text: ##############################################################################
  # Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
  # Produced at the Lawrence Livermore National Laboratory.
  #
  # This file is part of Spack.
  # Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
  # LLNL-CODE-647188
  #
  # For details, see https://github.com/spack/spack
  # Please also see the NOTICE and LICENSE files for our notice and the LGPL.
  #
  # This program is free software; you can redistribute it and/or modify
  # it under the terms of the GNU Lesser General Public License (as
  # published by the Free Software Foundation) version 2.1, February 1999.
  #
  # This program is distributed in the hope that it will be useful, but
  # WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
  # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
  # conditions of the GNU Lesser General Public License for more details.
  #
  # You should have received a copy of the GNU Lesser General Public
  # License along with this program; if not, write to the Free Software
  # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
  ##############################################################################
  from spack import *
  
  
  class FrHit(Package):
      """An efficient algorithm for fragment recruitment for next generation
      sequences against microbial reference genomes."""
  
      homepage = "http://weizhong-lab.ucsd.edu/frhit"
      url      = "http://weizhong-lab.ucsd.edu/frhit/fr-hit-v0.7.1-2013-02-20.tar.gz"
  
      version('0.7.1-2013-02-20', '3e8ea41ba09ab0c13e9973fe6f493f96')
  
      depends_on('perl')
      depends_on('python@2.7:')
  
      # The patch adds the python interpreter to the beginning of the script
      # allowing it to be run directly without passing the entire path to the
      # script to python.
      patch('binning.patch')
  
      def install(self, spec, prefix):
          make()
  
          filter_file(
              r'#!/bin/env perl',
              '#!/usr/bin/env perl',
              'frhit2pairend.pl'
          )
          filter_file(
              r'#!/bin/env perl',
              '#!/usr/bin/env perl',
              'psl2sam.pl'
          )
  
          mkdirp(prefix.bin)
          install('fr-hit', prefix.bin)
          install('frhit2pairend.pl', prefix.bin)
          install('psl2sam.pl', prefix.bin)
          install('binning-1.1.1/bacteria_gitax.pkl', prefix.bin)
          install('binning-1.1.1/binning.py', prefix.bin)
          install('binning-1.1.1/tax.pkl', prefix.bin)
  