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fix broken README.md

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  1. README.md +47 -13
README.md CHANGED
@@ -4,15 +4,6 @@ license: cc-by-4.0
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  size_categories:
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  - 100k<n<1M
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  pretty_name: 'Microbiome Immunity Project: Protein Universe'
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- config_names:
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- - rosetta_high_quality_models
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- - rosetta_low_quality_models
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- - dmpfold_high_quality_models
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- - dmpfold_low_quality_models
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- - rosetta_high_quality_function_predictions
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- - rosetta_low_quality_function_predictions
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- - dmpfold_high_quality_function_predictions
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- - dmpfold_low_quality_function_predictions
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  tags:
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  - chemistry
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  - biology
@@ -55,6 +46,16 @@ citation_apa: Koehler Leman, J., Szczerbiak, P., Renfrew, P. D., Gligorijevic, V
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  Fisk, I., Xavier, R. J., Knight, R., Bonneau, R., Kosciolek, T. (2023). Sequence-structure-function
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  relationships in the microbial protein universe. Nature Communications, 14(1), 2351.
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  doi:10.1038/s41467-023-37896-w
 
 
 
 
 
 
 
 
 
 
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  configs:
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  - config_name: rosetta_high_quality_models
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  data_files:
@@ -70,7 +71,37 @@ configs:
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  path: dmpfold_high_quality_models/data/train-*
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  - config_name: dmpfold_low_quality_models
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  data_files:
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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  - name: train
 
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  - config_name: rosetta_low_quality_models
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  features:
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  - name: id
@@ -97,6 +128,9 @@ configs:
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  dtype: float64
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  splits:
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  - name: train
 
 
 
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  - config_name: dmpfold_high_quality_models
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  features:
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  - name: id
@@ -114,13 +148,13 @@ configs:
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  splits:
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  - name: train
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  - config_name: rosetta_high_quality_function_predictions
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- -splits: train
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  - config_name: rosetta_low_quality_function_predictions
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- -splits: train
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  - config_name: dmpfold_high_quality_function_predictions
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- -splits: train
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  - config_name: dmpfold_low_quality_function_predictions
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- -splits: train
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  - config_name: DeepFRI_labels
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  features:
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  - name: label_id
 
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  size_categories:
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  - 100k<n<1M
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  pretty_name: 'Microbiome Immunity Project: Protein Universe'
 
 
 
 
 
 
 
 
 
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  tags:
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  - chemistry
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  - biology
 
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  Fisk, I., Xavier, R. J., Knight, R., Bonneau, R., Kosciolek, T. (2023). Sequence-structure-function
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  relationships in the microbial protein universe. Nature Communications, 14(1), 2351.
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  doi:10.1038/s41467-023-37896-w
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+ config_names:
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+ - rosetta_high_quality_models
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+ - rosetta_low_quality_models
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+ - dmpfold_high_quality_models
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+ - dmpfold_low_quality_models
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+ - rosetta_high_quality_function_predictions
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+ - rosetta_low_quality_function_predictions
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+ - dmpfold_high_quality_function_predictions
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+ - dmpfold_low_quality_function_predictions
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+
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  configs:
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  - config_name: rosetta_high_quality_models
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  data_files:
 
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  path: dmpfold_high_quality_models/data/train-*
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  - config_name: dmpfold_low_quality_models
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  data_files:
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+ - split: train
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+ path: dmpfold_low_quality_models/data/train-*
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+
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+ dataset_info:
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+ - config_name: rosetta_high_quality_models
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+ features:
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+ - name: id
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+ dtype: string
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+ - name: pdb
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+ dtype: large_string
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+ - name: Filter_Stage2_aBefore
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+ dtype: float64
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+ - name: Filter_Stage2_bQuarter
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+ dtype: float64
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+ - name: Filter_Stage2_cHalf
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+ dtype: float64
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+ - name: Filter_Stage2_dEnd
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+ dtype: float64
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+ - name: clashes_bb
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+ dtype: float64
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+ - name: clashes_total
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+ dtype: float64
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+ - name: score
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+ dtype: float64
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+ - name: silent_score
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+ dtype: float64
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+ - name: time
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+ dtype: float64
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+ splits:
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  - name: train
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+
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  - config_name: rosetta_low_quality_models
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  features:
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  - name: id
 
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  dtype: float64
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  splits:
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  - name: train
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+ - config_name: dmpfold_low_quality_models
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+ data_files:
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+ - name: train
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  - config_name: dmpfold_high_quality_models
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  features:
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  - name: id
 
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  splits:
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  - name: train
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  - config_name: rosetta_high_quality_function_predictions
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+ splits: train
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  - config_name: rosetta_low_quality_function_predictions
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+ splits: train
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  - config_name: dmpfold_high_quality_function_predictions
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+ splits: train
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  - config_name: dmpfold_low_quality_function_predictions
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+ splits: train
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  - config_name: DeepFRI_labels
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  features:
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  - name: label_id