text: # Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
  # Spack Project Developers. See the top-level COPYRIGHT file for details.
  #
  # SPDX-License-Identifier: (Apache-2.0 OR MIT)
  
  from spack import *
  
  
  class PyUnicycler(PythonPackage):
      """Unicycler is an assembly pipeline for bacterial genomes. It can
      assemble Illumina-only read sets where it functions as a SPAdes-optimiser.
      It can also assembly long-read-only sets (PacBio or Nanopore) where it
      runs a miniasm+Racon pipeline. For the best possible assemblies, give it
      both Illumina reads and long reads, and it will conduct a hybrid assembly.
      """
  
      homepage = "https://github.com/rrwick/Unicycler"
      url      = "https://github.com/rrwick/Unicycler/archive/v0.4.5.tar.gz"
  
      version('0.4.7', '10ee4fef4bd9a46702de83537a902164')
      version('0.4.6', '78633a5f557af23e62d6b37d1caedf53')
      version('0.4.5', 'f7b4f6b712fee6a4fa86a046a6781768')
  
      depends_on('python@3.4:', type=('build', 'link', 'run'))
      depends_on('py-setuptools', type=('build', 'run'))
      depends_on('spades', type='run')
      depends_on('pilon', type='run')
      depends_on('jdk', type=('build', 'run'))
      depends_on('bowtie2', type='run')
      depends_on('samtools@1.0:', type=('build', 'link', 'run'))
      depends_on('racon', type=('build', 'link', 'run'))
      depends_on('blast-plus', type='run')
  
      conflicts('%gcc@:4.9.0')
      conflicts('%clang@:3.4.2')
  