Title: A pliable lasso for the Cox model,
Abstract: We introduce a pliable lasso method for estimation of interaction effects in
the Cox proportional hazards model framework. The pliable lasso is a linear
model that includes interactions between covariates X and a set of modifying
variables Z and assumes sparsity of the main effects and interaction effects.
The hierarchical penalty excludes interaction effects when the corresponding
main effects are zero: this avoids overfitting and an explosion of model
complexity. We extend this method to the Cox model for survival data,
incorporating modifiers that are either fixed or varying in time into the
partial likelihood. For example, this allows modeling of survival times that
differ based on interactions of genes with age, gender, or other demographic
information. The optimization is done by blockwise coordinate descent on a
second order approximation of the objective.