text: /* tracealign
   *
   */
  #ifndef TRACEALIGN_INCLUDED
  #define TRACEALIGN_INCLUDED
  
  
  #include <stdio.h>		/* FILE */
  
  #include "easel.h"
  #include "esl_msa.h"
  #include "esl_random.h"
  #include "esl_tree.h"
  
  #include "e2.h"
  #include "e2_profilesq.h"
  #include "e2_msa.h"
  
  extern int e2_Tracealign(char *msaname, ESL_TREE *T, PSQ **sq, E2_TRACE **tr, ESL_MSA **ret_msa, E2_ALI e2ali, char *errbuf, int verbose);
  extern int e2_TracealignSeqs(E2_TRACE *tr, PSQ *sql, PSQ *sqr, int a_idx, int dl_idx, int dr_idx, ESL_MSA *msa, char *errbuf, int verbose);
  
  #endif /*TREACEALIGN_INCLUDED*/
  
  
  /************************************************************
   * @LICENSE@
   ************************************************************/
  