text: /* mahoney.h was originally generated by the autoSql program, which also 
   * generated mahoney.c and mahoney.sql.  This header links the database and
   * the RAM representation of objects. */
  
  /* Copyright (C) 2005 The Regents of the University of California 
   * See README in this or parent directory for licensing information. */
  
  #ifndef MAHONEY_H
  #define MAHONEY_H
  
  #define MAHONEY_NUM_COLS 19
  
  struct mahoney
  /* Tabular data from Paul Gray/Mahoney spread sheet */
      {
      struct mahoney *next;  /* Next in singly linked list. */
      char *empty;	/* Always blank */
      int mtf;	/* mahoney id */
      char *sameAs;	/* comma sep list of ids */
      char *geneName;	/* HUGO name if available */
      char *domain;	/* Domain that marks it as a transcription factor */
      char *genbank;	/* genbank (including refSeq) ID */
      char *locusId;	/* locus link id */
      char *unigene;	/* unigene id */
      char *fragSize;	/* PCR product size */
      char *linzyme;	/* Restriction enzyme to linearize */
      char *rnaPol;	/* DNA->RNA enzyme, usually T7 */
      char *cloneVector;	/* Cloning vector */
      char *seqVerified;	/* X if true */
      char *startLoc;	/* start base pair location */
      char *endLoc;	/* end base pair location */
      char *fPrimer;	/* Forward primer */
      char *rPrimer;	/* Reverse primer */
      char *fAdaptor;	/* Start adapter enzyme */
      char *rAdaptor;	/* End adapter enzyme */
      };
  
  void mahoneyStaticLoad(char **row, struct mahoney *ret);
  /* Load a row from mahoney table into ret.  The contents of ret will
   * be replaced at the next call to this function. */
  
  struct mahoney *mahoneyLoad(char **row);
  /* Load a mahoney from row fetched with select * from mahoney
   * from database.  Dispose of this with mahoneyFree(). */
  
  struct mahoney *mahoneyLoadAll(char *fileName);
  /* Load all mahoney from whitespace-separated file.
   * Dispose of this with mahoneyFreeList(). */
  
  struct mahoney *mahoneyLoadAllByChar(char *fileName, char chopper);
  /* Load all mahoney from chopper separated file.
   * Dispose of this with mahoneyFreeList(). */
  
  #define mahoneyLoadAllByTab(a) mahoneyLoadAllByChar(a, '\t');
  /* Load all mahoney from tab separated file.
   * Dispose of this with mahoneyFreeList(). */
  
  struct mahoney *mahoneyCommaIn(char **pS, struct mahoney *ret);
  /* Create a mahoney out of a comma separated string. 
   * This will fill in ret if non-null, otherwise will
   * return a new mahoney */
  
  void mahoneyFree(struct mahoney **pEl);
  /* Free a single dynamically allocated mahoney such as created
   * with mahoneyLoad(). */
  
  void mahoneyFreeList(struct mahoney **pList);
  /* Free a list of dynamically allocated mahoney's */
  
  void mahoneyOutput(struct mahoney *el, FILE *f, char sep, char lastSep);
  /* Print out mahoney.  Separate fields with sep. Follow last field with lastSep. */
  
  #define mahoneyTabOut(el,f) mahoneyOutput(el,f,'\t','\n');
  /* Print out mahoney as a line in a tab-separated file. */
  
  #define mahoneyCommaOut(el,f) mahoneyOutput(el,f,',',',');
  /* Print out mahoney as a comma separated list including final comma. */
  
  /* -------------------------------- End autoSql Generated Code -------------------------------- */
  
  #endif /* MAHONEY_H */
  
  