text: #!/usr/bin/env python3
  # -*- coding: utf-8 -*-
  
  """setup.py
  
  Setup configuration file for use with setuptools
  
  (c) The James Hutton Institute 2018-2019
  Author: Leighton Pritchard
  
  Contact:
  leighton.pritchard@hutton.ac.uk
  
  Leighton Pritchard,
  Information and Computing Sciences,
  James Hutton Institute,
  Errol Road,
  Invergowrie,
  Dundee,
  DD2 5DA,
  Scotland,
  UK
  
  The MIT License
  
  Copyright (c) 2018-2019 The James Hutton Institute
  
  Permission is hereby granted, free of charge, to any person obtaining a copy
  of this software and associated documentation files (the "Software"), to deal
  in the Software without restriction, including without limitation the rights
  to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
  copies of the Software, and to permit persons to whom the Software is
  furnished to do so, subject to the following conditions:
  
  The above copyright notice and this permission notice shall be included in
  all copies or substantial portions of the Software.
  
  THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
  IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
  FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
  AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
  LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
  OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
  THE SOFTWARE.
  """
  
  try:
      import distribute_setup
  
      distribute_setup.use_setuptools()
  except ImportError:
      pass
  
  import setuptools
  
  import os
  import sys
  import re
  
  # Get long description from README.md
  with open("README.md", "r") as dfh:
      long_description = dfh.read()
  
  # parse version from package/module without importing or evaluating the code
  with open("diagnostic_primers/__init__.py") as fh:
      for line in fh:
          m = re.search(r'^__version__ = "(?P<version>[^"]+)"$', line)
          if m:
              version = m.group("version")
              break
  
  if sys.version_info <= (3, 0):
      sys.stderr.write("ERROR: diagnostic_primers requires Python3 (exiting)\n")
      sys.exit(1)
  
  setuptools.setup(
      name="diagnostic_primers",
      version=version,
      author="Leighton Pritchard",
      author_email="leighton.pritchard@hutton.ac.uk",
      description=(
          "diagnostic_primers is a module providing tools for "
          "diagnostic qPCR and metabarcoding primer design.",
      ),
      long_description=long_description,
      license="MIT",
      keywords="bioinformatics PCR qPCR primers script",
      platforms="Posix; MacOS X",
      url="https://github.com/widdowquinn/find_differential_primers",
      download_url="https://github.com/widdowquinn/find_differential_primers/releases",
      entry_points={
          "console_scripts": ["pdp = diagnostic_primers.scripts.pdp_script:run_pdp_main"]
      },
      scripts=[
          "pdp.py",
          os.path.join("bin", "pdp_mafft_wrapper.py"),
          os.path.join("bin", "delta_filter_wrapper.py"),
      ],
      packages=[
          "diagnostic_primers",
          "diagnostic_primers/scripts",
          "diagnostic_primers/scripts/subcommands",
      ],
      install_requires=["biopython", "pandas", "plotly", "joblib", "tqdm", "pybedtools"],
      package_data={},
      classifiers=[
          "Development Status :: 5 - Production/Stable",
          "Environment :: Console",
          "Intended Audience :: Science/Research",
          "License :: OSI Approved :: GPLv3 License",
          "Operating System :: MacOS :: MacOS X",
          "Operating System :: POSIX :: Linux",
          "Programming Language :: Python",
          "Programming Language :: Python :: 3.5",
          "Topic :: Scientific/Engineering :: Bio-Informatics",
      ],
  )
  