text: /* hgdpGeo.c was originally generated by the autoSql program, which also 
   * generated hgdpGeo.h and hgdpGeo.sql.  This module links the database and
   * the RAM representation of objects. */
  
  #include "common.h"
  #include "linefile.h"
  #include "dystring.h"
  #include "jksql.h"
  #include "hgdpGeo.h"
  
  static char const rcsid[] = "$Id: hgdpGeo.c,v 1.1 2009/02/07 00:02:59 angie Exp $";
  
  void hgdpGeoStaticLoad(char **row, struct hgdpGeo *ret)
  /* Load a row from hgdpGeo table into ret.  The contents of ret will
   * be replaced at the next call to this function. */
  {
  
  ret->chrom = row[0];
  ret->chromStart = sqlUnsigned(row[1]);
  ret->chromEnd = sqlUnsigned(row[2]);
  ret->name = row[3];
  ret->ancestralAllele = row[4][0];
  ret->derivedAllele = row[5][0];
  sqlFloatArray(row[6], ret->popFreqs, 53);
  }
  
  struct hgdpGeo *hgdpGeoLoad(char **row)
  /* Load a hgdpGeo from row fetched with select * from hgdpGeo
   * from database.  Dispose of this with hgdpGeoFree(). */
  {
  struct hgdpGeo *ret;
  
  AllocVar(ret);
  ret->chrom = cloneString(row[0]);
  ret->chromStart = sqlUnsigned(row[1]);
  ret->chromEnd = sqlUnsigned(row[2]);
  ret->name = cloneString(row[3]);
  ret->ancestralAllele = row[4][0];
  ret->derivedAllele = row[5][0];
  sqlFloatArray(row[6], ret->popFreqs, 53);
  return ret;
  }
  
  struct hgdpGeo *hgdpGeoLoadAll(char *fileName) 
  /* Load all hgdpGeo from a whitespace-separated file.
   * Dispose of this with hgdpGeoFreeList(). */
  {
  struct hgdpGeo *list = NULL, *el;
  struct lineFile *lf = lineFileOpen(fileName, TRUE);
  char *row[7];
  
  while (lineFileRow(lf, row))
      {
      el = hgdpGeoLoad(row);
      slAddHead(&list, el);
      }
  lineFileClose(&lf);
  slReverse(&list);
  return list;
  }
  
  struct hgdpGeo *hgdpGeoLoadAllByChar(char *fileName, char chopper) 
  /* Load all hgdpGeo from a chopper separated file.
   * Dispose of this with hgdpGeoFreeList(). */
  {
  struct hgdpGeo *list = NULL, *el;
  struct lineFile *lf = lineFileOpen(fileName, TRUE);
  char *row[7];
  
  while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
      {
      el = hgdpGeoLoad(row);
      slAddHead(&list, el);
      }
  lineFileClose(&lf);
  slReverse(&list);
  return list;
  }
  
  struct hgdpGeo *hgdpGeoCommaIn(char **pS, struct hgdpGeo *ret)
  /* Create a hgdpGeo out of a comma separated string. 
   * This will fill in ret if non-null, otherwise will
   * return a new hgdpGeo */
  {
  char *s = *pS;
  
  if (ret == NULL)
      AllocVar(ret);
  ret->chrom = sqlStringComma(&s);
  ret->chromStart = sqlUnsignedComma(&s);
  ret->chromEnd = sqlUnsignedComma(&s);
  ret->name = sqlStringComma(&s);
  sqlFixedStringComma(&s, &(ret->ancestralAllele), sizeof(ret->ancestralAllele));
  sqlFixedStringComma(&s, &(ret->derivedAllele), sizeof(ret->derivedAllele));
  {
  int i;
  s = sqlEatChar(s, '{');
  for (i=0; i<53; ++i)
      {
      ret->popFreqs[i] = sqlFloatComma(&s);
      }
  s = sqlEatChar(s, '}');
  s = sqlEatChar(s, ',');
  }
  *pS = s;
  return ret;
  }
  
  void hgdpGeoFree(struct hgdpGeo **pEl)
  /* Free a single dynamically allocated hgdpGeo such as created
   * with hgdpGeoLoad(). */
  {
  struct hgdpGeo *el;
  
  if ((el = *pEl) == NULL) return;
  freeMem(el->chrom);
  freeMem(el->name);
  freez(pEl);
  }
  
  void hgdpGeoFreeList(struct hgdpGeo **pList)
  /* Free a list of dynamically allocated hgdpGeo's */
  {
  struct hgdpGeo *el, *next;
  
  for (el = *pList; el != NULL; el = next)
      {
      next = el->next;
      hgdpGeoFree(&el);
      }
  *pList = NULL;
  }
  
  void hgdpGeoOutput(struct hgdpGeo *el, FILE *f, char sep, char lastSep) 
  /* Print out hgdpGeo.  Separate fields with sep. Follow last field with lastSep. */
  {
  if (sep == ',') fputc('"',f);
  fprintf(f, "%s", el->chrom);
  if (sep == ',') fputc('"',f);
  fputc(sep,f);
  fprintf(f, "%u", el->chromStart);
  fputc(sep,f);
  fprintf(f, "%u", el->chromEnd);
  fputc(sep,f);
  if (sep == ',') fputc('"',f);
  fprintf(f, "%s", el->name);
  if (sep == ',') fputc('"',f);
  fputc(sep,f);
  if (sep == ',') fputc('"',f);
  fprintf(f, "%c", el->ancestralAllele);
  if (sep == ',') fputc('"',f);
  fputc(sep,f);
  if (sep == ',') fputc('"',f);
  fprintf(f, "%c", el->derivedAllele);
  if (sep == ',') fputc('"',f);
  fputc(sep,f);
  {
  int i;
  if (sep == ',') fputc('{',f);
  for (i=0; i<53; ++i)
      {
      fprintf(f, "%g", el->popFreqs[i]);
      fputc(',', f);
      }
  if (sep == ',') fputc('}',f);
  }
  fputc(lastSep,f);
  }
  
  /* -------------------------------- End autoSql Generated Code -------------------------------- */
  
  