 After being told by a panel of Senators that Fringe Division is not worth the human or fiscal cost , Broyles is given the transformation device by Peter so Broyles can justify Fringe Division remaining active . In a separate scene , Agent Jessup is shown working at a computer , annotating an image of the creature from The Transformation with biblical verses , notably from the Book of Revelation . The final scene reveals that Charlie is actually the shapeshifter , who disposes of the real agent 's body in a furnace beneath the hospital . 
