text: # Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
  # Spack Project Developers. See the top-level COPYRIGHT file for details.
  #
  # SPDX-License-Identifier: (Apache-2.0 OR MIT)
  
  from spack import *
  
  
  class RLumi(RPackage):
      """The lumi package provides an integrated solution for the Illumina
      microarray data analysis. It includes functions of Illumina BeadStudio
      (GenomeStudio) data input, quality control, BeadArray-specific variance
      stabilization, normalization and gene annotation at the probe level. It
      also includes the functions of processing Illumina methylation microarrays,
      especially Illumina Infinium methylation microarrays."""
  
      homepage = "https://bioconductor.org/packages/release/bioc/html/lumi.html"
      git      = "https://git.bioconductor.org/packages/lumi"
  
      version('2.38.0', commit='321d480d44ce9a0c02ce5af1bddc1f549abdea59')
  
      depends_on('r@2.10:', type=('build', 'run'))
      depends_on('r-biobase@2.5.5:', type=('build', 'run'))
      depends_on('r-affy@1.23.4:', type=('build', 'run'))
      depends_on('r-methylumi@2.3.2:', type=('build', 'run'))
      depends_on('r-genomicfeatures', type=('build', 'run'))
      depends_on('r-genomicranges', type=('build', 'run'))
      depends_on('r-annotate', type=('build', 'run'))
      depends_on('r-lattice', type=('build', 'run'))
      depends_on('r-mgcv@1.4-0:', type=('build', 'run'))
      depends_on('r-nleqslv', type=('build', 'run'))
      depends_on('r-kernsmooth', type=('build', 'run'))
      depends_on('r-preprocesscore', type=('build', 'run'))
      depends_on('r-rsqlite', type=('build', 'run'))
      depends_on('r-dbi', type=('build', 'run'))
      depends_on('r-annotationdbi', type=('build', 'run'))
      depends_on('r-mass', type=('build', 'run'))
  