text: /**
   * UGENE - Integrated Bioinformatics Tools.
   * Copyright (C) 2008-2020 UniPro <ugene@unipro.ru>
   * http://ugene.net
   *
   * This program is free software; you can redistribute it and/or
   * modify it under the terms of the GNU General Public License
   * as published by the Free Software Foundation; either version 2
   * of the License, or (at your option) any later version.
   *
   * This program is distributed in the hope that it will be useful,
   * but WITHOUT ANY WARRANTY; without even the implied warranty of
   * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
   * GNU General Public License for more details.
   *
   * You should have received a copy of the GNU General Public License
   * along with this program; if not, write to the Free Software
   * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston,
   * MA 02110-1301, USA.
   */
  
  #include "AnnotationUtilsTests.h"
  
  #include <QDomElement>
  
  #include <U2Core/AppContext.h>
  #include <U2Core/U1AnnotationUtils.h>
  #include <U2Core/U2Location.h>
  
  #include <U2Formats/GenbankLocationParser.h>
  
  namespace U2 {
  
  QList<XMLTestFactory *> AnnotationUtilsTests::createTestFactories() {
      QList<XMLTestFactory *> res;
      res.append(GTest_ShiftSequence::createFactory());
      return res;
  }
  
  void GTest_ShiftSequence::init(XMLTestFormat *tf, const QDomElement &el) {
      Q_UNUSED(tf);
      bool isOk;
      locationStringBefore = el.attribute("location-before");
      locationStringAfter = el.attribute("location-after");
      shift = el.attribute("shift").toInt(&isOk);
      if (!isOk) {
          setError("Failed to parse shift value");
          return;
      }
      sequenceLength = el.attribute("sequence-length").toInt(&isOk);
      if (!isOk) {
          setError("Failed to parse sequence length value");
      }
  }
  
  Task::ReportResult GTest_ShiftSequence::report() {
      U2Location locationBefore;
      auto parsingResult = Genbank::LocationParser::parseLocation(locationStringBefore.toLatin1(),
                                                                  locationStringBefore.length(),
                                                                  locationBefore,
                                                                  sequenceLength);
      if (parsingResult != Genbank::LocationParser::Success) {
          setError(QString("Failed to parse location before: ") + parsingResult);
          return ReportResult_Finished;
      }
      U2Location shiftedLocation = U1AnnotationUtils::shiftLocation(locationBefore, shift, sequenceLength);
      QString shiftedLocationString = U1AnnotationUtils::buildLocationString(*shiftedLocation.data());
      if (locationStringAfter != shiftedLocationString) {
          setError(QString("Expected :%1, got: %2").arg(locationStringAfter).arg(shiftedLocationString));
      }
      return ReportResult_Finished;
  }
  
  }    // namespace U2
  