text: # Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
  # Spack Project Developers. See the top-level COPYRIGHT file for details.
  #
  # SPDX-License-Identifier: (Apache-2.0 OR MIT)
  
  from spack import *
  
  
  class Igv(Package):
      """The Integrative Genomics Viewer (IGV) is a high-performance visualization
      tool for interactive exploration of large, integrated genomic datasets.
      It supports a wide variety of data types, including array-based and
      next-generation sequence data, and genomic annotations."""
  
      homepage = "https://software.broadinstitute.org/software/igv/home"
      url      = "https://data.broadinstitute.org/igv/projects/downloads/2.8/IGV_Linux_2.8.0.zip"
  
      maintainers = ['snehring']
  
      version('2.8.0', sha256='897f683645b02c4da55424110b885071c2b9dd51bc180174e2a9b10788bf3257')
  
      # They ship with 11, out of an abundance of caution I'm going to restrict
      # it to just 11.
  
      depends_on('java@11:11.99', type='run')
  
      def install(self, spec, prefix):
          # Binary dist, just copy what we need, which should be the lib
          # directory, the two script, and the arg file
          install_tree('lib', prefix.lib)
          mkdirp(prefix.bin)
          filter_file('^prefix=.*$', 'prefix=' + prefix,
                      'igv.sh', 'igv_hidpi.sh')
          install('igv.sh', prefix.bin)
          install('igv_hidpi.sh', prefix.bin)
          install('igv.args', prefix)
  