text: // ==========================================================================
  //                 SeqAn - The Library for Sequence Analysis
  // ==========================================================================
  // Copyright (c) 2006-2013, Knut Reinert, FU Berlin
  // All rights reserved.
  //
  // Redistribution and use in source and binary forms, with or without
  // modification, are permitted provided that the following conditions are met:
  //
  //     * Redistributions of source code must retain the above copyright
  //       notice, this list of conditions and the following disclaimer.
  //     * Redistributions in binary form must reproduce the above copyright
  //       notice, this list of conditions and the following disclaimer in the
  //       documentation and/or other materials provided with the distribution.
  //     * Neither the name of Knut Reinert or the FU Berlin nor the names of
  //       its contributors may be used to endorse or promote products derived
  //       from this software without specific prior written permission.
  //
  // THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
  // AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
  // IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
  // ARE DISCLAIMED. IN NO EVENT SHALL KNUT REINERT OR THE FU BERLIN BE LIABLE
  // FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
  // DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
  // SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
  // CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
  // LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
  // OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
  // DAMAGE.
  //
  // ==========================================================================
  // Author: Manuel Holtgrewe <manuel.holtgrewe@fu-berlin.de>
  // ==========================================================================
  // Facade header for module bam_io.
  // ==========================================================================
  
  #ifndef CORE_INCLUDE_SEQAN_BAM_IO_H_
  #define CORE_INCLUDE_SEQAN_BAM_IO_H_
  
  // ===========================================================================
  // Prerequisites.
  // ===========================================================================
  
  #include <seqan/basic.h>
  #include <seqan/file.h>
  #include <seqan/sequence.h>
  #include <seqan/stream.h>
  #include <seqan/align.h>
  #include <seqan/misc/misc_name_store_cache.h>
  
  // ===========================================================================
  // Data Structures & Conversion.
  // ===========================================================================
  
  #include <seqan/bam_io/bam_io_context.h>
  #include <seqan/bam_io/cigar.h>
  #include <seqan/bam_io/bam_alignment_record.h>
  #include <seqan/bam_io/bam_header_record.h>
  #include <seqan/bam_io/bam_sam_conversion.h>
  #include <seqan/bam_io/bam_tags_dict.h>
  
  // ===========================================================================
  // Actual I/O Code.
  // ===========================================================================
  
  #include <seqan/bam_io/read_sam.h>
  #include <seqan/bam_io/write_sam.h>
  
  // BAM I/O is only available when ZLIB is available (and thus the BGz Stream).
  #if SEQAN_HAS_ZLIB
  #include <seqan/bam_io/read_bam.h>
  #include <seqan/bam_io/write_bam.h>
  #endif  // #if SEQAN_HAS_ZLIB
  
  // ===========================================================================
  // BAM Index Related.
  // ===========================================================================
  
  // BAM indices are only available when ZLIB is available.
  #if SEQAN_HAS_ZLIB
  #include <seqan/bam_io/bam_index_base.h>
  #include <seqan/bam_io/bam_index_bai.h>
  #endif  // #if SEQAN_HAS_ZLIB
  
  // ===========================================================================
  // Utility Routines.
  // ===========================================================================
  
  #include <seqan/bam_io/bam_alignment_record_util.h>
  
  // ===========================================================================
  // Easy BAM / SAM I/O.
  // ===========================================================================
  
  #include <seqan/bam_io/xam_reader.h>
  #if SEQAN_HAS_ZLIB
  #include <seqan/bam_io/bam_reader.h>
  #endif  // #if SEQAN_HAS_ZLIB
  #include <seqan/bam_io/sam_reader.h>
  
  #include <seqan/bam_io/xam_writer.h>
  #if SEQAN_HAS_ZLIB
  #include <seqan/bam_io/bam_writer.h>
  #endif  // #if SEQAN_HAS_ZLIB
  #include <seqan/bam_io/sam_writer.h>
  
  #include <seqan/bam_io/bam_stream.h>
  
  #endif  // CORE_INCLUDE_SEQAN_BAM_IO_H_
  