text: # Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
  # Spack Project Developers. See the top-level COPYRIGHT file for details.
  #
  # SPDX-License-Identifier: (Apache-2.0 OR MIT)
  
  from spack import *
  from os import symlink
  
  
  class Bridger(MakefilePackage):
      """Bridger : An Efficient De novo Transcriptome Assembler For
         RNA-Seq Data"""
  
      homepage = "https://sourceforge.net/projects/rnaseqassembly/"
      url      = "https://downloads.sourceforge.net/project/rnaseqassembly/Bridger_r2014-12-01.tar.gz"
  
      version('2014-12-01', sha256='8fbec8603ea8ad2162cbd0c658e4e0a4af6453bdb53310b4b7e0d112e40b5737')
  
      depends_on('boost')
      depends_on('perl', type='run')
  
      def install(self, spec, prefix):
          # bridger depends very much on perl scripts/etc in the source tree
          install_path = join_path(prefix, 'usr/local/bridger')
          mkdirp(install_path)
          install_tree('.', install_path)
  
          # symlink the init script to /bin
          mkdirp(prefix.bin)
          symlink(join_path(install_path, 'Bridger.pl'),
                  join_path(prefix.bin, 'Bridger.pl'))
  