public static void setComp(File f) throws FileNotFoundException{
			
		//Reset values
		matchSGaps.clear();
		matchQGaps.clear();
		qgaps = 0;
		sgaps = 0;
		newmatch = -1;
		getQuery = false;
		getSubject = false;
		
		currentComp = f;		
		scan = new Scanner(currentComp);		
	}