text: -- Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute
  -- Copyright [2016-2017] EMBL-European Bioinformatics Institute
  -- 
  -- Licensed under the Apache License, Version 2.0 (the "License");
  -- you may not use this file except in compliance with the License.
  -- You may obtain a copy of the License at
  -- 
  --      http://www.apache.org/licenses/LICENSE-2.0
  -- 
  -- Unless required by applicable law or agreed to in writing, software
  -- distributed under the License is distributed on an "AS IS" BASIS,
  -- WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
  -- See the License for the specific language governing permissions and
  -- limitations under the License.
  
  
  # populate the columns is_evidence and variation_set_id into the structural variation feature table
  ALTER TABLE structural_variation_feature ADD COLUMN is_evidence tinyint(1) DEFAULT 0 NOT NULL;
  
  
  # Add a column for variation_set_ids to strucutral_variation_feature
  ALTER TABLE `structural_variation_feature` ADD `variation_set_id` SET 
  ('1','2','3','4','5','6','7','8','9','10','11','12','13','14','15','16','17','18','19','20','21','22','23','24','25','26','27','28','29','30','31','32','33','34','35','36','37','38','39','40','41','42','43','44','45','46','47','48','49','50','51','52','53','54','55','56','57','58','59','60','61','62','63','64') NOT NULL DEFAULT '';
  # Add an index on the variation_set_id column
  ALTER TABLE `structural_variation_feature` ADD INDEX `variation_set_idx` (`variation_set_id`);
  
  
  # patch identifier
  INSERT INTO meta (species_id, meta_key, meta_value) VALUES (NULL,'patch', 'patch_65_66_c.sql|populate the columns is_evidence and variation_set_id into the structural variation feature table');
  