text: // --------------------------------------------------------------------------
  //                   OpenMS -- Open-Source Mass Spectrometry
  // --------------------------------------------------------------------------
  // Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
  // ETH Zurich, and Freie Universitaet Berlin 2002-2018.
  //
  // This software is released under a three-clause BSD license:
  //  * Redistributions of source code must retain the above copyright
  //    notice, this list of conditions and the following disclaimer.
  //  * Redistributions in binary form must reproduce the above copyright
  //    notice, this list of conditions and the following disclaimer in the
  //    documentation and/or other materials provided with the distribution.
  //  * Neither the name of any author or any participating institution
  //    may be used to endorse or promote products derived from this software
  //    without specific prior written permission.
  // For a full list of authors, refer to the file AUTHORS.
  // --------------------------------------------------------------------------
  // THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
  // AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
  // IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
  // ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
  // INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
  // EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
  // PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
  // OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
  // WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
  // OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
  // ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
  //
  // --------------------------------------------------------------------------
  // $Maintainer: Timo Sachsenberg $
  // $Authors: Andreas Bertsch $
  // --------------------------------------------------------------------------
  
  #include <OpenMS/CONCEPT/ClassTest.h>
  #include <OpenMS/test_config.h>
  
  ///////////////////////////
  #include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmMRM.h>
  ///////////////////////////
  
  #include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinder.h>
  #include <OpenMS/FORMAT/MzMLFile.h>
  
  using namespace OpenMS;
  using namespace std;
  
  START_TEST(FeatureFinderAlgorithmMRM, "$Id$")
  
  /////////////////////////////////////////////////////////////
  /////////////////////////////////////////////////////////////
  
  FeatureFinderAlgorithmMRM* ptr = nullptr;
  FeatureFinderAlgorithmMRM* nullPointer = nullptr;
  FeatureFinderAlgorithm* ffA_nullPointer = nullptr;
  
  START_SECTION(FeatureFinderAlgorithmMRM())
  {
    ptr = new FeatureFinderAlgorithmMRM();
  	TEST_NOT_EQUAL(ptr, nullPointer)
  }
  END_SECTION
  
  START_SECTION(~FeatureFinderAlgorithmMRM())
  {
  	delete ptr;
  }
  END_SECTION
  
  ptr = new FeatureFinderAlgorithmMRM();
  
  START_SECTION((virtual void run()))
  {
  	FeatureFinder ff;
    ff.setLogType(ProgressLogger::NONE);
  
    PeakMap exp;
  	MzMLFile().load(OPENMS_GET_TEST_DATA_PATH("FeatureFinderAlgorithmMRM_input.mzML"), exp);
  
  	FeatureMap features, seeds;
  	Param ff_param(ptr->getParameters());
  	ff.run("mrm", exp, features, ff_param, seeds);
  
  	TEST_EQUAL(exp.getChromatograms().size(), 3)
  
  	FeatureMap new_features;
  	for (Size i = 0; i != features.size(); ++i)
  	{
  		if (features[i].getQuality(0) > 0.99)
  		{
  			new_features.push_back(features[i]);
  		}
  	}
  
  	TEST_EQUAL(new_features.size(), 3)
  
  	for (Size i = 0; i != new_features.size(); ++i)
  	{
  		TEST_EQUAL(new_features[i].getIntensity() > 100000, true)
  	}
  }
  END_SECTION
  
  START_SECTION((static FeatureFinderAlgorithm<PeakType>* create()))
  {
    FeatureFinderAlgorithm* ptr2 = nullptr;
    ptr2 = FeatureFinderAlgorithmMRM::create();
    TEST_NOT_EQUAL(ptr2, ffA_nullPointer)
  }
  END_SECTION
  
  START_SECTION((static const String getProductName()))
  {
    TEST_STRING_EQUAL(ptr->getProductName(), "mrm")
  }
  END_SECTION
  
  delete ptr;
  
  /////////////////////////////////////////////////////////////
  /////////////////////////////////////////////////////////////
  END_TEST
  
  
  
  