HOME');\nfsfasttoolbox = sprintf('%s\/toolbox',fsfasthome);\nif (exist(fsfasttoolbox) == 7)\n    path(path,fsfasttoolbox);\nend\nclear fsfasthome fsfasttoolbox;\n%-----------------------------------------------------%\n\nuser=getenv('USER'),\nnode=getenv('HOSTNAME'),\n%if strcmp(user, 'xst833'),\n    home = getenv('HOME');\n%else\n%    home = '\/home\/xst833\/';\n%end\n\nfmriTools={\n'fmri\/afni.matlab';\n'fmri\/bct.20121204';\n'fmri\/nbs1.2';\n'gretna';\n% 'spm12';\n% 'spm12\/toolbox\/cat12';\n'spm8';\n'spm8\/toolbox\/vbm8';\n'surfstat';\n'panda\/PANDA';\n'matlab\/gift\/GroupICATv4.0a\/icatb';\n'matlab\/rest\/REST';\n'matlab\/mlsp';\n'matlab\/m2thml';\n'matlab\/BrainNetViewer';\n'matlab\/eig3';\n'matlab\/export_fig';\n'matlab\/ite\/code';\n'matlab\/jsonlab';\n%'matlab\/MIToolbox';\n};\nfor i=1:size(fmriTools, 1),\n    dir=sprintf(['%s\/' fmriTools{i}], home);\n    if exist(dir, 'dir'),\n        addpath(genpath(dir));\n        fprintf(2, sprintf('# Added path: %s\\n', dir));\n    else\n        fprintf(2, sprintf('## Cannot find dir: %s\\n', dir));\n    end\nend\n\n%add my bin path\ndawnbind= getenv('DAWNBIND');\naddpath(genpath(dawnbind));\nclear home fmriTools;\n\nfprintf(2, sprintf('#Cleaning .git .svn dirs\\n'));\n%function filter_path(pattern)\npattern={'.git', '.svn'};\nall = path;\n[entries] = regexp(all, '([^:]+):', 'tokens');\nfor i = 1:length(entries)\n    entry = char(entries{i});\n    for j=1:length(pattern),\n         if (~isempty(strfind(entry, pattern{j})))\n             rmpath(entry);\n         end;\n    end\nend;\nclear all pattern entry entries;\n\n\nsavepath(cself)\nclear self cself snewer\nend %~isdeployed\n","old_contents":"if ~isdeployed,\n\n%------------ FreeSurfer -----------------------------%\nfshome = getenv('FREESURFER_HOME');\nfsmatlab = sprintf('%s\/matlab',fshome);\nif (exist(fsmatlab) == 7)\n    path(path,fsmatlab);\nend\nclear fshome fsmatlab;\n%-----------------------------------------------------%\n\n%------------ FreeSurfer FAST ------------------------%\nfsfasthome = getenv('FSFAST_HOME');\nfsfasttoolbox = sprintf('%s\/toolbox',fsfasthome);\nif (exist(fsfasttoolbox) == 7)\n    path(path,fsfasttoolbox);\nend\nclear fsfasthome fsfasttoolbox;\n%-----------------------------------------------------%\n\nuser=getenv('USER'),\nnode=getenv('HOSTNAME'),\n%if strcmp(user, 'xst833'),\n    home = getenv('HOME');\n%else\n%    home = '\/home\/xst833\/';\n%end\n\nfmriTools={\n'fmri\/afni.matlab';\n'fmri\/bct.20121204';\n'fmri\/nbs1.2';\n'gretna';\n% 'spm12';\n% 'spm12\/toolbox\/cat12';\n'spm8';\n'spm8\/toolbox\/vbm8';\n'surfstat';\n'panda\/PANDA';\n'matlab\/gift\/GroupICATv4.0a\/icatb';\n'matlab\/rest\/REST';\n'matlab\/mlsp';\n'matlab\/m2thml';\n'matlab\/BrainNetViewer';\n'matlab\/eig3';\n'matlab\/export_fig';\n'matlab\/ite\/code';\n'matlab\/jsonlab';\n'matlab\/MIToolbox';\n};\nfor i=1:size(fmriTools, 1),\n    dir=sprintf(['%s\/' fmriTools{i}], home);\n    if exist(dir, 'dir'),\n        addpath(genpath(dir));\n        fprintf(2, sprintf('# Added path: %s\\n', dir));\n    else\n        fprintf(2, sprintf('## Cannot find dir: %s\\n', dir));\n    end\nend\n\n%add my bin path\ndawnbind= getenv('DAWNBIND');\naddpath(genpath(dawnbind));\nclear home fmriTools;\n\nfprintf(2, sprintf('#Cleaning .git .svn dirs\\n'));\n%function filter_path(pattern)\npattern={'.git', '.svn'};\nall = path;\n[entries] = regexp(all, '([^:]+):', 'tokens');\nfor i = 1:length(entries)\n    entry = char(entries{i});\n    for j=1:length(pattern),\n         if (~isempty(strfind(entry, pattern{j})))\n             rmpath(entry);\n         end;\n    end\nend;\nclear all pattern entry entries;\n\nend %~isdeployed\n","returncode":0,"stderr":"","license":"apache-2.0","lang":"Matlab"}
{"commit":"e7a402320fdae488a1b1c5b0520778c19c41d1d0","subject":"add Peng Hanchuan's Information estimation toolbox","message":"add Peng Hanchuan's Information estimation toolbox\n","repos":"dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim","old_file":"fmri.matlab","new_file":"fmri.matlab","new_contents":"if ~isdeployed,\n\n%------------ FreeSurfer -----------------------------%\nfshome = getenv('FREESURFER_HOME');\nfsmatlab = sprintf('%s\/matlab',fshome);\nif (exist(fsmatlab) == 7)\n    path(path,fsmatlab);\nend\nclear fshome fsmatlab;\n%-----------------------------------------------------%\n\n%------------ FreeSurfer FAST ------------------------%\nfsfasthome = getenv('FSFAST_HOME');\nfsfasttoolbox = sprintf('%s\/toolbox',fsfasthome);\nif (exist(fsfasttoolbox) == 7)\n    path(path,fsfasttoolbox);\nend\nclear fsfasthome fsfasttoolbox;\n%-----------------------------------------------------%\n\nuser=getenv('USER'),\nnode=getenv('HOSTNAME'),\nif strcmp(user, 'xst833'),\n    home = getenv('HOME');\nelse\n    home = '\/home\/xst833\/';\nend\n\naddpath(genpath(sprintf('%s\/fmri\/afni.matlab\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/bct.20121204\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/nbs1.2\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/gretna\/',home)));\n%addpath((sprintf('%s\/fmri\/spm12\/',home)));\n%addpath((sprintf('%s\/fmri\/spm12\/toolbox\/cat12',home)));\naddpath((sprintf('%s\/fmri\/spm8\/',home)));\naddpath((sprintf('%s\/fmri\/spm8\/toolbox\/vbm8',home)));\naddpath(genpath(sprintf('%s\/fmri\/surfstat\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/panda\/PANDA\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/matlab\/gift\/GroupICATv4.0a\/icatb',home)));\naddpath(genpath(sprintf('%s\/fmri\/matlab\/rest\/REST\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/matlab\/mlsp\/',home)));\naddpath((sprintf('%s\/fmri\/matlab\/m2html\/',home)));\naddpath((sprintf('%s\/fmri\/matlab\/BrainNetViewer\/',home)));\naddpath((sprintf('%s\/fmri\/matlab\/eig3\/',home)));\naddpath((sprintf('%s\/fmri\/matlab\/export_fig\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/matlab\/ite\/code', home)));\naddpath(sprintf('%s\/fmri\/matlab\/jsonlab', home));\naddpath(genpath(sprintf('%s\/fmri\/matlab\/PengHC-MIToolbox-2.1.2', home)));\n\n%add my bin path\ndawnbind= getenv('DAWNBIND');\naddpath(genpath(dawnbind));\nclear home;\n\n%function filter_path(pattern)\npattern={'.git', '.svn'};\nall = path;\n[entries] = regexp(all, '([^:]+):', 'tokens');\nfor i = 1:length(entries)\n    entry = char(entries{i});\n    for j=1:length(pattern),\n         if (~isempty(strfind(entry, pattern{j})))\n             rmpath(entry);\n         end;\n    end\nend;\nclear all pattern entry entries;\n\nend %~isdeployed\n","old_contents":"if ~isdeployed,\n\n%------------ FreeSurfer -----------------------------%\nfshome = getenv('FREESURFER_HOME');\nfsmatlab = sprintf('%s\/matlab',fshome);\nif (exist(fsmatlab) == 7)\n    path(path,fsmatlab);\nend\nclear fshome fsmatlab;\n%-----------------------------------------------------%\n\n%------------ FreeSurfer FAST ------------------------%\nfsfasthome = getenv('FSFAST_HOME');\nfsfasttoolbox = sprintf('%s\/toolbox',fsfasthome);\nif (exist(fsfasttoolbox) == 7)\n    path(path,fsfasttoolbox);\nend\nclear fsfasthome fsfasttoolbox;\n%-----------------------------------------------------%\n\nuser=getenv('USER'),\nnode=getenv('HOSTNAME'),\nif strcmp(user, 'xst833'),\n    home = getenv('HOME');\nelse\n    home = '\/home\/xst833\/';\nend\n\naddpath(genpath(sprintf('%s\/fmri\/afni.matlab\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/bct.20121204\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/nbs1.2\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/gretna\/',home)));\n%addpath((sprintf('%s\/fmri\/spm12\/',home)));\n%addpath((sprintf('%s\/fmri\/spm12\/toolbox\/cat12',home)));\naddpath((sprintf('%s\/fmri\/spm8\/',home)));\naddpath((sprintf('%s\/fmri\/spm8\/toolbox\/vbm8',home)));\naddpath(genpath(sprintf('%s\/fmri\/surfstat\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/panda\/PANDA\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/matlab\/gift\/GroupICATv4.0a\/icatb',home)));\naddpath(genpath(sprintf('%s\/fmri\/matlab\/rest\/REST\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/matlab\/mlsp\/',home)));\naddpath((sprintf('%s\/fmri\/matlab\/m2html\/',home)));\naddpath((sprintf('%s\/fmri\/matlab\/BrainNetViewer\/',home)));\naddpath((sprintf('%s\/fmri\/matlab\/eig3\/',home)));\naddpath((sprintf('%s\/fmri\/matlab\/export_fig\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/matlab\/ite\/code', home)));\naddpath(sprintf('%s\/fmri\/matlab\/jsonlab', home));\n\n%add my bin path\ndawnbind= getenv('DAWNBIND');\naddpath(genpath(dawnbind));\nclear home;\n\n%function filter_path(pattern)\npattern={'.git', '.svn'};\nall = path;\n[entries] = regexp(all, '([^:]+):', 'tokens');\nfor i = 1:length(entries)\n    entry = char(entries{i});\n    for j=1:length(pattern),\n         if (~isempty(strfind(entry, pattern{j})))\n             rmpath(entry);\n         end;\n    end\nend;\nclear all pattern entry entries;\n\nend %~isdeployed\n","returncode":0,"stderr":"","license":"apache-2.0","lang":"Matlab"}
{"commit":"768e608eb02c76098b959243f116464efacee80c","subject":"add jsonlab into path","message":"add jsonlab into path\n","repos":"dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim","old_file":"fmri.matlab","new_file":"fmri.matlab","new_contents":"if ~isdeployed,\n\n%------------ FreeSurfer -----------------------------%\nfshome = getenv('FREESURFER_HOME');\nfsmatlab = sprintf('%s\/matlab',fshome);\nif (exist(fsmatlab) == 7)\n    path(path,fsmatlab);\nend\nclear fshome fsmatlab;\n%-----------------------------------------------------%\n\n%------------ FreeSurfer FAST ------------------------%\nfsfasthome = getenv('FSFAST_HOME');\nfsfasttoolbox = sprintf('%s\/toolbox',fsfasthome);\nif (exist(fsfasttoolbox) == 7)\n    path(path,fsfasttoolbox);\nend\nclear fsfasthome fsfasttoolbox;\n%-----------------------------------------------------%\n\nuser=getenv('USER'),\nnode=getenv('HOSTNAME'),\nif strcmp(user, 'xst833'),\n    home = getenv('HOME');\nelse\n    home = '\/home\/xst833\/';\nend\n\naddpath(genpath(sprintf('%s\/fmri\/afni.matlab\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/bct.20121204\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/nbs1.2\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/gretna\/',home)));\naddpath((sprintf('%s\/fmri\/spm8\/',home)));\naddpath((sprintf('%s\/fmri\/spm8\/toolbox\/vbm8',home)));\naddpath(genpath(sprintf('%s\/fmri\/surfstat\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/panda\/PANDA\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/matlab\/gift\/GroupICATv4.0a\/icatb',home)));\naddpath(genpath(sprintf('%s\/fmri\/matlab\/rest\/REST\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/matlab\/mlsp\/',home)));\naddpath((sprintf('%s\/fmri\/matlab\/m2html\/',home)));\naddpath((sprintf('%s\/fmri\/matlab\/BrainNetViewer\/',home)));\naddpath((sprintf('%s\/fmri\/matlab\/eig3\/',home)));\naddpath((sprintf('%s\/fmri\/matlab\/export_fig\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/matlab\/ite\/code', home)));\naddpath(sprintf('%s\/fmri\/matlab\/jsonlab', home));\n\n%add my bin path\ndawnbind= getenv('DAWNBIND');\naddpath(genpath(dawnbind));\nclear home;\n\n%function filter_path(pattern)\npattern={'.git', '.svn'};\nall = path;\n[entries] = regexp(all, '([^:]+):', 'tokens');\nfor i = 1:length(entries)\n    entry = char(entries{i});\n    for j=1:length(pattern),\n         if (~isempty(strfind(entry, pattern{j})))\n             rmpath(entry);\n         end;\n    end\nend;\nclear all pattern entry entries;\n\nend %~isdeployed\n","old_contents":"if ~isdeployed,\n\n%------------ FreeSurfer -----------------------------%\nfshome = getenv('FREESURFER_HOME');\nfsmatlab = sprintf('%s\/matlab',fshome);\nif (exist(fsmatlab) == 7)\n    path(path,fsmatlab);\nend\nclear fshome fsmatlab;\n%-----------------------------------------------------%\n\n%------------ FreeSurfer FAST ------------------------%\nfsfasthome = getenv('FSFAST_HOME');\nfsfasttoolbox = sprintf('%s\/toolbox',fsfasthome);\nif (exist(fsfasttoolbox) == 7)\n    path(path,fsfasttoolbox);\nend\nclear fsfasthome fsfasttoolbox;\n%-----------------------------------------------------%\n\nuser=getenv('USER'),\nnode=getenv('HOSTNAME'),\nif strcmp(user, 'xst833'),\n    home = getenv('HOME');\nelse\n    home = '\/home\/xst833\/';\nend\n\naddpath(genpath(sprintf('%s\/fmri\/afni.matlab\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/bct.20121204\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/nbs1.2\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/gretna\/',home)));\naddpath((sprintf('%s\/fmri\/spm8\/',home)));\naddpath((sprintf('%s\/fmri\/spm8\/toolbox\/vbm8',home)));\naddpath(genpath(sprintf('%s\/fmri\/surfstat\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/panda\/PANDA\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/matlab\/gift\/GroupICATv3.0a\/icatb',home)));\naddpath(genpath(sprintf('%s\/fmri\/matlab\/rest\/REST\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/matlab\/mlsp\/',home)));\naddpath((sprintf('%s\/fmri\/matlab\/m2html\/',home)));\naddpath((sprintf('%s\/fmri\/matlab\/BrainNetViewer\/',home)));\naddpath((sprintf('%s\/fmri\/matlab\/eig3\/',home)));\naddpath((sprintf('%s\/fmri\/matlab\/export_fig\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/matlab\/ite\/code', home)));\n\n%add my bin path\ndawnbind= getenv('DAWNBIND');\naddpath(genpath(dawnbind));\nclear home;\n\n%function filter_path(pattern)\npattern={'.git', '.svn'};\nall = path;\n[entries] = regexp(all, '([^:]+):', 'tokens');\nfor i = 1:length(entries)\n    entry = char(entries{i});\n    for j=1:length(pattern),\n         if (~isempty(strfind(entry, pattern{j})))\n             rmpath(entry);\n         end;\n    end\nend;\nclear all pattern entry entries;\n\nend %~isdeployed\n","returncode":0,"stderr":"","license":"apache-2.0","lang":"Matlab"}
{"commit":"c043cb5d1524b02813c87ecdf927f69ace794cf3","subject":"filter .git path in matlab startup","message":"filter .git path in matlab startup\n","repos":"dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim","old_file":"fmri.matlab","new_file":"fmri.matlab","new_contents":"%------------ FreeSurfer -----------------------------%\nfshome = getenv('FREESURFER_HOME');\nfsmatlab = sprintf('%s\/matlab',fshome);\nif (exist(fsmatlab) == 7)\n    path(path,fsmatlab);\nend\nclear fshome fsmatlab;\n%-----------------------------------------------------%\n\n%------------ FreeSurfer FAST ------------------------%\nfsfasthome = getenv('FSFAST_HOME');\nfsfasttoolbox = sprintf('%s\/toolbox',fsfasthome);\nif (exist(fsfasttoolbox) == 7)\n    path(path,fsfasttoolbox);\nend\nclear fsfasthome fsfasttoolbox;\n%-----------------------------------------------------%\n\nhome = getenv('HOME');\naddpath(genpath(sprintf('%s\/fmri\/afni.matlab\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/bct.20121204\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/nbs1.2\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/gretna\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/spm8\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/surfstat\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/panda\/PANDA\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/matlab\/gift\/GroupICATv3.0a\/icatb',home)));\naddpath(genpath(sprintf('%s\/fmri\/matlab\/rest\/REST\/',home)));\nclear home;\n\n%function filter_path(pattern)\npattern='.git';\nall = path;\n[entries] = regexp(all, '([^:]+):', 'tokens');\nfor i = 1:length(entries)\n     entry = char(entries{i});\n     if (~isempty(strfind(entry, pattern)))\n         rmpath(entry);\n     end;\nend;\n\n","old_contents":"%------------ FreeSurfer -----------------------------%\nfshome = getenv('FREESURFER_HOME');\nfsmatlab = sprintf('%s\/matlab',fshome);\nif (exist(fsmatlab) == 7)\n    path(path,fsmatlab);\nend\nclear fshome fsmatlab;\n%-----------------------------------------------------%\n\n%------------ FreeSurfer FAST ------------------------%\nfsfasthome = getenv('FSFAST_HOME');\nfsfasttoolbox = sprintf('%s\/toolbox',fsfasthome);\nif (exist(fsfasttoolbox) == 7)\n    path(path,fsfasttoolbox);\nend\nclear fsfasthome fsfasttoolbox;\n%-----------------------------------------------------%\n\nhome = getenv('HOME');\naddpath(genpath(sprintf('%s\/fmri\/afni.matlab\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/bct.20121204\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/nbs1.2\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/gretna\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/spm8\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/surfstat\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/panda\/PANDA\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/matlab\/gift\/GroupICATv3.0a\/icatb',home)));\nclear home;\n","returncode":0,"stderr":"","license":"apache-2.0","lang":"Matlab"}
{"commit":"7047dd398631bc282957b62f35a3569fdf5c4011","subject":"cleaner way to define my toolboxes for Matlab to startup","message":"cleaner way to define my toolboxes for Matlab to startup\n","repos":"dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim","old_file":"fmri.matlab","new_file":"fmri.matlab","new_contents":"if ~isdeployed,\n\n%------------ FreeSurfer -----------------------------%\nfshome = getenv('FREESURFER_HOME');\nfsmatlab = sprintf('%s\/matlab',fshome);\nif (exist(fsmatlab) == 7)\n    path(path,fsmatlab);\nend\nclear fshome fsmatlab;\n%-----------------------------------------------------%\n\n%------------ FreeSurfer FAST ------------------------%\nfsfasthome = getenv('FSFAST_HOME');\nfsfasttoolbox = sprintf('%s\/toolbox',fsfasthome);\nif (exist(fsfasttoolbox) == 7)\n    path(path,fsfasttoolbox);\nend\nclear fsfasthome fsfasttoolbox;\n%-----------------------------------------------------%\n\nuser=getenv('USER'),\nnode=getenv('HOSTNAME'),\n%if strcmp(user, 'xst833'),\n    home = getenv('HOME');\n%else\n%    home = '\/home\/xst833\/';\n%end\n\nfmriTools={\n'fmri\/afni.matlab';\n'fmri\/bct.20121204';\n'fmri\/nbs1.2';\n'gretna';\n% 'spm12';\n% 'spm12\/toolbox\/cat12';\n'spm8';\n'spm8\/toolbox\/vbm8';\n'surfstat';\n'panda\/PANDA';\n'matlab\/gift\/GroupICATv4.0a\/icatb';\n'matlab\/rest\/REST';\n'matlab\/mlsp';\n'matlab\/m2thml';\n'matlab\/BrainNetViewer';\n'matlab\/eig3';\n'matlab\/export_fig';\n'matlab\/ite\/code';\n'matlab\/jsonlab';\n'matlab\/MIToolbox';\n};\nfor i=1:size(fmriTools, 1),\n    dir=sprintf(['%s\/' fmriTools{i}], home);\n    if exist(dir, 'dir'),\n        addpath(genpath(dir));\n        fprintf(2, sprintf('# Added path: %s\\n', dir));\n    else\n        fprintf(2, sprintf('## Cannot find dir: %s\\n', dir));\n    end\nend\n\n%add my bin path\ndawnbind= getenv('DAWNBIND');\naddpath(genpath(dawnbind));\nclear home fmriTools;\n\nfprintf(2, sprintf('#Cleaning .git .svn dirs\\n'));\n%function filter_path(pattern)\npattern={'.git', '.svn'};\nall = path;\n[entries] = regexp(all, '([^:]+):', 'tokens');\nfor i = 1:length(entries)\n    entry = char(entries{i});\n    for j=1:length(pattern),\n         if (~isempty(strfind(entry, pattern{j})))\n             rmpath(entry);\n         end;\n    end\nend;\nclear all pattern entry entries;\n\nend %~isdeployed\n","old_contents":"if ~isdeployed,\n\n%------------ FreeSurfer -----------------------------%\nfshome = getenv('FREESURFER_HOME');\nfsmatlab = sprintf('%s\/matlab',fshome);\nif (exist(fsmatlab) == 7)\n    path(path,fsmatlab);\nend\nclear fshome fsmatlab;\n%-----------------------------------------------------%\n\n%------------ FreeSurfer FAST ------------------------%\nfsfasthome = getenv('FSFAST_HOME');\nfsfasttoolbox = sprintf('%s\/toolbox',fsfasthome);\nif (exist(fsfasttoolbox) == 7)\n    path(path,fsfasttoolbox);\nend\nclear fsfasthome fsfasttoolbox;\n%-----------------------------------------------------%\n\nuser=getenv('USER'),\nnode=getenv('HOSTNAME'),\n%if strcmp(user, 'xst833'),\n    home = getenv('HOME');\n%else\n%    home = '\/home\/xst833\/';\n%end\n\naddpath(genpath(sprintf('%s\/fmri\/afni.matlab\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/bct.20121204\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/nbs1.2\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/gretna\/',home)));\n%addpath((sprintf('%s\/fmri\/spm12\/',home)));\n%addpath((sprintf('%s\/fmri\/spm12\/toolbox\/cat12',home)));\naddpath((sprintf('%s\/fmri\/spm8\/',home)));\naddpath((sprintf('%s\/fmri\/spm8\/toolbox\/vbm8',home)));\naddpath(genpath(sprintf('%s\/fmri\/surfstat\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/panda\/PANDA\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/matlab\/gift\/GroupICATv4.0a\/icatb',home)));\naddpath(genpath(sprintf('%s\/fmri\/matlab\/rest\/REST\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/matlab\/mlsp\/',home)));\naddpath((sprintf('%s\/fmri\/matlab\/m2html\/',home)));\naddpath((sprintf('%s\/fmri\/matlab\/BrainNetViewer\/',home)));\naddpath((sprintf('%s\/fmri\/matlab\/eig3\/',home)));\naddpath((sprintf('%s\/fmri\/matlab\/export_fig\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/matlab\/ite\/code', home)));\naddpath(sprintf('%s\/fmri\/matlab\/jsonlab', home));\naddpath(genpath(sprintf('%s\/fmri\/matlab\/MIToolbox', home)));\n\n%add my bin path\ndawnbind= getenv('DAWNBIND');\naddpath(genpath(dawnbind));\nclear home;\n\n%function filter_path(pattern)\npattern={'.git', '.svn'};\nall = path;\n[entries] = regexp(all, '([^:]+):', 'tokens');\nfor i = 1:length(entries)\n    entry = char(entries{i});\n    for j=1:length(pattern),\n         if (~isempty(strfind(entry, pattern{j})))\n             rmpath(entry);\n         end;\n    end\nend;\nclear all pattern entry entries;\n\nend %~isdeployed\n","returncode":0,"stderr":"","license":"apache-2.0","lang":"Matlab"}
{"commit":"371d52b9b6ade7ebd6c382d7c781414705365025","subject":"Removing another reference version.  I think this is the last of them.","message":"Removing another reference version.  I think this is the last of them.\n\n\n\ngit-svn-id: 88467cb1fb04b8a755be7e1ee1026be4190196ef@22435 3a8e244f-b0f2-452b-bcba-4c88e055c3ca\n","repos":"chizarlicious\/chapel,hildeth\/chapel,CoryMcCartan\/chapel,CoryMcCartan\/chapel,sungeunchoi\/chapel,CoryMcCartan\/chapel,hildeth\/chapel,hildeth\/chapel,chizarlicious\/chapel,chizarlicious\/chapel,hildeth\/chapel,CoryMcCartan\/chapel,chizarlicious\/chapel,sungeunchoi\/chapel,sungeunchoi\/chapel,sungeunchoi\/chapel,hildeth\/chapel,hildeth\/chapel,sungeunchoi\/chapel,hildeth\/chapel,chizarlicious\/chapel,chizarlicious\/chapel,CoryMcCartan\/chapel,sungeunchoi\/chapel,CoryMcCartan\/chapel,CoryMcCartan\/chapel,sungeunchoi\/chapel,sungeunchoi\/chapel,chizarlicious\/chapel","old_file":"test\/studies\/lu\/dongarra.matlab","new_file":"test\/studies\/lu\/dongarra.matlab","new_contents":"","old_contents":"function [L,U,p] = lutx(A)\n%LUTX  Triangular factorization, textbook version\n%   [L,U,p] = lutx(A) produces a unit lower triangular matrix L,\n%   an upper triangular matrix U, and a permutation vector p,\n%   so that L*U = A(p,:)\n\n[n,n] = size(A);\np = (1:n)';\n\nfor k = 1:n-1\n\n   % Find index of largest element below diagonal in k-th column\n   [r,m] = max(abs(A(k:n,k)));\n   m = m+k-1;\n\n   % Skip elimination if column is zero\n   if (A(m,k) ~= 0)\n   \n      % Swap pivot row\n      if (m ~= k)\n         A([k m],:) = A([m k],:);\n         p([k m]) = p([m k]);\n      end\n\n      % Compute multipliers\n      i = k+1:n;\n      A(i,k) = A(i,k)\/A(k,k);\n\n      % Update the remainder of the matrix\n      j = k+1:n;\n      A(i,j) = A(i,j) - A(i,k)*A(k,j); \n   end\nend\n\n% Separate result\nL = tril(A,-1) + eye(n,n);\nU = triu(A);\n","returncode":0,"stderr":"","license":"apache-2.0","lang":"Matlab"}
{"commit":"237eae6316e840d94c382d0bce88a2f841ea3629","subject":"use my own forked MIToolbox","message":"use my own forked MIToolbox\n","repos":"dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim","old_file":"fmri.matlab","new_file":"fmri.matlab","new_contents":"if ~isdeployed,\n\n%------------ FreeSurfer -----------------------------%\nfshome = getenv('FREESURFER_HOME');\nfsmatlab = sprintf('%s\/matlab',fshome);\nif (exist(fsmatlab) == 7)\n    path(path,fsmatlab);\nend\nclear fshome fsmatlab;\n%-----------------------------------------------------%\n\n%------------ FreeSurfer FAST ------------------------%\nfsfasthome = getenv('FSFAST_HOME');\nfsfasttoolbox = sprintf('%s\/toolbox',fsfasthome);\nif (exist(fsfasttoolbox) == 7)\n    path(path,fsfasttoolbox);\nend\nclear fsfasthome fsfasttoolbox;\n%-----------------------------------------------------%\n\nuser=getenv('USER'),\nnode=getenv('HOSTNAME'),\nif strcmp(user, 'xst833'),\n    home = getenv('HOME');\nelse\n    home = '\/home\/xst833\/';\nend\n\naddpath(genpath(sprintf('%s\/fmri\/afni.matlab\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/bct.20121204\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/nbs1.2\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/gretna\/',home)));\n%addpath((sprintf('%s\/fmri\/spm12\/',home)));\n%addpath((sprintf('%s\/fmri\/spm12\/toolbox\/cat12',home)));\naddpath((sprintf('%s\/fmri\/spm8\/',home)));\naddpath((sprintf('%s\/fmri\/spm8\/toolbox\/vbm8',home)));\naddpath(genpath(sprintf('%s\/fmri\/surfstat\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/panda\/PANDA\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/matlab\/gift\/GroupICATv4.0a\/icatb',home)));\naddpath(genpath(sprintf('%s\/fmri\/matlab\/rest\/REST\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/matlab\/mlsp\/',home)));\naddpath((sprintf('%s\/fmri\/matlab\/m2html\/',home)));\naddpath((sprintf('%s\/fmri\/matlab\/BrainNetViewer\/',home)));\naddpath((sprintf('%s\/fmri\/matlab\/eig3\/',home)));\naddpath((sprintf('%s\/fmri\/matlab\/export_fig\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/matlab\/ite\/code', home)));\naddpath(sprintf('%s\/fmri\/matlab\/jsonlab', home));\naddpath(genpath(sprintf('%s\/fmri\/matlab\/MIToolbox', home)));\n\n%add my bin path\ndawnbind= getenv('DAWNBIND');\naddpath(genpath(dawnbind));\nclear home;\n\n%function filter_path(pattern)\npattern={'.git', '.svn'};\nall = path;\n[entries] = regexp(all, '([^:]+):', 'tokens');\nfor i = 1:length(entries)\n    entry = char(entries{i});\n    for j=1:length(pattern),\n         if (~isempty(strfind(entry, pattern{j})))\n             rmpath(entry);\n         end;\n    end\nend;\nclear all pattern entry entries;\n\nend %~isdeployed\n","old_contents":"if ~isdeployed,\n\n%------------ FreeSurfer -----------------------------%\nfshome = getenv('FREESURFER_HOME');\nfsmatlab = sprintf('%s\/matlab',fshome);\nif (exist(fsmatlab) == 7)\n    path(path,fsmatlab);\nend\nclear fshome fsmatlab;\n%-----------------------------------------------------%\n\n%------------ FreeSurfer FAST ------------------------%\nfsfasthome = getenv('FSFAST_HOME');\nfsfasttoolbox = sprintf('%s\/toolbox',fsfasthome);\nif (exist(fsfasttoolbox) == 7)\n    path(path,fsfasttoolbox);\nend\nclear fsfasthome fsfasttoolbox;\n%-----------------------------------------------------%\n\nuser=getenv('USER'),\nnode=getenv('HOSTNAME'),\nif strcmp(user, 'xst833'),\n    home = getenv('HOME');\nelse\n    home = '\/home\/xst833\/';\nend\n\naddpath(genpath(sprintf('%s\/fmri\/afni.matlab\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/bct.20121204\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/nbs1.2\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/gretna\/',home)));\n%addpath((sprintf('%s\/fmri\/spm12\/',home)));\n%addpath((sprintf('%s\/fmri\/spm12\/toolbox\/cat12',home)));\naddpath((sprintf('%s\/fmri\/spm8\/',home)));\naddpath((sprintf('%s\/fmri\/spm8\/toolbox\/vbm8',home)));\naddpath(genpath(sprintf('%s\/fmri\/surfstat\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/panda\/PANDA\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/matlab\/gift\/GroupICATv4.0a\/icatb',home)));\naddpath(genpath(sprintf('%s\/fmri\/matlab\/rest\/REST\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/matlab\/mlsp\/',home)));\naddpath((sprintf('%s\/fmri\/matlab\/m2html\/',home)));\naddpath((sprintf('%s\/fmri\/matlab\/BrainNetViewer\/',home)));\naddpath((sprintf('%s\/fmri\/matlab\/eig3\/',home)));\naddpath((sprintf('%s\/fmri\/matlab\/export_fig\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/matlab\/ite\/code', home)));\naddpath(sprintf('%s\/fmri\/matlab\/jsonlab', home));\naddpath(genpath(sprintf('%s\/fmri\/matlab\/PengHC-MIToolbox-2.1.2', home)));\n\n%add my bin path\ndawnbind= getenv('DAWNBIND');\naddpath(genpath(dawnbind));\nclear home;\n\n%function filter_path(pattern)\npattern={'.git', '.svn'};\nall = path;\n[entries] = regexp(all, '([^:]+):', 'tokens');\nfor i = 1:length(entries)\n    entry = char(entries{i});\n    for j=1:length(pattern),\n         if (~isempty(strfind(entry, pattern{j})))\n             rmpath(entry);\n         end;\n    end\nend;\nclear all pattern entry entries;\n\nend %~isdeployed\n","returncode":0,"stderr":"","license":"apache-2.0","lang":"Matlab"}
{"commit":"d4595084e118525d7ee541f0d8de551cdfcc2c7f","subject":"fix wrong merge and wrong fmri path for SPM8","message":"fix wrong merge and wrong fmri path for SPM8\n","repos":"dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim","old_file":"fmri.matlab","new_file":"fmri.matlab","new_contents":"if ~isdeployed,\n\nself=mfilename;\ncself=[mfilename('fullpath'), '_cache.m'];\n[~, snewer]=system(['test ', cself, ' -nt ', self ' && echo 1 || echo 0']);\nif 1==str2num(snewer), %if cache is newer than me\n    fprintf(2, 'Loading cached startup path: %s\\n', cself);\n    %load cache\n    pd=pwd;  path=fileparts(cself);\n    cd(path); path=startup_cache; addpath(path);  cd(pd);\n    clear self snewer cself pd path\n    return\nend %if cself does not exist, it is Ok, system will think it fails to be newer!\n\n%------------ FreeSurfer -----------------------------%\nfshome = getenv('FREESURFER_HOME');\nfsmatlab = sprintf('%s\/matlab',fshome);\nif (exist(fsmatlab) == 7)\n    path(path,fsmatlab);\nend\nclear fshome fsmatlab;\n%-----------------------------------------------------%\n\n%------------ FreeSurfer FAST ------------------------%\nfsfasthome = getenv('FSFAST_HOME');\nfsfasttoolbox = sprintf('%s\/toolbox',fsfasthome);\nif (exist(fsfasttoolbox) == 7)\n    path(path,fsfasttoolbox);\nend\nclear fsfasthome fsfasttoolbox;\n%-----------------------------------------------------%\n\nuser=getenv('USER'),\nnode=getenv('HOSTNAME'),\n%if strcmp(user, 'xst833'),\n    home = getenv('HOME');\n%else\n%    home = '\/home\/xst833\/';\n%end\n\nfmriTools={\n'fmri\/afni.matlab';\n'fmri\/bct.20121204';\n'fmri\/nbs1.2';\n'fmri\/gretna';\n% 'spm12';\n% 'spm12\/toolbox\/cat12';\n'fmri\/spm8';\n'fmri\/spm8\/toolbox\/vbm8';\n'fmri\/surfstat';\n'fmri\/panda\/PANDA';\n'matlab\/gift\/GroupICATv4.0a\/icatb';\n'matlab\/rest\/REST';\n'matlab\/mlsp';\n'matlab\/m2thml';\n'matlab\/BrainNetViewer';\n'matlab\/eig3';\n'matlab\/export_fig';\n'matlab\/ite\/code';\n'matlab\/jsonlab';\n%'matlab\/MIToolbox';\n};\nfor i=1:size(fmriTools, 1),\n    dir=sprintf(['%s\/' fmriTools{i}], home);\n    if exist(dir, 'dir'),\n        addpath(genpath(dir));\n        fprintf(2, sprintf('# Added path: %s\\n', dir));\n    else\n        fprintf(2, sprintf('## Cannot find dir: %s\\n', dir));\n    end\nend\n\n%add my bin path\ndawnbind= getenv('DAWNBIND');\naddpath(genpath(dawnbind));\nclear home fmriTools;\n\nfprintf(2, sprintf('#Cleaning .git .svn dirs\\n'));\n%function filter_path(pattern)\npattern={'.git', '.svn'};\nall = path;\n[entries] = regexp(all, '([^:]+):', 'tokens');\nfor i = 1:length(entries)\n    entry = char(entries{i});\n    for j=1:length(pattern),\n         if (~isempty(strfind(entry, pattern{j})))\n             rmpath(entry);\n         end;\n    end\nend;\nclear all pattern entry entries;\n\n\nsavepath(cself)\nclear self cself snewer\nend %~isdeployed\n","old_contents":"if ~isdeployed,\n\nself=mfilename;\ncself=[mfilename('fullpath'), '_cache.m'];\n[~, snewer]=system(['test ', cself, ' -nt ', self ' && echo 1 || echo 0']);\nif 1==str2num(snewer), %if cache is newer than me\n    fprintf(2, 'Loading cached startup path: %s\\n', cself);\n    %load cache\n    pd=pwd;  path=fileparts(cself);\n    cd(path); path=startup_cache; addpath(path);  cd(pd);\n    clear self snewer cself pd path\n    return\nend %if cself does not exist, it is Ok, system will think it fails to be newer!\n\n%------------ FreeSurfer -----------------------------%\nfshome = getenv('FREESURFER_HOME');\nfsmatlab = sprintf('%s\/matlab',fshome);\nif (exist(fsmatlab) == 7)\n    path(path,fsmatlab);\nend\nclear fshome fsmatlab;\n%-----------------------------------------------------%\n\n%------------ FreeSurfer FAST ------------------------%\nfsfasthome = getenv('FSFAST_HOME');\nfsfasttoolbox = sprintf('%s\/toolbox',fsfasthome);\nif (exist(fsfasttoolbox) == 7)\n    path(path,fsfasttoolbox);\nend\nclear fsfasthome fsfasttoolbox;\n%-----------------------------------------------------%\n\nuser=getenv('USER'),\nnode=getenv('HOSTNAME'),\n%if strcmp(user, 'xst833'),\n    home = getenv('HOME');\n%else\n%    home = '\/home\/xst833\/';\n%end\n\nfmriTools={\n'fmri\/afni.matlab';\n'fmri\/bct.20121204';\n'fmri\/nbs1.2';\n'gretna';\n% 'spm12';\n% 'spm12\/toolbox\/cat12';\n'spm8';\n'spm8\/toolbox\/vbm8';\n'surfstat';\n'panda\/PANDA';\n'matlab\/gift\/GroupICATv4.0a\/icatb';\n'matlab\/rest\/REST';\n'matlab\/mlsp';\n'matlab\/m2thml';\n'matlab\/BrainNetViewer';\n'matlab\/eig3';\n'matlab\/export_fig';\n'matlab\/ite\/code';\n'matlab\/jsonlab';\n%'matlab\/MIToolbox';\n};\nfor i=1:size(fmriTools, 1),\n    dir=sprintf(['%s\/' fmriTools{i}], home);\n    if exist(dir, 'dir'),\n        addpath(genpath(dir));\n        fprintf(2, sprintf('# Added path: %s\\n', dir));\n    else\n        fprintf(2, sprintf('## Cannot find dir: %s\\n', dir));\n    end\nend\n\n%add my bin path\ndawnbind= getenv('DAWNBIND');\naddpath(genpath(dawnbind));\nclear home fmriTools;\n\nfprintf(2, sprintf('#Cleaning .git .svn dirs\\n'));\n%function filter_path(pattern)\npattern={'.git', '.svn'};\nall = path;\n[entries] = regexp(all, '([^:]+):', 'tokens');\nfor i = 1:length(entries)\n    entry = char(entries{i});\n    for j=1:length(pattern),\n         if (~isempty(strfind(entry, pattern{j})))\n             rmpath(entry);\n         end;\n    end\nend;\nclear all pattern entry entries;\n\n\nsavepath(cself)\nclear self cself snewer\nend %~isdeployed\n","returncode":0,"stderr":"","license":"apache-2.0","lang":"Matlab"}
{"commit":"c75ad72fbbf0f1c41afd99e58a220ecff2624cd7","subject":"reminded save","message":"reminded save\n","repos":"dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim","old_file":"fmri.matlab","new_file":"fmri.matlab","new_contents":"%------------ FreeSurfer -----------------------------%\nfshome = getenv('FREESURFER_HOME');\nfsmatlab = sprintf('%s\/matlab',fshome);\nif (exist(fsmatlab) == 7)\n    path(path,fsmatlab);\nend\nclear fshome fsmatlab;\n%-----------------------------------------------------%\n\n%------------ FreeSurfer FAST ------------------------%\nfsfasthome = getenv('FSFAST_HOME');\nfsfasttoolbox = sprintf('%s\/toolbox',fsfasthome);\nif (exist(fsfasttoolbox) == 7)\n    path(path,fsfasttoolbox);\nend\nclear fsfasthome fsfasttoolbox;\n%-----------------------------------------------------%\n\nhome = getenv('HOME');\naddpath(genpath(sprintf('%s\/fmri\/afni.matlab\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/bct.20121204\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/nbs1.2\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/gretna\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/spm8\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/surfstat\/',home)));\nclear home;\n","old_contents":"%------------ FreeSurfer -----------------------------%\nfshome = getenv('FREESURFER_HOME');\nfsmatlab = sprintf('%s\/matlab',fshome);\nif (exist(fsmatlab) == 7)\n    path(path,fsmatlab);\nend\nclear fshome fsmatlab;\n%-----------------------------------------------------%\n\n%------------ FreeSurfer FAST ------------------------%\nfsfasthome = getenv('FSFAST_HOME');\nfsfasttoolbox = sprintf('%s\/toolbox',fsfasthome);\nif (exist(fsfasttoolbox) == 7)\n    path(path,fsfasttoolbox);\nend\nclear fsfasthome fsfasttoolbox;\n%-----------------------------------------------------%\n\nhome = getenv('HOME');\naddpath(genpath(sprintf('%s\/fmri\/afni.matlab\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/bct.20121204\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/nbs1.2\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/gretna\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/spm8\/',home)));\nclear home;\n","returncode":0,"stderr":"","license":"apache-2.0","lang":"Matlab"}
{"commit":"943301418e3f84bce94d8ce3dca7b75aa4ce6559","subject":"update test output after correcting the indentation bug","message":"update test output after correcting the indentation bug\n\ngit-svn-id: 0dfcd2cbfde11cd338b51061f2a1a040b934da89@464 786e58fb-9377-0410-9ff7-e4ac0ac0635c\n","repos":"fangq\/jsonlab,fangq\/jsonlab","old_file":"examples\/jsonlab_basictest.matlab","new_file":"examples\/jsonlab_basictest.matlab","new_contents":"\n                              < M A T L A B >\n                  Copyright 1984-2007 The MathWorks, Inc.\n                         Version 7.4.0.287 (R2007a)\n                              January 29, 2007\n\n \n  To get started, type one of these: helpwin, helpdesk, or demo.\n  For product information, visit www.mathworks.com.\n \n>> >> >> >> >> >> >> >> >> \n%=================================================\n>> %  a simple scalar value \n>> %=================================================\n\n>> >> \ndata2json =\n\n    3.1416\n\n>> \nans =\n\n[3.141592654]\n\n\n>> \njson2data =\n\n    3.1416\n\n>> >> \n%=================================================\n>> %  a complex number\n>> %=================================================\n\n>> >> >> \ndata2json =\n\n   1.0000 + 2.0000i\n\n>> \nans =\n\n{\n\t\"_ArrayType_\": \"double\",\n\t\"_ArraySize_\": [1,1],\n\t\"_ArrayIsComplex_\": 1,\n\t\"_ArrayData_\": [1,2]\n}\n\n\n>> \njson2data =\n\n   1.0000 + 2.0000i\n\n>> >> \n%=================================================\n>> %  a complex matrix\n>> %=================================================\n\n>> >> >> \ndata2json =\n\n  35.0000 +26.0000i   1.0000 +19.0000i   6.0000 +24.0000i\n   3.0000 +21.0000i  32.0000 +23.0000i   7.0000 +25.0000i\n  31.0000 +22.0000i   9.0000 +27.0000i   2.0000 +20.0000i\n   8.0000 +17.0000i  28.0000 +10.0000i  33.0000 +15.0000i\n  30.0000 +12.0000i   5.0000 +14.0000i  34.0000 +16.0000i\n   4.0000 +13.0000i  36.0000 +18.0000i  29.0000 +11.0000i\n\n>> \nans =\n\n{\n\t\"_ArrayType_\": \"double\",\n\t\"_ArraySize_\": [6,3],\n\t\"_ArrayIsComplex_\": 1,\n\t\"_ArrayData_\": [\n\t\t[35,26],\n\t\t[3,21],\n\t\t[31,22],\n\t\t[8,17],\n\t\t[30,12],\n\t\t[4,13],\n\t\t[1,19],\n\t\t[32,23],\n\t\t[9,27],\n\t\t[28,10],\n\t\t[5,14],\n\t\t[36,18],\n\t\t[6,24],\n\t\t[7,25],\n\t\t[2,20],\n\t\t[33,15],\n\t\t[34,16],\n\t\t[29,11]\n\t]\n}\n\n\n>> \njson2data =\n\n  35.0000 +26.0000i   1.0000 +19.0000i   6.0000 +24.0000i\n   3.0000 +21.0000i  32.0000 +23.0000i   7.0000 +25.0000i\n  31.0000 +22.0000i   9.0000 +27.0000i   2.0000 +20.0000i\n   8.0000 +17.0000i  28.0000 +10.0000i  33.0000 +15.0000i\n  30.0000 +12.0000i   5.0000 +14.0000i  34.0000 +16.0000i\n   4.0000 +13.0000i  36.0000 +18.0000i  29.0000 +11.0000i\n\n>> >> \n%=================================================\n>> %  MATLAB special constants\n>> %=================================================\n\n>> >> \ndata2json =\n\n   NaN   Inf  -Inf\n\n>> \nans =\n\n{\n\t\"specials\": [\"_NaN_\",\"_Inf_\",\"-_Inf_\"]\n}\n\n\n>> \njson2data = \n\n    specials: [NaN Inf -Inf]\n\n>> >> \n%=================================================\n>> %  a real sparse matrix\n>> %=================================================\n\n>> >> \ndata2json =\n\n   (1,2)       0.6557\n   (9,2)       0.7577\n   (3,5)       0.8491\n  (10,5)       0.7431\n  (10,8)       0.3922\n   (7,9)       0.6787\n   (2,10)      0.0357\n   (6,10)      0.9340\n  (10,10)      0.6555\n\n>> \nans =\n\n{\n\t\"sparse\": {\n\t\t\"_ArrayType_\": \"double\",\n\t\t\"_ArraySize_\": [10,10],\n\t\t\"_ArrayIsSparse_\": 1,\n\t\t\"_ArrayData_\": [\n\t\t\t[1,2,0.6557406992],\n\t\t\t[9,2,0.7577401306],\n\t\t\t[3,5,0.8491293059],\n\t\t\t[10,5,0.7431324681],\n\t\t\t[10,8,0.3922270195],\n\t\t\t[7,9,0.6787351549],\n\t\t\t[2,10,0.03571167857],\n\t\t\t[6,10,0.9339932478],\n\t\t\t[10,10,0.6554778902]\n\t\t]\n\t}\n}\n\n\n>> \njson2data = \n\n    sparse: [10x10 double]\n\n>> >> \n%=================================================\n>> %  a complex sparse matrix\n>> %=================================================\n\n>> >> \ndata2json =\n\n   (1,2)      0.6557 - 0.6557i\n   (9,2)      0.7577 - 0.7577i\n   (3,5)      0.8491 - 0.8491i\n  (10,5)      0.7431 - 0.7431i\n  (10,8)      0.3922 - 0.3922i\n   (7,9)      0.6787 - 0.6787i\n   (2,10)     0.0357 - 0.0357i\n   (6,10)     0.9340 - 0.9340i\n  (10,10)     0.6555 - 0.6555i\n\n>> \nans =\n\n{\n\t\"complex_sparse\": {\n\t\t\"_ArrayType_\": \"double\",\n\t\t\"_ArraySize_\": [10,10],\n\t\t\"_ArrayIsComplex_\": 1,\n\t\t\"_ArrayIsSparse_\": 1,\n\t\t\"_ArrayData_\": [\n\t\t\t[1,2,0.6557406992,-0.6557406992],\n\t\t\t[9,2,0.7577401306,-0.7577401306],\n\t\t\t[3,5,0.8491293059,-0.8491293059],\n\t\t\t[10,5,0.7431324681,-0.7431324681],\n\t\t\t[10,8,0.3922270195,-0.3922270195],\n\t\t\t[7,9,0.6787351549,-0.6787351549],\n\t\t\t[2,10,0.03571167857,-0.03571167857],\n\t\t\t[6,10,0.9339932478,-0.9339932478],\n\t\t\t[10,10,0.6554778902,-0.6554778902]\n\t\t]\n\t}\n}\n\n\n>> \njson2data = \n\n    complex_sparse: [10x10 double]\n\n>> >> \n%=================================================\n>> %  an all-zero sparse matrix\n>> %=================================================\n\n>> >> >> \nans =\n\n{\n\t\"all_zero_sparse\": {\n\t\t\"_ArrayType_\": \"double\",\n\t\t\"_ArraySize_\": [2,3],\n\t\t\"_ArrayIsSparse_\": 1,\n\t\t\"_ArrayData_\": null\n\t}\n}\n\n\n>> \njson2data = \n\n    all_zero_sparse: [2x3 double]\n\n>> >> \n%=================================================\n>> %  an empty sparse matrix\n>> %=================================================\n\n>> >> >> \nans =\n\n{\n\t\"empty_sparse\": {\n\t\t\"_ArrayType_\": \"double\",\n\t\t\"_ArraySize_\": [0,0],\n\t\t\"_ArrayIsSparse_\": 1,\n\t\t\"_ArrayData_\": null\n\t}\n}\n\n\n>> \njson2data = \n\n    empty_sparse: []\n\n>> >> \n%=================================================\n>> %  an empty 0-by-0 real matrix\n>> %=================================================\n\n>> >> >> \nans =\n\n{\n\t\"empty_0by0_real\": {\n\t\t\"_ArrayType_\": \"double\",\n\t\t\"_ArraySize_\": [0,0],\n\t\t\"_ArrayData_\": null\n\t}\n}\n\n\n>> \njson2data = \n\n    empty_0by0_real: []\n\n>> >> \n%=================================================\n>> %  an empty 0-by-3 real matrix\n>> %=================================================\n\n>> >> >> \nans =\n\n{\n\t\"empty_0by3_real\": {\n\t\t\"_ArrayType_\": \"double\",\n\t\t\"_ArraySize_\": [0,3],\n\t\t\"_ArrayData_\": null\n\t}\n}\n\n\n>> \njson2data = \n\n    empty_0by3_real: [0x3 double]\n\n>> >> \n%=================================================\n>> %  a sparse real column vector\n>> %=================================================\n\n>> >> >> \nans =\n\n{\n\t\"sparse_column_vector\": {\n\t\t\"_ArrayType_\": \"double\",\n\t\t\"_ArraySize_\": [5,1],\n\t\t\"_ArrayIsSparse_\": 1,\n\t\t\"_ArrayData_\": [\n\t\t\t[2,3],\n\t\t\t[4,1],\n\t\t\t[5,4]\n\t\t]\n\t}\n}\n\n\n>> \njson2data = \n\n    sparse_column_vector: [5x1 double]\n\n>> >> \n%=================================================\n>> %  a sparse complex column vector\n>> %=================================================\n\n>> >> >> \nans =\n\n{\n\t\"complex_sparse_column_vector\": {\n\t\t\"_ArrayType_\": \"double\",\n\t\t\"_ArraySize_\": [5,1],\n\t\t\"_ArrayIsComplex_\": 1,\n\t\t\"_ArrayIsSparse_\": 1,\n\t\t\"_ArrayData_\": [\n\t\t\t[2,3,-3],\n\t\t\t[4,1,-1],\n\t\t\t[5,4,-4]\n\t\t]\n\t}\n}\n\n\n>> \njson2data = \n\n    complex_sparse_column_vector: [5x1 double]\n\n>> >> \n%=================================================\n>> %  a sparse real row vector\n>> %=================================================\n\n>> >> >> \nans =\n\n{\n\t\"sparse_row_vector\": {\n\t\t\"_ArrayType_\": \"double\",\n\t\t\"_ArraySize_\": [1,5],\n\t\t\"_ArrayIsSparse_\": 1,\n\t\t\"_ArrayData_\": [\n\t\t\t[2,3],\n\t\t\t[4,1],\n\t\t\t[5,4]\n\t\t]\n\t}\n}\n\n\n>> \njson2data = \n\n    sparse_row_vector: [0 3 0 1 4]\n\n>> >> \n%=================================================\n>> %  a sparse complex row vector\n>> %=================================================\n\n>> >> >> \nans =\n\n{\n\t\"complex_sparse_row_vector\": {\n\t\t\"_ArrayType_\": \"double\",\n\t\t\"_ArraySize_\": [1,5],\n\t\t\"_ArrayIsComplex_\": 1,\n\t\t\"_ArrayIsSparse_\": 1,\n\t\t\"_ArrayData_\": [\n\t\t\t[2,3,-3],\n\t\t\t[4,1,-1],\n\t\t\t[5,4,-4]\n\t\t]\n\t}\n}\n\n\n>> \njson2data = \n\n    complex_sparse_row_vector: [1x5 double]\n\n>> >> \n%=================================================\n>> %  a structure\n>> %=================================================\n\n>> >> \ndata2json = \n\n        name: 'Think Different'\n        year: 1997\n       magic: [3x3 double]\n     misfits: [Inf NaN]\n    embedded: [1x1 struct]\n\n>> \nans =\n\n{\n\t\"astruct\": {\n\t\t\"name\": \"Think Different\",\n\t\t\"year\": 1997,\n\t\t\"magic\": [\n\t\t\t[8,1,6],\n\t\t\t[3,5,7],\n\t\t\t[4,9,2]\n\t\t],\n\t\t\"misfits\": [\"_Inf_\",\"_NaN_\"],\n\t\t\"embedded\": {\n\t\t\t\"left\": true,\n\t\t\t\"right\": false\n\t\t}\n\t}\n}\n\n\n>> \njson2data = \n\n    astruct: [1x1 struct]\n\n>> >> \n%=================================================\n>> %  a structure array\n>> %=================================================\n\n>> >> >> >> >> \nans =\n\n{\n\t\"Supreme Commander\": [\n\t\t{\n\t\t\t\"name\": \"Nexus Prime\",\n\t\t\t\"rank\": 9\n\t\t},\n\t\t{\n\t\t\t\"name\": \"Sentinel Prime\",\n\t\t\t\"rank\": 9\n\t\t},\n\t\t{\n\t\t\t\"name\": \"Optimus Prime\",\n\t\t\t\"rank\": 9\n\t\t}\n\t]\n}\n\n\n>> \njson2data = \n\n    Supreme_0x20_Commander: {[1x1 struct]  [1x1 struct]  [1x1 struct]}\n\n>> >> \n%=================================================\n>> %  a cell array\n>> %=================================================\n\n>> >> >> >> >> \ndata2json = \n\n    [1x1 struct]\n    [1x1 struct]\n    [1x4 double]\n\n>> \nans =\n\n{\n\t\"debian\": [\n\t\t[\n\t\t\t{\n\t\t\t\t\"buzz\": 1.10,\n\t\t\t\t\"rex\": 1.20,\n\t\t\t\t\"bo\": 1.30,\n\t\t\t\t\"hamm\": 2.00,\n\t\t\t\t\"slink\": 2.10,\n\t\t\t\t\"potato\": 2.20,\n\t\t\t\t\"woody\": 3.00,\n\t\t\t\t\"sarge\": 3.10,\n\t\t\t\t\"etch\": 4.00,\n\t\t\t\t\"lenny\": 5.00,\n\t\t\t\t\"squeeze\": 6.00,\n\t\t\t\t\"wheezy\": 7.00\n\t\t\t},\n\t\t\t{\n\t\t\t\t\"Ubuntu\": [\n\t\t\t\t\t\"Kubuntu\",\n\t\t\t\t\t\"Xubuntu\",\n\t\t\t\t\t\"Lubuntu\"\n\t\t\t\t]\n\t\t\t},\n\t\t\t[10.04,10.10,11.04,11.10]\n\t\t]\n\t]\n}\n\n\n>> \njson2data = \n\n    debian: {{1x3 cell}}\n\n>> >> \n%=================================================\n>> %  invalid field-name handling\n>> %=================================================\n\n>> >> \njson2data = \n\n               ValidName: 1\n       x0x5F_InvalidName: 2\n       x0x3A_Field_0x3A_: 3\n    x0xE9A1B9__0xE79BAE_: '\u7edd\u5bc6'\n\n>> >> \n%=================================================\n>> %  a 2D cell array\n>> %=================================================\n\n>> >> >> \nans =\n\n{\n\t\"data2json\": [\n\t\t[\n\t\t\t[\n\t\t\t\t1,\n\t\t\t\t[\n\t\t\t\t\t2,\n\t\t\t\t\t3\n\t\t\t\t]\n\t\t\t],\n\t\t\t7\n\t\t],\n\t\t[\n\t\t\t[\n\t\t\t\t4,\n\t\t\t\t5\n\t\t\t],\n\t\t\t[\n\t\t\t\t8,\n\t\t\t\t9\n\t\t\t]\n\t\t],\n\t\t[\n\t\t\t6,\n\t\t\t10\n\t\t]\n\t]\n}\n\n\n>> \njson2data = \n\n    data2json: {{1x2 cell}  [2x2 double]  [6 10]}\n\n>> >> \n%=================================================\n>> %  a 2D struct array\n>> %=================================================\n\n>> >> \ndata2json = \n\n2x3 struct array with fields:\n    idx\n    data\n\n>> >> \nans =\n\n{\n\t\"data2json\": [\n\t\t[\n\t\t\t{\n\t\t\t\t\"idx\": 1,\n\t\t\t\t\"data\": \"structs\"\n\t\t\t},\n\t\t\t{\n\t\t\t\t\"idx\": 2,\n\t\t\t\t\"data\": \"structs\"\n\t\t\t}\n\t\t],\n\t\t[\n\t\t\t{\n\t\t\t\t\"idx\": 3,\n\t\t\t\t\"data\": \"structs\"\n\t\t\t},\n\t\t\t{\n\t\t\t\t\"idx\": 4,\n\t\t\t\t\"data\": \"structs\"\n\t\t\t}\n\t\t],\n\t\t[\n\t\t\t{\n\t\t\t\t\"idx\": 5,\n\t\t\t\t\"data\": \"structs\"\n\t\t\t},\n\t\t\t{\n\t\t\t\t\"idx\": 6,\n\t\t\t\t\"data\": \"structs\"\n\t\t\t}\n\t\t]\n\t]\n}\n\n\n>> \njson2data = \n\n    data2json: {{1x2 cell}  {1x2 cell}  {1x2 cell}}\n\n>> >> >> >> ","old_contents":"\n                              < M A T L A B >\n                  Copyright 1984-2007 The MathWorks, Inc.\n                         Version 7.4.0.287 (R2007a)\n                              January 29, 2007\n\n \n  To get started, type one of these: helpwin, helpdesk, or demo.\n  For product information, visit www.mathworks.com.\n \n>> >> >> >> >> >> >> >> >> \n%=================================================\n>> %  a simple scalar value \n>> %=================================================\n\n>> >> \ndata2json =\n\n    3.1416\n\n>> \nans =\n\n[3.141592654]\n\n\n>> \njson2data =\n\n    3.1416\n\n>> >> \n%=================================================\n>> %  a complex number\n>> %=================================================\n\n>> >> >> \ndata2json =\n\n   1.0000 + 2.0000i\n\n>> \nans =\n\n{\n\t\"_ArrayType_\": \"double\",\n\t\"_ArraySize_\": [1,1],\n\t\"_ArrayIsComplex_\": 1,\n\t\"_ArrayData_\": [1,2]\n}\n\n\n>> \njson2data =\n\n   1.0000 + 2.0000i\n\n>> >> \n%=================================================\n>> %  a complex matrix\n>> %=================================================\n\n>> >> >> \ndata2json =\n\n  35.0000 +26.0000i   1.0000 +19.0000i   6.0000 +24.0000i\n   3.0000 +21.0000i  32.0000 +23.0000i   7.0000 +25.0000i\n  31.0000 +22.0000i   9.0000 +27.0000i   2.0000 +20.0000i\n   8.0000 +17.0000i  28.0000 +10.0000i  33.0000 +15.0000i\n  30.0000 +12.0000i   5.0000 +14.0000i  34.0000 +16.0000i\n   4.0000 +13.0000i  36.0000 +18.0000i  29.0000 +11.0000i\n\n>> \nans =\n\n{\n\t\"_ArrayType_\": \"double\",\n\t\"_ArraySize_\": [6,3],\n\t\"_ArrayIsComplex_\": 1,\n\t\"_ArrayData_\": [\n\t\t[35,26],\n\t\t[3,21],\n\t\t[31,22],\n\t\t[8,17],\n\t\t[30,12],\n\t\t[4,13],\n\t\t[1,19],\n\t\t[32,23],\n\t\t[9,27],\n\t\t[28,10],\n\t\t[5,14],\n\t\t[36,18],\n\t\t[6,24],\n\t\t[7,25],\n\t\t[2,20],\n\t\t[33,15],\n\t\t[34,16],\n\t\t[29,11]\n\t]\n}\n\n\n>> \njson2data =\n\n  35.0000 +26.0000i   1.0000 +19.0000i   6.0000 +24.0000i\n   3.0000 +21.0000i  32.0000 +23.0000i   7.0000 +25.0000i\n  31.0000 +22.0000i   9.0000 +27.0000i   2.0000 +20.0000i\n   8.0000 +17.0000i  28.0000 +10.0000i  33.0000 +15.0000i\n  30.0000 +12.0000i   5.0000 +14.0000i  34.0000 +16.0000i\n   4.0000 +13.0000i  36.0000 +18.0000i  29.0000 +11.0000i\n\n>> >> \n%=================================================\n>> %  MATLAB special constants\n>> %=================================================\n\n>> >> \ndata2json =\n\n   NaN   Inf  -Inf\n\n>> \nans =\n\n{\n\t\"specials\": [\"_NaN_\",\"_Inf_\",\"-_Inf_\"]\n}\n\n\n>> \njson2data = \n\n    specials: [NaN Inf -Inf]\n\n>> >> \n%=================================================\n>> %  a real sparse matrix\n>> %=================================================\n\n>> >> \ndata2json =\n\n   (1,2)       0.6557\n   (9,2)       0.7577\n   (3,5)       0.8491\n  (10,5)       0.7431\n  (10,8)       0.3922\n   (7,9)       0.6787\n   (2,10)      0.0357\n   (6,10)      0.9340\n  (10,10)      0.6555\n\n>> \nans =\n\n{\n\t\"sparse\": {\n\t\t\"_ArrayType_\": \"double\",\n\t\t\"_ArraySize_\": [10,10],\n\t\t\"_ArrayIsSparse_\": 1,\n\t\t\"_ArrayData_\": [\n\t\t\t[1,2,0.6557406992],\n\t\t\t[9,2,0.7577401306],\n\t\t\t[3,5,0.8491293059],\n\t\t\t[10,5,0.7431324681],\n\t\t\t[10,8,0.3922270195],\n\t\t\t[7,9,0.6787351549],\n\t\t\t[2,10,0.03571167857],\n\t\t\t[6,10,0.9339932478],\n\t\t\t[10,10,0.6554778902]\n\t\t]\n\t}\n}\n\n\n>> \njson2data = \n\n    sparse: [10x10 double]\n\n>> >> \n%=================================================\n>> %  a complex sparse matrix\n>> %=================================================\n\n>> >> \ndata2json =\n\n   (1,2)      0.6557 - 0.6557i\n   (9,2)      0.7577 - 0.7577i\n   (3,5)      0.8491 - 0.8491i\n  (10,5)      0.7431 - 0.7431i\n  (10,8)      0.3922 - 0.3922i\n   (7,9)      0.6787 - 0.6787i\n   (2,10)     0.0357 - 0.0357i\n   (6,10)     0.9340 - 0.9340i\n  (10,10)     0.6555 - 0.6555i\n\n>> \nans =\n\n{\n\t\"complex_sparse\": {\n\t\t\"_ArrayType_\": \"double\",\n\t\t\"_ArraySize_\": [10,10],\n\t\t\"_ArrayIsComplex_\": 1,\n\t\t\"_ArrayIsSparse_\": 1,\n\t\t\"_ArrayData_\": [\n\t\t\t[1,2,0.6557406992,-0.6557406992],\n\t\t\t[9,2,0.7577401306,-0.7577401306],\n\t\t\t[3,5,0.8491293059,-0.8491293059],\n\t\t\t[10,5,0.7431324681,-0.7431324681],\n\t\t\t[10,8,0.3922270195,-0.3922270195],\n\t\t\t[7,9,0.6787351549,-0.6787351549],\n\t\t\t[2,10,0.03571167857,-0.03571167857],\n\t\t\t[6,10,0.9339932478,-0.9339932478],\n\t\t\t[10,10,0.6554778902,-0.6554778902]\n\t\t]\n\t}\n}\n\n\n>> \njson2data = \n\n    complex_sparse: [10x10 double]\n\n>> >> \n%=================================================\n>> %  an all-zero sparse matrix\n>> %=================================================\n\n>> >> >> \nans =\n\n{\n\t\"all_zero_sparse\": {\n\t\t\"_ArrayType_\": \"double\",\n\t\t\"_ArraySize_\": [2,3],\n\t\t\"_ArrayIsSparse_\": 1,\n\t\t\"_ArrayData_\": null\n\t}\n}\n\n\n>> \njson2data = \n\n    all_zero_sparse: [2x3 double]\n\n>> >> \n%=================================================\n>> %  an empty sparse matrix\n>> %=================================================\n\n>> >> >> \nans =\n\n{\n\t\"empty_sparse\": {\n\t\t\"_ArrayType_\": \"double\",\n\t\t\"_ArraySize_\": [0,0],\n\t\t\"_ArrayIsSparse_\": 1,\n\t\t\"_ArrayData_\": null\n\t}\n}\n\n\n>> \njson2data = \n\n    empty_sparse: []\n\n>> >> \n%=================================================\n>> %  an empty 0-by-0 real matrix\n>> %=================================================\n\n>> >> >> \nans =\n\n{\n\t\"empty_0by0_real\": {\n\t\t\"_ArrayType_\": \"double\",\n\t\t\"_ArraySize_\": [0,0],\n\t\t\"_ArrayData_\": null\n\t}\n}\n\n\n>> \njson2data = \n\n    empty_0by0_real: []\n\n>> >> \n%=================================================\n>> %  an empty 0-by-3 real matrix\n>> %=================================================\n\n>> >> >> \nans =\n\n{\n\t\"empty_0by3_real\": {\n\t\t\"_ArrayType_\": \"double\",\n\t\t\"_ArraySize_\": [0,3],\n\t\t\"_ArrayData_\": null\n\t}\n}\n\n\n>> \njson2data = \n\n    empty_0by3_real: [0x3 double]\n\n>> >> \n%=================================================\n>> %  a sparse real column vector\n>> %=================================================\n\n>> >> >> \nans =\n\n{\n\t\"sparse_column_vector\": {\n\t\t\"_ArrayType_\": \"double\",\n\t\t\"_ArraySize_\": [5,1],\n\t\t\"_ArrayIsSparse_\": 1,\n\t\t\"_ArrayData_\": [\n\t\t\t[2,3],\n\t\t\t[4,1],\n\t\t\t[5,4]\n\t\t]\n\t}\n}\n\n\n>> \njson2data = \n\n    sparse_column_vector: [5x1 double]\n\n>> >> \n%=================================================\n>> %  a sparse complex column vector\n>> %=================================================\n\n>> >> >> \nans =\n\n{\n\t\"complex_sparse_column_vector\": {\n\t\t\"_ArrayType_\": \"double\",\n\t\t\"_ArraySize_\": [5,1],\n\t\t\"_ArrayIsComplex_\": 1,\n\t\t\"_ArrayIsSparse_\": 1,\n\t\t\"_ArrayData_\": [\n\t\t\t[2,3,-3],\n\t\t\t[4,1,-1],\n\t\t\t[5,4,-4]\n\t\t]\n\t}\n}\n\n\n>> \njson2data = \n\n    complex_sparse_column_vector: [5x1 double]\n\n>> >> \n%=================================================\n>> %  a sparse real row vector\n>> %=================================================\n\n>> >> >> \nans =\n\n{\n\t\"sparse_row_vector\": {\n\t\t\"_ArrayType_\": \"double\",\n\t\t\"_ArraySize_\": [1,5],\n\t\t\"_ArrayIsSparse_\": 1,\n\t\t\"_ArrayData_\": [\n\t\t\t[2,3],\n\t\t\t[4,1],\n\t\t\t[5,4]\n\t\t]\n\t}\n}\n\n\n>> \njson2data = \n\n    sparse_row_vector: [0 3 0 1 4]\n\n>> >> \n%=================================================\n>> %  a sparse complex row vector\n>> %=================================================\n\n>> >> >> \nans =\n\n{\n\t\"complex_sparse_row_vector\": {\n\t\t\"_ArrayType_\": \"double\",\n\t\t\"_ArraySize_\": [1,5],\n\t\t\"_ArrayIsComplex_\": 1,\n\t\t\"_ArrayIsSparse_\": 1,\n\t\t\"_ArrayData_\": [\n\t\t\t[2,3,-3],\n\t\t\t[4,1,-1],\n\t\t\t[5,4,-4]\n\t\t]\n\t}\n}\n\n\n>> \njson2data = \n\n    complex_sparse_row_vector: [1x5 double]\n\n>> >> \n%=================================================\n>> %  a structure\n>> %=================================================\n\n>> >> \ndata2json = \n\n        name: 'Think Different'\n        year: 1997\n       magic: [3x3 double]\n     misfits: [Inf NaN]\n    embedded: [1x1 struct]\n\n>> \nans =\n\n{\n\t\"astruct\": {\n\t\t\"name\": \"Think Different\",\n\t\t\"year\": 1997,\n\t\t\"magic\": [\n\t\t\t[8,1,6],\n\t\t\t[3,5,7],\n\t\t\t[4,9,2]\n\t\t],\n\t\t\"misfits\": [\"_Inf_\",\"_NaN_\"],\n\t\t\"embedded\": {\n\t\t\t\"left\": true,\n\t\t\t\"right\": false\n\t\t}\n\t}\n}\n\n\n>> \njson2data = \n\n    astruct: [1x1 struct]\n\n>> >> \n%=================================================\n>> %  a structure array\n>> %=================================================\n\n>> >> >> >> >> \nans =\n\n{\n\t\"Supreme Commander\": [\n\t\t{\n\t\t\t\"name\": \"Nexus Prime\",\n\t\t\t\"rank\": 9\n\t\t},\n\t\t{\n\t\t\t\"name\": \"Sentinel Prime\",\n\t\t\t\"rank\": 9\n\t\t},\n\t\t{\n\t\t\t\"name\": \"Optimus Prime\",\n\t\t\t\"rank\": 9\n\t\t}\n\t]\n}\n\n\n>> \njson2data = \n\n    Supreme_0x20_Commander: {[1x1 struct]  [1x1 struct]  [1x1 struct]}\n\n>> >> \n%=================================================\n>> %  a cell array\n>> %=================================================\n\n>> >> >> >> >> \ndata2json = \n\n    [1x1 struct]\n    [1x1 struct]\n    [1x4 double]\n\n>> \nans =\n\n{\n\t\"debian\": [\n\t\t[\n\t\t\t{\n\t\t\t\t\"buzz\": 1.10,\n\t\t\t\t\"rex\": 1.20,\n\t\t\t\t\"bo\": 1.30,\n\t\t\t\t\"hamm\": 2.00,\n\t\t\t\t\"slink\": 2.10,\n\t\t\t\t\"potato\": 2.20,\n\t\t\t\t\"woody\": 3.00,\n\t\t\t\t\"sarge\": 3.10,\n\t\t\t\t\"etch\": 4.00,\n\t\t\t\t\"lenny\": 5.00,\n\t\t\t\t\"squeeze\": 6.00,\n\t\t\t\t\"wheezy\": 7.00\n\t\t\t},\n\t\t\t{\n\t\t\t\t\"Ubuntu\": [\n\t\t\t\t\t\"Kubuntu\",\n\t\t\t\t\t\"Xubuntu\",\n\t\t\t\t\t\"Lubuntu\"\n\t\t\t\t]\n\t\t\t},\n\t\t\t[10.04,10.10,11.04,11.10]\n\t\t]\n\t]\n}\n\n\n>> \njson2data = \n\n    debian: {{1x3 cell}}\n\n>> >> \n%=================================================\n>> %  invalid field-name handling\n>> %=================================================\n\n>> >> \njson2data = \n\n               ValidName: 1\n       x0x5F_InvalidName: 2\n       x0x3A_Field_0x3A_: 3\n    x0xE9A1B9__0xE79BAE_: '\u7edd\u5bc6'\n\n>> >> \n%=================================================\n>> %  a 2D cell array\n>> %=================================================\n\n>> >> >> \nans =\n\n{\n\t\"data2json\": [\n\t\t[\n\t\t\t[\n\t\t\t\t1,\n\t\t\t\t[\n\t\t\t\t\t2,\n\t\t\t\t\t3\n\t\t\t\t]\n\t\t\t],\n\t\t\t\t7\n\t\t],\n\t\t[\n\t\t\t[\n\t\t\t\t4,\n\t\t\t\t5\n\t\t\t],\n\t\t\t[\n\t\t\t\t8,\n\t\t\t\t9\n\t\t\t]\n\t\t],\n\t\t[\n\t\t\t\t6,\n\t\t\t\t10\n\t\t]\n\t]\n}\n\n\n>> \njson2data = \n\n    data2json: {{1x2 cell}  [2x2 double]  [6 10]}\n\n>> >> \n%=================================================\n>> %  a 2D struct array\n>> %=================================================\n\n>> >> \ndata2json = \n\n2x3 struct array with fields:\n    idx\n    data\n\n>> >> \nans =\n\n{\n\t\"data2json\": [\n\t\t[\n\t\t\t{\n\t\t\t\t\"idx\": 1,\n\t\t\t\t\"data\": \"structs\"\n\t\t\t},\n\t\t\t{\n\t\t\t\t\"idx\": 2,\n\t\t\t\t\"data\": \"structs\"\n\t\t\t}\n\t\t],\n\t\t[\n\t\t\t{\n\t\t\t\t\"idx\": 3,\n\t\t\t\t\"data\": \"structs\"\n\t\t\t},\n\t\t\t{\n\t\t\t\t\"idx\": 4,\n\t\t\t\t\"data\": \"structs\"\n\t\t\t}\n\t\t],\n\t\t[\n\t\t\t{\n\t\t\t\t\"idx\": 5,\n\t\t\t\t\"data\": \"structs\"\n\t\t\t},\n\t\t\t{\n\t\t\t\t\"idx\": 6,\n\t\t\t\t\"data\": \"structs\"\n\t\t\t}\n\t\t]\n\t]\n}\n\n\n>> \njson2data = \n\n    data2json: {{1x2 cell}  {1x2 cell}  {1x2 cell}}\n\n>> >> >> >> ","returncode":0,"stderr":"","license":"bsd-3-clause","lang":"Matlab"}
{"commit":"464e8e11af1a9b496de01f7031e86df80710bf09","subject":"forgot sprintf, fixed","message":"forgot sprintf, fixed\n","repos":"dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim,dawnsong\/spf13-vim","old_file":"fmri.matlab","new_file":"fmri.matlab","new_contents":"%------------ FreeSurfer -----------------------------%\nfshome = getenv('FREESURFER_HOME');\nfsmatlab = sprintf('%s\/matlab',fshome);\nif (exist(fsmatlab) == 7)\n    path(path,fsmatlab);\nend\nclear fshome fsmatlab;\n%-----------------------------------------------------%\n\n%------------ FreeSurfer FAST ------------------------%\nfsfasthome = getenv('FSFAST_HOME');\nfsfasttoolbox = sprintf('%s\/toolbox',fsfasthome);\nif (exist(fsfasttoolbox) == 7)\n    path(path,fsfasttoolbox);\nend\nclear fsfasthome fsfasttoolbox;\n%-----------------------------------------------------%\n\nhome = getenv('HOME');\naddpath(genpath(sprintf('%s\/fmri\/afni.matlab\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/bct.20121204\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/nbs1.2\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/gretna\/',home)));\naddpath(genpath(sprintf('%s\/fmri\/spm8\/',home)));\nclear home;\n","old_contents":"%------------ FreeSurfer -----------------------------%\nfshome = getenv('FREESURFER_HOME');\nfsmatlab = sprintf('%s\/matlab',fshome);\nif (exist(fsmatlab) == 7)\n    path(path,fsmatlab);\nend\nclear fshome fsmatlab;\n%-----------------------------------------------------%\n\n%------------ FreeSurfer FAST ------------------------%\nfsfasthome = getenv('FSFAST_HOME');\nfsfasttoolbox = sprintf('%s\/toolbox',fsfasthome);\nif (exist(fsfasttoolbox) == 7)\n    path(path,fsfasttoolbox);\nend\nclear fsfasthome fsfasttoolbox;\n%-----------------------------------------------------%\n\nhome = getenv('HOME');\naddpath(genpath('%s\/fmri\/afni.matlab\/',home));\naddpath(genpath('%s\/fmri\/bct.20121204\/',home));\naddpath(genpath('%s\/fmri\/nbs1.2\/',home));\naddpath(genpath('%s\/fmri\/gretna\/',home));\n","returncode":0,"stderr":"","license":"apache-2.0","lang":"Matlab"}
{"commit":"fe31f9f36877fb89e2d297d0357197a165ccef0a","subject":"Matlab code to implement Mahalanobis distance algorithm.","message":"Matlab code to implement Mahalanobis distance algorithm.","repos":"suryadeepchatterjee3107\/Key_Frame_identification","old_file":"MahalanobisDistance.matlab","new_file":"MahalanobisDistance.matlab","new_contents":"function [ r ] = difference3( f1,f2 )\n       \naa=rgb2gray(f1);\nbb=rgb2gray(f2);\naa=rot90(aa);\nbb=rot90(bb);\nbb=mean(bb);\n\nk=mahal(bb,double(aa));\n\n\nr=sum(k);\nend\n\n","old_contents":"","returncode":1,"stderr":"error: pathspec 'MahalanobisDistance.matlab' did not match any file(s) known to git\n","license":"apache-2.0","lang":"Matlab"}
{"commit":"7e8aadd39663c81ca47d9e3d6e69553784123506","subject":"Testing script for M-SOM parameters evaluation","message":"Testing script for M-SOM parameters evaluation\n","repos":"TWOEARS\/audio-visual-integration","old_file":"head_turning_modulation_model_simdata\/tests\/MSOM_study.matlab","new_file":"head_turning_modulation_model_simdata\/tests\/MSOM_study.matlab","new_contents":"","old_contents":"","returncode":128,"stderr":"fatal: unable to access 'https:\/\/github.com\/TWOEARS\/audio-visual-integration.git\/': The requested URL returned error: 403\n","license":"mit","lang":"Matlab"}
{"commit":"e4cbf8c46c3ffa4537b9f7f97b76f19e7f903579","subject":"Matlab code to implement Euclidean Distance algorithm","message":"Matlab code to implement Euclidean Distance algorithm","repos":"suryadeepchatterjee3107\/Key_Frame_identification","old_file":"EuclideanDistance.matlab","new_file":"EuclideanDistance.matlab","new_contents":"","old_contents":"","returncode":128,"stderr":"fatal: unable to access 'https:\/\/github.com\/suryadeepchatterjee3107\/Key_Frame_identification.git\/': The requested URL returned error: 403\n","license":"apache-2.0","lang":"Matlab"}
{"commit":"38fd7075f60b9020c2d86bac9c5c24ceaa36c71f","subject":"Matlab code for ThingSpeak","message":"Matlab code for ThingSpeak\n","repos":"miaoski\/pm25-sensors-comparison,miaoski\/pm25-sensors-comparison","old_file":"paint.matlab","new_file":"paint.matlab","new_contents":"readChannelID = 84835;\n\n[sht31, time] = thingSpeakRead(readChannelID, 'Fields', 1, 'NumPoints', 10);\nam2302 = thingSpeakRead(readChannelID, 'Fields', 3, 'NumPoints', 10);\nam2320 = thingSpeakRead(readChannelID, 'Fields', 5, 'NumPoints', 10);\n\nthingSpeakPlot(time, [sht31, am2302, am2320], 'legend',...\n    {'SHT-31', 'AM2302', 'AM2320'});\n\n","old_contents":"","returncode":1,"stderr":"error: pathspec 'paint.matlab' did not match any file(s) known to git\n","license":"mit","lang":"Matlab"}
{"commit":"95130e8782fe1a83771bd1c6f72ecb0a1e91b0a2","subject":"Update static\/vendors\/ace-builds\/demo\/kitchen-sink\/docs\/matlab.matlab","message":"Update static\/vendors\/ace-builds\/demo\/kitchen-sink\/docs\/matlab.matlab\n\nSigned-off-by: Bernard Ojengwa <fccb4cc00c1ba7e51bf5c2b5f77130b9fe8d917e@gmail.com>\n","repos":"apipanda\/openssl,apipanda\/openssl,apipanda\/openssl,apipanda\/openssl","old_file":"static\/vendors\/ace-builds\/demo\/kitchen-sink\/docs\/matlab.matlab","new_file":"static\/vendors\/ace-builds\/demo\/kitchen-sink\/docs\/matlab.matlab","new_contents":"","old_contents":"","returncode":128,"stderr":"fatal: unable to access 'https:\/\/github.com\/apipanda\/openssl.git\/': The requested URL returned error: 403\n","license":"mit","lang":"Matlab"}
{"commit":"668b824df3b4b3ab4d2c367b01b461d5a8ca49cf","subject":"Create VideoToFrames.matlab","message":"Create VideoToFrames.matlab\n\nThis is the matlab code to convert input frames into video and count the number of frames. This takes a lot of time to run, to make the running time a bit less boring I have added a module which will show glimpses of the frames.","repos":"suryadeepchatterjee3107\/Key_Frame_identification","old_file":"VideoToFrames.matlab","new_file":"VideoToFrames.matlab","new_contents":"clc;\nclose all;\ncountm=0;\ncounte=0;\ncounth=0;\ntot=1;\navg=0;\nmov = VideoReader('longvid.avi.mp4');\n% movie(mov);\n% Determine how many frames there are.\nnumberOfFrames = size(mov, 2);\nnumberOfFramesWritten = 0;\n% Output folder\noutputFolder = fullfile(cd, 'frames');\nif ~exist(outputFolder, 'dir')\n    mkdir(outputFolder);\nend\noutputFolder3 = fullfile(cd, 'frames3');\nif ~exist(outputFolder3, 'dir')\n    mkdir(outputFolder3);\nend\noutputFolder2 = fullfile(cd, 'frames2');\nif ~exist(outputFolder2, 'dir')\n    mkdir(outputFolder2);\nend\noutputFolder1 = fullfile(cd, 'frames1');\nif ~exist(outputFolder1, 'dir')\n    mkdir(outputFolder1);\nend\n\n%getting no of frames\n\nnumberOfFrames = mov.NumberOfFrames;\nnumberOfFramesWritten = 0;\n oldFrame = read(mov, 1);\n  oldFrame1 = read(mov, 1); oldFrame2 = read(mov, 1); oldFrame3 = read(mov, 1);\n imshow(oldFrame);\nee=0;\nfor frame = 1 : 1000\n     outputBaseFileName = sprintf('%3.3d.png', frame);\n        outputFullFileName = fullfile(outputFolder, outputBaseFileName);\n        imwrite(thisFrame, outputFullFileName, 'png')\n    \n    thisFrame = read(mov, frame);\n     dd = difference3(thisFrame,oldFrame3)\n     ff = int32(dd)\n    % ee=ee+dd;\n    % avg=ee\/tot;\n    % gg=int32(avg)\n     %fds(frame)=ff;\n\n         if(ff>70)\n        outputBaseFileName = sprintf('%3.3d.png', frame);\n        outputFullFileName = fullfile(outputFolder3, outputBaseFileName);\n        imwrite(thisFrame, outputFullFileName, 'png');\n        progressIndication = sprintf('Wrote frame %4d of %d.', frame,numberOfFrames);\n        disp(progressIndication);\n        numberOfFramesWritten = numberOfFramesWritten + 1;\n          countm=countm+1;\n            oldFrame3=thisFrame;\n        % imshow(thisFrame)\n    end\n        \n    if((difference2(thisFrame,oldFrame2))>15000)\n        outputBaseFileName = sprintf('%3.3d.png', frame);\n        outputFullFileName = fullfile(outputFolder2, outputBaseFileName);\n        imwrite(thisFrame, outputFullFileName, 'png');\n        progressIndication = sprintf('Wrote frame %4d of %d.', frame,numberOfFrames);\n        disp(progressIndication);\n        numberOfFramesWritten = numberOfFramesWritten + 1;\n            oldFrame2=thisFrame;\n           counte=counte+1;\n            %imshow(oldFrame);\n    end\n    if((difference(thisFrame,oldFrame1))>45000)\n        outputBaseFileName = sprintf('%3.3d.png', frame);\n        outputFullFileName = fullfile(outputFolder1, outputBaseFileName);\n        imwrite(thisFrame, outputFullFileName, 'png');\n        progressIndication = sprintf('Wrote frame %4d of %d.', frame,numberOfFrames);\n        disp(progressIndication);\n        numberOfFramesWritten = numberOfFramesWritten + 1;\n        counth=counth+1;   \n        oldFrame1=thisFrame;\n           % imshow(oldFrame);\n    end\n    tot=tot+1;\n    oldFrame=thisFrame;\n %   'hello'\n    \n    [counte,counth,countm]\n    \n    bar([tot,counth,counte,countm])\n   xlabel('technique')\n      ylabel('number of frames')\n    set(gca,'XTickLabel',{'total', 'Histogramic', 'Eucledian', 'Mahalanobis'})\nsaveas(gcf,'BarChartFile.png')\n\n  %  imshow('BarChartFile.png')\n    \n      %imshow(thisFrame);\nend\n  \n%progressIndication = sprintf('Wrote %d frames to folder \"%s\"',numberOfFramesWritten,outputFolder);\ndisp(progressIndication); bar([counth,counte,countm])\n\nxlabel('technique')\n      ylabel('number of frames')\n    set(gca,'XTickLabel',{'Histogramic', 'Eucledian', 'Mahalanobis'})\n\nsaveas(gcf,'BarChartFile.png')\n\n","old_contents":"","returncode":1,"stderr":"error: pathspec 'VideoToFrames.matlab' did not match any file(s) known to git\n","license":"apache-2.0","lang":"Matlab"}