text: /**
   * UGENE - Integrated Bioinformatics Tools.
   * Copyright (C) 2008-2020 UniPro <ugene@unipro.ru>
   * http://ugene.net
   *
   * This program is free software; you can redistribute it and/or
   * modify it under the terms of the GNU General Public License
   * as published by the Free Software Foundation; either version 2
   * of the License, or (at your option) any later version.
   *
   * This program is distributed in the hope that it will be useful,
   * but WITHOUT ANY WARRANTY; without even the implied warranty of
   * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
   * GNU General Public License for more details.
   *
   * You should have received a copy of the GNU General Public License
   * along with this program; if not, write to the Free Software
   * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston,
   * MA 02110-1301, USA.
   */
  
  #ifndef _U2_GFFRAD_SUPPORT_TASK_H_
  #define _U2_GFFRAD_SUPPORT_TASK_H_
  
  #include <U2Core/ExternalToolRunTask.h>
  #include <U2Core/Task.h>
  #include <U2Core/U2IdTypes.h>
  
  namespace U2 {
  
  class GffreadSettings {
  public:
      QString transcriptsUrl;    // GTF
      QString genomeUrl;    // FASTA (mutli-FASTA)
      QString outputUrl;    // FASTA
  
      QStringList getArguments() const;
  };
  
  class GffreadSupportTask : public ExternalToolSupportTask {
      Q_OBJECT
  public:
      GffreadSupportTask(const GffreadSettings &settings);
  
      void prepare();
      QString result() const;
  
  private:
      void checkFormat(const QString &url, const DocumentFormatId &target);
  
  private:
      GffreadSettings settings;
  };
  
  }    // namespace U2
  
  #endif    // _U2_GFFRAD_SUPPORT_TASK_H_
  