text: # \HEADER\-------------------------------------------------------------------------
  #
  #  CONTENTS      : get file helper
  #
  #  DESCRIPTION   : none
  #
  #  RESTRICTIONS  : none
  #
  #  REQUIRES      : none
  #
  # ---------------------------------------------------------------------------------
  # Copyright (c) 2018-2021, Pay Giesselmann, Max Planck Institute for Molecular Genetics
  #
  # Permission is hereby granted, free of charge, to any person obtaining a copy
  # of this software and associated documentation files (the "Software"), to deal
  # in the Software without restriction, including without limitation the rights
  # to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
  # copies of the Software, and to permit persons to whom the Software is
  # furnished to do so, subject to the following conditions:
  #
  # The above copyright notice and this permission notice shall be included in all
  # copies or substantial portions of the Software.
  #
  # THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
  # IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
  # FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
  # AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
  # LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
  # OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
  # SOFTWARE.
  #
  # Written by Pay Giesselmann
  # ---------------------------------------------------------------------------------
  import os
  
  # flowcell and kit parsing
  #def get_ID(wildcards, config):
  #    fields = wildcards.runname.split(config['storage_runname']['delimiter'])
  #    return fields[config['storage_runname']['field_ID']]
  #
  #def get_flowcell(wildcards, config):
  #    fields = wildcards.runname.split(config['storage_runname']['delimiter'])
  #    if len(fields) > config['storage_runname']['field_flowcell'] and fields[config['storage_runname']['field_flowcell']] in ['FLO-MIN106', 'FLO-MIN107', 'FLO-PRO001', 'FLO-PRO002']:
  #        flowcell = fields[config['storage_runname']['field_flowcell']]
  #        # TODO fix as soon as albacore/guppy supports FLO-PRO002
  #        if flowcell == 'FLO-PRO002':
  #            flowcell = 'FLO-PRO001'
  #        # end
  #        return flowcell
  #    else:
  #        raise ValueError('Could not detect flowcell from ' + wildcards.runname)
  #
  #def get_kit(wildcards, config):
  #    fields = wildcards.runname.split(config['storage_runname']['delimiter'])
  #    if len(fields) > config['storage_runname']['field_kit']:
  #        return fields[config['storage_runname']['field_kit']]
  #    else:
  #        raise ValueError('Could not find sequencing kit in {runname}'.format(runname=wildcards.runname))
  