text: Search.setIndex({docnames:["changelog","guide/index","index","install/index","license/index","tutos/index"],envversion:54,filenames:["changelog.rst","guide/index.md","index.rst","install/index.md","license/index.rst","tutos/index.md"],objects:{},objnames:{},objtypes:{},terms:{"100x":2,"10x":2,"default":[1,3],"function":2,"new":2,"while":2,AND:4,BUT:4,But:2,FOR:4,NOT:4,THE:4,The:[1,2,3,4,5],Then:[1,5],USE:4,Using:2,WITH:4,With:2,about:[],abov:4,academ:3,achiev:2,achr:[1,2,3,5],action:4,actual:[1,2,3],added:0,addition:2,address:2,advantag:[],after:[1,5],aggress:1,algebra:3,algorithm:2,all:4,allow:2,also:1,although:[],analysi:[1,2],ani:4,approach:3,architectur:[2,3],aris:4,artifici:2,assess:2,associ:4,assum:2,author:4,avoid:[1,2],balanc:[2,3],base:3,basic:2,becom:2,been:5,ben:4,binari:1,bind:[1,5],biolog:2,block:2,briefli:2,build:1,call:1,can:[1,2],card:[2,3],center:2,chain:2,changelog:2,charg:4,check:3,choic:2,claim:4,close:2,cobrapi:1,cobratoolbox:1,coeffici:2,come:3,complex:2,comput:2,condit:4,cone:2,connect:4,constrain:1,constraint:2,contatin:5,contract:4,converg:[2,5],convert:1,convertproblem:1,copi:4,copyright:4,core200warmup:5,core:[1,2],corner:2,correctli:5,correspond:1,could:2,coupl:1,cplex:[1,3],createwarmuppt:[1,5],csv:[1,5],cuda:[2,3],damag:4,deal:4,delien:1,depend:1,desactiv:1,dimens:1,distribut:[3,4],doc:0,document:4,done:1,due:2,dynam:[2,3],each:[1,2,5],easier:2,ecoli:2,ecoli_cor:[1,5],ecoli_core1000warmup:1,ecoli_core200warmup:5,ensur:3,equilibr:1,even:3,event:4,exampl:1,explor:2,express:4,extrem:2,fact:2,factor:2,fba:2,featur:0,file:[1,4,5],find:2,first:[2,3,5],fit:4,flux:2,follow:[1,4],format:1,foruml:2,free:[3,4],from:[3,4,5],furnish:4,gain:3,gcc:3,gener:5,genrat:2,get:2,gpu:[1,2,3],grant:4,greater:[2,5],greatli:2,gsl:3,guebila:4,guid:2,hand:2,has:5,have:1,help:2,here:[2,3],herebi:4,high:2,higher:3,hit:2,holder:4,hybrid:3,ibm:3,idl:2,implement:[2,3],impli:4,improv:[0,2],includ:4,index:2,input:1,instabl:[1,2],instal:[1,2,5],instanc:5,interest:[],its:2,kind:4,larg:[1,2],latest:3,launch:2,least:2,let:5,level:2,liabil:4,liabl:4,librari:3,licens:2,like:2,limit:4,linear:[2,3],linux:3,load:[2,3],local:2,make:[1,2,5],marouen:4,mat:1,mathemat:2,matlab:1,maxim:[1,2],mcmc:2,mean:1,memori:1,merchant:4,merg:4,metabol:[1,2,3,5],method:2,might:2,minim:[1,2],minimum:1,mit:4,model:[1,2,3,5],modelnptswarmup:1,modern:2,modifi:4,modul:2,more:2,mpi:3,mpirun:[1,5],mps:[1,5],name:1,ncore:1,need:[1,3],nest:[2,3],next:0,nfile:1,non:1,none:[1,5],noninfring:4,notic:4,npoint:1,npt:1,nstep:1,nthread:1,number:[1,2,5],numer:[1,2],nvidia:[2,3],object:2,obtain:[1,4],obviou:2,omp_num_thread:[1,5],one:1,ones:2,openmp:3,openmpi:3,optim:2,option:1,order:2,organ:2,other:[1,2,4],otherwis:4,ouput:1,out:4,output:5,overal:2,own:1,page:2,parallel:3,paramet:1,parllel:[],particular:[2,4],particularli:2,per:[1,2],perform:[1,2],permiss:4,permit:4,person:4,phenotyp:2,pick:5,point:[2,5],popular:2,portion:4,possibl:2,power:2,preprocess:2,previou:2,previous:5,problem:2,proce:2,procedur:2,process:[1,2,3,5],program:2,provid:[1,2,4],publish:4,purpos:4,question:2,random:2,randomli:2,reaction:1,reduc:2,releas:0,repeat:2,replac:1,represent:2,requir:2,restrict:4,result:2,right:4,root:1,run:2,sai:5,same:2,sampl:2,samplng:[],save:[1,2],scaind:1,scale:1,search:2,sell:4,sequenti:3,set:2,shall:4,share:1,similar:2,slow:2,slower:2,sm_35:3,softwar:[1,2,3,4],solut:[1,2,5],solv:2,some:2,space:[1,2,5],spec:[2,3],speed:[2,3],start:[2,3,5],startign:3,step:[1,2,3,5],store:1,structur:0,subject:[2,4],sublicens:4,substanti:4,support:0,sur:5,sure:5,svd:3,system:[2,3],take:[1,2],talk:[],teh:1,than:5,thi:[1,2,3,4],thread:1,through:[1,2,3],tightli:1,time:[1,2],tool:[2,3],tort:4,total:5,tutori:2,twice:2,two:[1,2,3,5],unbias:2,under:[2,4],unfeas:2,uniform:2,ups:3,usag:2,use:[1,2,3,4],used:3,user:2,uses:[2,3],using:[1,2,5],usual:1,valu:1,varaibl:1,variabl:1,vector:2,version:[2,3],vfwarmup:[1,3,5],warmup:[2,5],warmuppoint:1,warranti:4,when:2,where:1,whether:4,which:[1,2],whom:4,wish:1,within:1,without:4,work:2,worker:2,written:5,you:[1,2,5],your:[1,3]},titles:["Changelog","Usage guide","Introduction","Installation guide","License","Tutorials"],titleterms:{approach:2,changelog:0,construct:2,content:2,core:5,ecoli:5,gener:[1,2,3],guid:[1,3],indic:2,instal:3,introduct:2,licens:4,parallel:2,point:[1,3],requir:3,sampl:[1,3,5],tabl:2,tutori:5,usag:1,warmup:[1,3]}})