text: /**
   * UGENE - Integrated Bioinformatics Tools.
   * Copyright (C) 2008-2020 UniPro <ugene@unipro.ru>
   * http://ugene.net
   *
   * This program is free software; you can redistribute it and/or
   * modify it under the terms of the GNU General Public License
   * as published by the Free Software Foundation; either version 2
   * of the License, or (at your option) any later version.
   *
   * This program is distributed in the hope that it will be useful,
   * but WITHOUT ANY WARRANTY; without even the implied warranty of
   * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
   * GNU General Public License for more details.
   *
   * You should have received a copy of the GNU General Public License
   * along with this program; if not, write to the Free Software
   * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston,
   * MA 02110-1301, USA.
   */
  
  #include "SmithWatermanResult.h"
  
  namespace U2 {
  
  //////////////////////////////////////////////////////////////////////////
  /// SmithWatermanResult
  //////////////////////////////////////////////////////////////////////////
  
  SharedAnnotationData SmithWatermanResult::toAnnotation(const QString &name) const {
      SharedAnnotationData data(new AnnotationData);
      data->name = name;
      data->location->regions << refSubseq;
      if (isJoined) {
          data->location->regions << refJoinedSubseq;
      }
      data->setStrand(strand);
      data->qualifiers.append(U2Qualifier("score", QString::number(score)));
      return data;
  }
  
  bool SmithWatermanResult::operator<(const SmithWatermanResult &op1) const {
      return score < op1.score;
  }
  
  //////////////////////////////////////////////////////////////////////////
  /// SmithWatermanResultListener
  //////////////////////////////////////////////////////////////////////////
  
  SmithWatermanResultListener::~SmithWatermanResultListener() {
  }
  
  void SmithWatermanResultListener::pushResult(const SmithWatermanResult &r) {
      result.append(r);
  }
  
  void SmithWatermanResultListener::pushResult(const QList<SmithWatermanResult> &r) {
      result.append(r);
  }
  
  QList<SmithWatermanResult> SmithWatermanResultListener::popResults() {
      QList<SmithWatermanResult> res = result;
      result.clear();
      return res;
  }
  
  QList<SmithWatermanResult> SmithWatermanResultListener::getResults() const {
      return result;
  }
  
  }    // namespace U2
  