text: // Authors: Korbinian Schneeberger and Joerg Hagmann
  // Copyright (C) 2008 by Max-Planck Institute for Developmental Biology, Tuebingen, Germany
  
  #include "pmindex.h"
  
  int usage() {
  #ifdef GM
  	printf("\ngmindex v%s\n", VERSION);
  #else
  	printf("\npmindex v%s\n", VERSION);
  #endif
  	printf("developed by Korbinian Schneeberger, Stephan Ossowski and Joerg Hagmann\n");
  	printf("Max Planck Institute for Developmental Biology, Tübingen, Germany, 2008\n\n");
  #ifdef GM
  	printf("USAGE: gmindex [options]\n");
  #else
          printf("USAGE: pmindex [options]\n");
  #endif
  	printf("\n");
  	printf("mandatory:\n");
  	printf(" -i STRING  input fastafile\n");
  	//printf(" -x STRING  index filename\n");
  	//printf(" -m STRING  map forward index filename\n");	
  	//printf(" -c STRING  map reverse index filename\n");	
  	//printf(" -t STRING  meta index filename\n");
  	printf("\n");
  	printf("optional:\n");
  	printf(" -s INT     seed length, range 5 to 13 (default: 12)\n");
  	printf(" -v         verbose (default: silent)\n");
  	printf("\n");
  
  	return 0;
  }
  