fix broken README.md
Browse files
README.md
CHANGED
@@ -4,15 +4,6 @@ license: cc-by-4.0
|
|
4 |
size_categories:
|
5 |
- 100k<n<1M
|
6 |
pretty_name: 'Microbiome Immunity Project: Protein Universe'
|
7 |
-
config_names:
|
8 |
-
- rosetta_high_quality_models
|
9 |
-
- rosetta_low_quality_models
|
10 |
-
- dmpfold_high_quality_models
|
11 |
-
- dmpfold_low_quality_models
|
12 |
-
- rosetta_high_quality_function_predictions
|
13 |
-
- rosetta_low_quality_function_predictions
|
14 |
-
- dmpfold_high_quality_function_predictions
|
15 |
-
- dmpfold_low_quality_function_predictions
|
16 |
tags:
|
17 |
- chemistry
|
18 |
- biology
|
@@ -55,6 +46,16 @@ citation_apa: Koehler Leman, J., Szczerbiak, P., Renfrew, P. D., Gligorijevic, V
|
|
55 |
Fisk, I., Xavier, R. J., Knight, R., Bonneau, R., Kosciolek, T. (2023). Sequence-structure-function
|
56 |
relationships in the microbial protein universe. Nature Communications, 14(1), 2351.
|
57 |
doi:10.1038/s41467-023-37896-w
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
58 |
configs:
|
59 |
- config_name: rosetta_high_quality_models
|
60 |
data_files:
|
@@ -70,7 +71,37 @@ configs:
|
|
70 |
path: dmpfold_high_quality_models/data/train-*
|
71 |
- config_name: dmpfold_low_quality_models
|
72 |
data_files:
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
73 |
- name: train
|
|
|
74 |
- config_name: rosetta_low_quality_models
|
75 |
features:
|
76 |
- name: id
|
@@ -97,6 +128,9 @@ configs:
|
|
97 |
dtype: float64
|
98 |
splits:
|
99 |
- name: train
|
|
|
|
|
|
|
100 |
- config_name: dmpfold_high_quality_models
|
101 |
features:
|
102 |
- name: id
|
@@ -114,13 +148,13 @@ configs:
|
|
114 |
splits:
|
115 |
- name: train
|
116 |
- config_name: rosetta_high_quality_function_predictions
|
117 |
-
|
118 |
- config_name: rosetta_low_quality_function_predictions
|
119 |
-
|
120 |
- config_name: dmpfold_high_quality_function_predictions
|
121 |
-
|
122 |
- config_name: dmpfold_low_quality_function_predictions
|
123 |
-
|
124 |
- config_name: DeepFRI_labels
|
125 |
features:
|
126 |
- name: label_id
|
|
|
4 |
size_categories:
|
5 |
- 100k<n<1M
|
6 |
pretty_name: 'Microbiome Immunity Project: Protein Universe'
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
7 |
tags:
|
8 |
- chemistry
|
9 |
- biology
|
|
|
46 |
Fisk, I., Xavier, R. J., Knight, R., Bonneau, R., Kosciolek, T. (2023). Sequence-structure-function
|
47 |
relationships in the microbial protein universe. Nature Communications, 14(1), 2351.
|
48 |
doi:10.1038/s41467-023-37896-w
|
49 |
+
config_names:
|
50 |
+
- rosetta_high_quality_models
|
51 |
+
- rosetta_low_quality_models
|
52 |
+
- dmpfold_high_quality_models
|
53 |
+
- dmpfold_low_quality_models
|
54 |
+
- rosetta_high_quality_function_predictions
|
55 |
+
- rosetta_low_quality_function_predictions
|
56 |
+
- dmpfold_high_quality_function_predictions
|
57 |
+
- dmpfold_low_quality_function_predictions
|
58 |
+
|
59 |
configs:
|
60 |
- config_name: rosetta_high_quality_models
|
61 |
data_files:
|
|
|
71 |
path: dmpfold_high_quality_models/data/train-*
|
72 |
- config_name: dmpfold_low_quality_models
|
73 |
data_files:
|
74 |
+
- split: train
|
75 |
+
path: dmpfold_low_quality_models/data/train-*
|
76 |
+
|
77 |
+
dataset_info:
|
78 |
+
- config_name: rosetta_high_quality_models
|
79 |
+
features:
|
80 |
+
- name: id
|
81 |
+
dtype: string
|
82 |
+
- name: pdb
|
83 |
+
dtype: large_string
|
84 |
+
- name: Filter_Stage2_aBefore
|
85 |
+
dtype: float64
|
86 |
+
- name: Filter_Stage2_bQuarter
|
87 |
+
dtype: float64
|
88 |
+
- name: Filter_Stage2_cHalf
|
89 |
+
dtype: float64
|
90 |
+
- name: Filter_Stage2_dEnd
|
91 |
+
dtype: float64
|
92 |
+
- name: clashes_bb
|
93 |
+
dtype: float64
|
94 |
+
- name: clashes_total
|
95 |
+
dtype: float64
|
96 |
+
- name: score
|
97 |
+
dtype: float64
|
98 |
+
- name: silent_score
|
99 |
+
dtype: float64
|
100 |
+
- name: time
|
101 |
+
dtype: float64
|
102 |
+
splits:
|
103 |
- name: train
|
104 |
+
|
105 |
- config_name: rosetta_low_quality_models
|
106 |
features:
|
107 |
- name: id
|
|
|
128 |
dtype: float64
|
129 |
splits:
|
130 |
- name: train
|
131 |
+
- config_name: dmpfold_low_quality_models
|
132 |
+
data_files:
|
133 |
+
- name: train
|
134 |
- config_name: dmpfold_high_quality_models
|
135 |
features:
|
136 |
- name: id
|
|
|
148 |
splits:
|
149 |
- name: train
|
150 |
- config_name: rosetta_high_quality_function_predictions
|
151 |
+
splits: train
|
152 |
- config_name: rosetta_low_quality_function_predictions
|
153 |
+
splits: train
|
154 |
- config_name: dmpfold_high_quality_function_predictions
|
155 |
+
splits: train
|
156 |
- config_name: dmpfold_low_quality_function_predictions
|
157 |
+
splits: train
|
158 |
- config_name: DeepFRI_labels
|
159 |
features:
|
160 |
- name: label_id
|