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TOOLBOX","Install me","How to get started","List of updates","Load example data","Cross-disorder effect","Load summary statistics","Load connectivity data","Hub susceptibility model","Epicenter mapping","Spin permutation tests","Spin permutation tests","Grap theory","Gene expression data","Big Brain histology","Cytoarchitectonics","Disease-related genes","Visualization tools","enigmatoolbox.cross_disorder.cross_disorder_effect","enigmatoolbox.datasets.fetch_ahba","enigmatoolbox.datasets.getaffine","enigmatoolbox.datasets.load_conte69","enigmatoolbox.datasets.load_example_data","enigmatoolbox.datasets.load_fc","enigmatoolbox.datasets.load_fc_as_one","enigmatoolbox.datasets.load_fsa5","enigmatoolbox.datasets.load_mask","enigmatoolbox.datasets.load_sc","enigmatoolbox.datasets.load_sc_as_one","enigmatoolbox.datasets.load_subcortical","enigmatoolbox.datasets.load_summary_stats","enigmatoolbox.datasets.nfaces","enigmatoolbox.datasets.risk_genes","enigmatoolbox.datasets.write_cifti","enigmatoolbox.histology.bb_gradient_plot","enigmatoolbox.histology.bb_moments_raincloud","enigmatoolbox.histology.economo_koskinas_spider","enigmatoolbox.mesh.mesh_io.read_surface","enigmatoolbox.mesh.mesh_io.write_surface","enigmatoolbox.permutation_testing.centroid_extraction_sphere","enigmatoolbox.permutation_testing.perm_sphere_p","enigmatoolbox.permutation_testing.rotate_parcellation","enigmatoolbox.permutation_testing.shuf_test","enigmatoolbox.permutation_testing.spin_test","enigmatoolbox.plotting.surface_plotting.build_plotter","enigmatoolbox.plotting.surface_plotting.plot_cortical","enigmatoolbox.plotting.surface_plotting.plot_subcortical","enigmatoolbox.plotting.surface_plotting.plot_surf","enigmatoolbox.utils.parcellation.parcel_to_surface","enigmatoolbox.utils.parcellation.subcorticalvertices","enigmatoolbox.utils.parcellation.surface_to_parcel","enigmatoolbox.utils.useful.reorder_sctx","enigmatoolbox.utils.useful.zscore_matrix","List of every function","Matlab API | bb_gradient_plot","Matlab API | bb_moments_raincloud","Matlab API | centroid_extraction_sphere","Matlab API | cross_disorder_effect","Matlab API | economo_koskinas_spider","Matlab API | fetch_ahba","Matlab API | getaffine","Matlab API | load_example_data","Matlab API | load_fc","Matlab API | load_fc_as_one","Matlab API | load_sc","Matlab API | load_sc_as_one","Matlab API | load_summary_stats","Matlab API | nfaces","Matlab API | parcel_to_surface","Matlab API | perm_sphere_p","Matlab API | plot_cortical","Matlab API | plot_subcortical","Matlab API | reorder_sctx","Matlab API | risk_genes","Matlab API | rotate_parcellation","Matlab API | shuf_test","Matlab API | spin_test","Matlab API | surface_to_parcel","Matlab API | write_cifti","Matlab API | zscore_matrix","Matlab API","How to cite our toolbox","List of references","Thank you to our funders and collaborators! \ud83d\udc99","Import data","Vertexwise \u2194 parcellated data","Export data"],titleterms:{"22q11":6,"export":[53,80,86],"function":53,"import":[80,84],"new":3,"null":11,One:7,about:86,acknowledg:83,alreadi:17,analys:12,analysi:5,analyt:0,ani:0,api:[53,80],april:3,assess:11,atla:82,atrophi:[8,82],attent:6,autism:6,avail:6,base:82,bb_gradient_plot:[34,54],bb_moments_raincloud:[35,55],bigbrain:[14,53,82],bipolar:6,brain:86,build_plott:44,busi:86,can:6,caution:16,centroid_extraction_spher:[39,56],chang:86,cifti:[84,86],cite:81,cluster:12,coeffici:12,compat:0,compon:5,compuls:6,connect:[7,13,53,80,82],construct:12,conte69:85,core:0,correl:[5,8],cortic:[0,7,8,9,17],cover:85,cross:[5,53,80],cross_disord:[18,53],cross_disorder_effect:[18,57],csv:[84,86],curv:[84,86],cytoarchitecton:15,data:[0,4,6,7,13,17,53,80,82,84,85,86],dataset:[0,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,53,80,82],decemb:3,deficit:6,delet:6,depress:6,deriv:0,develop:0,diseas:[16,82],disord:[5,6,53,66,73,80],distribut:11,don:[17,85],dscalar:[84,86],dtseri:[84,86],economo:[15,53,82],economo_koskinas_spid:[36,58],effect:[5,53,80],enigma:[0,53,80,81,82],enigmatoolbox:[18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53],epicent:[9,82],epilepsi:6,exampl:4,express:[13,16,53,80,82],extract:16,februari:3,fetch:13,fetch_ahba:[19,59],find:6,forget:17,freesurf:[84,86],gene:[13,16,53,80,82],get:0,getaffin:[20,60,86],gifti:[84,86],gii:[84,86],got:[13,85],gradient:14,graph:12,gwa:82,histolog:[34,35,36,53,80],how:17,hub:[8,82],hyperact:6,individu:4,instal:1,internet:13,involv:0,januari:3,juli:3,june:3,know:13,koskina:[15,53,82],length:12,like:85,load:[4,7],load_conte69:21,load_example_data:[22,61],load_fc:[23,62],load_fc_as_on:[24,63],load_fsa5:25,load_mask:26,load_sc:[27,64],load_sc_as_on:[28,65],load_subcort:29,load_summary_stat:[30,66],macroscal:0,major:6,map:[0,9,16],march:3,matlab:80,matric:[7,53,80],matrix:[7,53,80],mention:17,mesh:[37,38,53],mesh_io:[37,38],mgh:[84,86],mgz:[84,86],micro:0,model:82,moment:14,multiscal:0,name:86,nan:13,network:82,neuroimag:0,nface:[31,67,86],nii:[84,86],note:2,novemb:3,obsess:6,octob:3,order:[4,53,80],page:12,parcel:[48,49,50,53,80,84,85],parcel_to_surfac:[48,68],path:12,perm_sphere_p:[40,69],permut:[10,11,53,80,82],permutation_test:[39,40,41,42,43,53],pleas:84,plot:[8,11,44,45,46,47,53,80],plot_cort:[45,70],plot_subcort:[46,71],plot_surf:47,preprocess:0,princip:5,problem:8,python:53,read:53,read_surfac:37,refer:82,region:4,relat:16,relax:85,reorder_sctx:[51,72],result:86,risk_gen:[32,73],rotat:17,rotate_parcel:[41,74],schizophrenia:6,score:[4,53,80],script:86,search:6,shuf:[53,80],shuf_test:[42,75],signific:11,site:4,slow:13,small:12,softwar:0,spectrum:6,spin:[10,11,53,80,82],spin_test:[43,76],statist:[0,6,11,14],step:0,stratif:[15,53],subcort:[0,4,7,8,9,17,53,80],subcorticalvertic:49,summari:6,surfac:[17,53,80,86],surface_plot:[44,45,46,47,53],surface_to_parcel:[50,77],suscept:8,syndrom:6,tabl:[6,84],templat:53,test:[10,11],theori:12,thi:[17,86],those:13,tool:0,toolbox:[0,81],transcriptom:16,tutori:0,txt:[84,86],under:12,usag:2,useful:[51,52],util:[48,49,50,51,52,53],ventricl:8,vertexwis:[84,85],visual:[0,16,17],von:[53,82],wanna:13,welcom:0,what:[3,86],where:13,workflow:0,world:12,write:53,write_cifti:[33,78],write_surfac:38,you:[6,85],zoom:17,zscore_matrix:[52,79]}})