Title: HTMoL: full-stack solution for remote access, visualization, and analysis of Molecular Dynamics trajectory data,
Abstract: The field of structural bioinformatics has seen significant advances with the
use of Molecular Dynamics (MD) simulations of biological systems. The MD
methodology has allowed to explain and discover molecular mechanisms in a wide
range of natural processes. There is an impending need to readily share the
ever-increasing amount of MD data, which has been hindered by the lack of
specialized tools in the past. To solve this problem, we present HTMoL, a
state-of-the-art plug-in-free hardware-accelerated web application specially
designed to efficiently transfer and visualize raw MD trajectory files on a web
browser. Now, individual research labs can publish MD data on the Internet, or
use HTMoL to profoundly improve scientific reports by including supplemental MD
data in a journal publication. HTMoL can also be used as a visualization
interface to access MD trajectories generated on a high-performance computer
center directly.
Availability: HTMoL is available free of charge for academic use. All major
browsers are supported. A complete online documentation including instructions
for download, installation, configuration, and examples is available at the
HTMoL website this http URL. Supplementary data are available
online. Corresponding author: mauricio.carrillo@cinvestav.mx