text: # Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
  # Spack Project Developers. See the top-level COPYRIGHT file for details.
  #
  # SPDX-License-Identifier: (Apache-2.0 OR MIT)
  
  import glob
  
  from spack import *
  
  
  class PyMixedhtseq(PythonPackage):
      """HTSeq for mixed single and paired end reads"""
  
      homepage = "https://github.com/schae234/MixedHTSeq"
      url      = "https://github.com/schae234/MixedHTSeq/archive/v0.1.0.tar.gz"
  
      version('0.1.0', sha256='234689c8743ae2ba7ad13bc1809a5248184a4b8d16112d5413e09164ab67e157', deprecated=True)
  
      depends_on('python@2.5:2.8', type=('build', 'run'))
      depends_on('py-numpy', type=('build', 'run'))
      depends_on('py-htseq', type=('build', 'run'))
      depends_on('py-ipython', type=('build', 'run'))
      depends_on('py-pandas', type=('build', 'run'))
  
      depends_on('py-setuptools', type='build')
  
      @run_after('install')
      def install_scripts(self):
          shebang = '#!{0}\n'.format(self.spec['python'].command)
  
          for fname in glob.glob('scripts/*.py'):
              filter_file('^#!.*', '', fname)
              with open(fname, 'r') as orig:
                  fdata = orig.read()
              with open(fname, 'w') as new:
                  new.write(shebang + fdata)
              set_executable(fname)
  
          mkdirp(self.prefix.bin)
          install_tree('scripts', self.prefix.bin)
  