text: /* tagAlign.c was originally generated by the autoSql program, which also 
   * generated tagAlign.h and tagAlign.sql.  This module links the database and
   * the RAM representation of objects. */
  
  #include "common.h"
  #include "linefile.h"
  #include "dystring.h"
  #include "jksql.h"
  #include "tagAlign.h"
  
  
  void tagAlignStaticLoad(char **row, struct tagAlign *ret)
  /* Load a row from tagAlign table into ret.  The contents of ret will
   * be replaced at the next call to this function. */
  {
  
  ret->chrom = row[0];
  ret->chromStart = sqlUnsigned(row[1]);
  ret->chromEnd = sqlUnsigned(row[2]);
  ret->sequence = row[3];
  ret->score = sqlSigned(row[4]);
  ret->strand = row[5][0];
  }
  
  struct tagAlign *tagAlignLoad(char **row)
  /* Load a tagAlign from row fetched with select * from tagAlign
   * from database.  Dispose of this with tagAlignFree(). */
  {
  struct tagAlign *ret;
  
  AllocVar(ret);
  ret->chrom = cloneString(row[0]);
  ret->chromStart = sqlUnsigned(row[1]);
  ret->chromEnd = sqlUnsigned(row[2]);
  ret->sequence = cloneString(row[3]);
  ret->score = sqlSigned(row[4]);
  ret->strand = row[5][0];
  return ret;
  }
  
  struct tagAlign *tagAlignLoadAll(char *fileName) 
  /* Load all tagAlign from a whitespace-separated file.
   * Dispose of this with tagAlignFreeList(). */
  {
  struct tagAlign *list = NULL, *el;
  struct lineFile *lf = lineFileOpen(fileName, TRUE);
  char *row[6];
  
  while (lineFileRow(lf, row))
      {
      el = tagAlignLoad(row);
      slAddHead(&list, el);
      }
  lineFileClose(&lf);
  slReverse(&list);
  return list;
  }
  
  struct tagAlign *tagAlignLoadAllByChar(char *fileName, char chopper) 
  /* Load all tagAlign from a chopper separated file.
   * Dispose of this with tagAlignFreeList(). */
  {
  struct tagAlign *list = NULL, *el;
  struct lineFile *lf = lineFileOpen(fileName, TRUE);
  char *row[6];
  
  while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
      {
      el = tagAlignLoad(row);
      slAddHead(&list, el);
      }
  lineFileClose(&lf);
  slReverse(&list);
  return list;
  }
  
  struct tagAlign *tagAlignCommaIn(char **pS, struct tagAlign *ret)
  /* Create a tagAlign out of a comma separated string. 
   * This will fill in ret if non-null, otherwise will
   * return a new tagAlign */
  {
  char *s = *pS;
  
  if (ret == NULL)
      AllocVar(ret);
  ret->chrom = sqlStringComma(&s);
  ret->chromStart = sqlUnsignedComma(&s);
  ret->chromEnd = sqlUnsignedComma(&s);
  ret->sequence = sqlStringComma(&s);
  ret->score = sqlSignedComma(&s);
  sqlFixedStringComma(&s, &(ret->strand), sizeof(ret->strand));
  *pS = s;
  return ret;
  }
  
  void tagAlignFree(struct tagAlign **pEl)
  /* Free a single dynamically allocated tagAlign such as created
   * with tagAlignLoad(). */
  {
  struct tagAlign *el;
  
  if ((el = *pEl) == NULL) return;
  freeMem(el->chrom);
  freeMem(el->sequence);
  freez(pEl);
  }
  
  void tagAlignFreeList(struct tagAlign **pList)
  /* Free a list of dynamically allocated tagAlign's */
  {
  struct tagAlign *el, *next;
  
  for (el = *pList; el != NULL; el = next)
      {
      next = el->next;
      tagAlignFree(&el);
      }
  *pList = NULL;
  }
  
  void tagAlignOutput(struct tagAlign *el, FILE *f, char sep, char lastSep) 
  /* Print out tagAlign.  Separate fields with sep. Follow last field with lastSep. */
  {
  if (sep == ',') fputc('"',f);
  fprintf(f, "%s", el->chrom);
  if (sep == ',') fputc('"',f);
  fputc(sep,f);
  fprintf(f, "%u", el->chromStart);
  fputc(sep,f);
  fprintf(f, "%u", el->chromEnd);
  fputc(sep,f);
  if (sep == ',') fputc('"',f);
  fprintf(f, "%s", el->sequence);
  if (sep == ',') fputc('"',f);
  fputc(sep,f);
  fprintf(f, "%d", el->score);
  fputc(sep,f);
  if (sep == ',') fputc('"',f);
  fprintf(f, "%c", el->strand);
  if (sep == ',') fputc('"',f);
  fputc(lastSep,f);
  }
  
  /* -------------------------------- End autoSql Generated Code -------------------------------- */
  
  