text: ##########################################################################################
  # !!!!!!!!!!!The 1AKI_prod.trr trajectory is too big and can't be included in the repo
  ##########################################################################################
  
  import os, sys
  import MDAnalysis as mda
  from MDAnalysis.analysis.base import AnalysisFromFunction
  from MDAnalysis.coordinates.memory import MemoryReader
  import pandas as pd
  from CodeEntropy.ClassCollection.PoseidonClass import Poseidon, Poseidon_mp
  
  
  def main():
      #hard coded for now
      wd = os.path.dirname(os.path.abspath(__file__))
      # loading files
      topo_file = os.path.join(wd,"data/1AKI_prod_60.tpr")
      traj_file = os.path.join(wd,"data/1AKI_prod_60.trr")
      # loading data into individual universe
      main = mda.Universe(topo_file, traj_file)
      poseidon_object = Poseidon(container=main, start=0, end=10, water=('SOL',), excludedResnames=("CL",), verbose=False)
      poseidon_object.run_analysis(level_list=['moleculeLevel', 'residLevel_resname', 'atomLevel', 'soluteContacts'], verbose=False)
  
  if __name__ == '__main__':
      main()
  