text: /* cnpSebat.c was originally generated by the autoSql program, which also 
   * generated cnpSebat.h and cnpSebat.sql.  This module links the database and
   * the RAM representation of objects. */
  
  #include "common.h"
  #include "linefile.h"
  #include "dystring.h"
  #include "jksql.h"
  #include "cnpSebat.h"
  
  static char const rcsid[] = "$Id: cnpSebat.c,v 1.1 2005/07/10 02:02:54 daryl Exp $";
  
  void cnpSebatStaticLoad(char **row, struct cnpSebat *ret)
  /* Load a row from cnpSebat table into ret.  The contents of ret will
   * be replaced at the next call to this function. */
  {
  
  ret->chrom = row[0];
  ret->chromStart = sqlUnsigned(row[1]);
  ret->chromEnd = sqlUnsigned(row[2]);
  ret->name = row[3];
  ret->probes = sqlUnsigned(row[4]);
  ret->individuals = sqlUnsigned(row[5]);
  }
  
  struct cnpSebat *cnpSebatLoad(char **row)
  /* Load a cnpSebat from row fetched with select * from cnpSebat
   * from database.  Dispose of this with cnpSebatFree(). */
  {
  struct cnpSebat *ret;
  
  AllocVar(ret);
  ret->chrom = cloneString(row[0]);
  ret->chromStart = sqlUnsigned(row[1]);
  ret->chromEnd = sqlUnsigned(row[2]);
  ret->name = cloneString(row[3]);
  ret->probes = sqlUnsigned(row[4]);
  ret->individuals = sqlUnsigned(row[5]);
  return ret;
  }
  
  struct cnpSebat *cnpSebatLoadAll(char *fileName) 
  /* Load all cnpSebat from a whitespace-separated file.
   * Dispose of this with cnpSebatFreeList(). */
  {
  struct cnpSebat *list = NULL, *el;
  struct lineFile *lf = lineFileOpen(fileName, TRUE);
  char *row[6];
  
  while (lineFileRow(lf, row))
      {
      el = cnpSebatLoad(row);
      slAddHead(&list, el);
      }
  lineFileClose(&lf);
  slReverse(&list);
  return list;
  }
  
  struct cnpSebat *cnpSebatLoadAllByChar(char *fileName, char chopper) 
  /* Load all cnpSebat from a chopper separated file.
   * Dispose of this with cnpSebatFreeList(). */
  {
  struct cnpSebat *list = NULL, *el;
  struct lineFile *lf = lineFileOpen(fileName, TRUE);
  char *row[6];
  
  while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
      {
      el = cnpSebatLoad(row);
      slAddHead(&list, el);
      }
  lineFileClose(&lf);
  slReverse(&list);
  return list;
  }
  
  struct cnpSebat *cnpSebatLoadByQuery(struct sqlConnection *conn, char *query)
  /* Load all cnpSebat from table that satisfy the query given.  
   * Where query is of the form 'select * from example where something=something'
   * or 'select example.* from example, anotherTable where example.something = 
   * anotherTable.something'.
   * Dispose of this with cnpSebatFreeList(). */
  {
  struct cnpSebat *list = NULL, *el;
  struct sqlResult *sr;
  char **row;
  
  sr = sqlGetResult(conn, query);
  while ((row = sqlNextRow(sr)) != NULL)
      {
      el = cnpSebatLoad(row);
      slAddHead(&list, el);
      }
  slReverse(&list);
  sqlFreeResult(&sr);
  return list;
  }
  
  void cnpSebatSaveToDb(struct sqlConnection *conn, struct cnpSebat *el, char *tableName, int updateSize)
  /* Save cnpSebat as a row to the table specified by tableName. 
   * As blob fields may be arbitrary size updateSize specifies the approx size
   * of a string that would contain the entire query. Arrays of native types are
   * converted to comma separated strings and loaded as such, User defined types are
   * inserted as NULL. Note that strings must be escaped to allow insertion into the database.
   * For example "autosql's features include" --> "autosql\'s features include" 
   * If worried about this use cnpSebatSaveToDbEscaped() */
  {
  struct dyString *update = newDyString(updateSize);
  dyStringPrintf(update, "insert into %s values ( '%s',%u,%u,'%s',%u,%u)", 
  	tableName,  el->chrom,  el->chromStart,  el->chromEnd,  el->name,  el->probes,  el->individuals);
  sqlUpdate(conn, update->string);
  freeDyString(&update);
  }
  
  void cnpSebatSaveToDbEscaped(struct sqlConnection *conn, struct cnpSebat *el, char *tableName, int updateSize)
  /* Save cnpSebat as a row to the table specified by tableName. 
   * As blob fields may be arbitrary size updateSize specifies the approx size.
   * of a string that would contain the entire query. Automatically 
   * escapes all simple strings (not arrays of string) but may be slower than cnpSebatSaveToDb().
   * For example automatically copies and converts: 
   * "autosql's features include" --> "autosql\'s features include" 
   * before inserting into database. */ 
  {
  struct dyString *update = newDyString(updateSize);
  char  *chrom, *name;
  chrom = sqlEscapeString(el->chrom);
  name = sqlEscapeString(el->name);
  
  dyStringPrintf(update, "insert into %s values ( '%s',%u,%u,'%s',%u,%u)", 
  	tableName,  chrom, el->chromStart , el->chromEnd ,  name, el->probes , el->individuals );
  sqlUpdate(conn, update->string);
  freeDyString(&update);
  freez(&chrom);
  freez(&name);
  }
  
  struct cnpSebat *cnpSebatCommaIn(char **pS, struct cnpSebat *ret)
  /* Create a cnpSebat out of a comma separated string. 
   * This will fill in ret if non-null, otherwise will
   * return a new cnpSebat */
  {
  char *s = *pS;
  
  if (ret == NULL)
      AllocVar(ret);
  ret->chrom = sqlStringComma(&s);
  ret->chromStart = sqlUnsignedComma(&s);
  ret->chromEnd = sqlUnsignedComma(&s);
  ret->name = sqlStringComma(&s);
  ret->probes = sqlUnsignedComma(&s);
  ret->individuals = sqlUnsignedComma(&s);
  *pS = s;
  return ret;
  }
  
  void cnpSebatFree(struct cnpSebat **pEl)
  /* Free a single dynamically allocated cnpSebat such as created
   * with cnpSebatLoad(). */
  {
  struct cnpSebat *el;
  
  if ((el = *pEl) == NULL) return;
  freeMem(el->chrom);
  freeMem(el->name);
  freez(pEl);
  }
  
  void cnpSebatFreeList(struct cnpSebat **pList)
  /* Free a list of dynamically allocated cnpSebat's */
  {
  struct cnpSebat *el, *next;
  
  for (el = *pList; el != NULL; el = next)
      {
      next = el->next;
      cnpSebatFree(&el);
      }
  *pList = NULL;
  }
  
  void cnpSebatOutput(struct cnpSebat *el, FILE *f, char sep, char lastSep) 
  /* Print out cnpSebat.  Separate fields with sep. Follow last field with lastSep. */
  {
  if (sep == ',') fputc('"',f);
  fprintf(f, "%s", el->chrom);
  if (sep == ',') fputc('"',f);
  fputc(sep,f);
  fprintf(f, "%u", el->chromStart);
  fputc(sep,f);
  fprintf(f, "%u", el->chromEnd);
  fputc(sep,f);
  if (sep == ',') fputc('"',f);
  fprintf(f, "%s", el->name);
  if (sep == ',') fputc('"',f);
  fputc(sep,f);
  fprintf(f, "%u", el->probes);
  fputc(sep,f);
  fprintf(f, "%u", el->individuals);
  fputc(lastSep,f);
  }
  
  /* -------------------------------- End autoSql Generated Code -------------------------------- */
  
  