text: # Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
  # Spack Project Developers. See the top-level COPYRIGHT file for details.
  #
  # SPDX-License-Identifier: (Apache-2.0 OR MIT)
  
  from spack import *
  
  
  class Tabix(MakefilePackage):
      """Generic indexer for TAB-delimited genome position files"""
  
      homepage = "https://github.com/samtools/tabix"
      git      = "https://github.com/samtools/tabix.git"
  
      version('2013-12-16', commit='1ae158ac79b459f5feeed7490c67519b14ce9f35')
  
      depends_on('perl', type=('build', 'run'))
      depends_on('python', type=('build', 'run'))
      depends_on('zlib', type='link')
  
      def install(self, spec, prefix):
          mkdirp(prefix.bin)
          mkdirp(prefix.share.man.man1)
          install('tabix', prefix.bin)
          install('bgzip', prefix.bin)
          install('tabix.py', prefix.bin)
          install('tabix.1', prefix.share.man.man1)
          install('tabix.tex', prefix.share)
          install('TabixReader.java', prefix.bin)
          install('libtabix.a', prefix.lib)
          install_tree('perl', prefix.perl)
          install_tree('python', prefix.python)
  