text: # Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
  # Spack Project Developers. See the top-level COPYRIGHT file for details.
  #
  # SPDX-License-Identifier: (Apache-2.0 OR MIT)
  
  from spack import *
  
  
  class RRtracklayer(RPackage):
      """R interface to genome annotation files and the UCSC genome browser.
  
         Extensible framework for interacting with multiple genome browsers
         (currently UCSC built-in) and manipulating annotation tracks in various
         formats (currently GFF, BED, bedGraph, BED15, WIG, BigWig and 2bit
         built-in). The user may export/import tracks to/from the supported
         browsers, as well as query and modify the browser state, such as the
         current viewport."""
  
      bioc = "rtracklayer"
  
      version('1.54.0', commit='04cdd75521a8364e67a49d7352500dd4a3e83c55')
      version('1.50.0', commit='d2e61f72ff5d5a94c2c487ba108a37f23bfcc1e6')
      version('1.44.4', commit='aec96e85daf53b5c5eb2e89250d2755352be4de3')
      version('1.42.2', commit='76702f671faea736807d54aeecfbadcd152d94c5')
      version('1.40.6', commit='ba9a6e711504a702147383bc7abfcc36eb304df7')
      version('1.38.3', commit='f20db703c09dc7e808c09e9b78c15aec9e546248')
      version('1.36.6', commit='8c0ac7230f94e0c5a981acbb178c8de70e968131')
  
      depends_on('r@3.3:', type=('build', 'run'))
      depends_on('r-genomicranges@1.21.20:', type=('build', 'run'))
      depends_on('r-genomicranges@1.37.2:', type=('build', 'run'), when='@1.50.0:')
      depends_on('r-xml@1.98-0:', type=('build', 'run'))
      depends_on('r-biocgenerics@0.13.8:', type=('build', 'run'))
      depends_on('r-biocgenerics@0.25.1:', type=('build', 'run'), when='@1.40.6:')
      depends_on('r-biocgenerics@0.35.3:', type=('build', 'run'), when='@1.50.0:')
      depends_on('r-s4vectors@0.13.13:', type=('build', 'run'))
      depends_on('r-s4vectors@0.17.25:', type=('build', 'run'), when='@1.40.6:')
      depends_on('r-s4vectors@0.19.22:', type=('build', 'run'), when='@1.42.2:')
      depends_on('r-s4vectors@0.23.18:', type=('build', 'run'), when='@1.50.0:')
      depends_on('r-iranges@2.3.7:', type=('build', 'run'))
      depends_on('r-iranges@2.11.12:', type=('build', 'run'), when='@1.38.3:')
      depends_on('r-iranges@2.13.13:', type=('build', 'run'), when='@1.40.6:')
      depends_on('r-xvector@0.9.4:', type=('build', 'run'))
      depends_on('r-xvector@0.19.7:', type=('build', 'run'), when='@1.40.6:')
      depends_on('r-genomeinfodb@1.3.14:', type=('build', 'run'))
      depends_on('r-genomeinfodb@1.15.2:', type=('build', 'run'), when='@1.40.6:')
      depends_on('r-biostrings@2.43.7:', type=('build', 'run'))
      depends_on('r-biostrings@2.47.6:', type=('build', 'run'), when='@1.40.6:')
      depends_on('r-zlibbioc', type=('build', 'run'))
      depends_on('r-rcurl@1.4-2:', type=('build', 'run'))
      depends_on('r-rsamtools@1.17.8:', type=('build', 'run'))
      depends_on('r-rsamtools@1.31.2:', type=('build', 'run'), when='@1.40.6:')
      depends_on('r-genomicalignments@1.5.4:', type=('build', 'run'))
      depends_on('r-genomicalignments@1.15.6:', type=('build', 'run'), when='@1.40.6:')
      depends_on('r-biocio', type=('build', 'run'), when='@1.54.0:')
      depends_on('r-restfulr@0.0.13:', type=('build', 'run'), when='@1.54.0:')
  