text: #  ENVISIoN
  #
  #  Copyright (c) 2018 Jesper Ericsson
  #  All rights reserved.
  #
  #  Redistribution and use in source and binary forms, with or without
  #  modification, are permitted provided that the following conditions are met:
  #
  #  1. Redistributions of source code must retain the above copyright notice, this
  #  list of conditions and the following disclaimer.
  #  2. Redistributions in binary form must reproduce the above copyright notice,
  #  this list of conditions and the following disclaimer in the documentation
  #  and/or other materials provided with the distribution.
  #
  #  THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
  #  ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
  #  WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
  #  DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
  #  ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
  #  (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
  #  LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
  #  ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
  #  (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
  #  SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
  #
  ##############################################################################################
  
  # CONFIGURE FILE PATHS HERE
  
  # Path to your envision installation
  PATH_TO_ENVISION = "C:/Users/Lina/ENVISIoN2/envision"
  
  # Path to the vasp output directory you wish to visualise
  PATH_TO_VASP_CALC = "C:/Users/Lina/ENVISIoN2/data/BCC-Cu"
  
  # Path to where you want to save the resulting hdf5 file 
  PATH_TO_HDF5 = "C:/Users/Lina/ENVISIoN2/unitcelldemo.hdf5"
  
  import os, sys, inspect, inviwopy
  sys.path.append(PATH_TO_ENVISION)
  import envisionpy
  import envisionpy.hdf5parser
  from envisionpy.processor_network.UnitcellNetworkHandler import UnitcellNetworkHandler
  
  # Parse for charge density visualisation.
  envisionpy.hdf5parser.unitcell(PATH_TO_HDF5, PATH_TO_VASP_CALC)
  
  # Initialize inviwo network
  inviwopy.app.network.clear()
  networkHandler = UnitcellNetworkHandler(PATH_TO_HDF5, inviwopy.app)
  
  networkHandler.set_atom_radius(1)