text: # Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
  # Spack Project Developers. See the top-level COPYRIGHT file for details.
  #
  # SPDX-License-Identifier: (Apache-2.0 OR MIT)
  
  from spack import *
  
  
  class RPhangorn(RPackage):
      """Package contains methods for estimation of phylogenetic trees and
         networks using Maximum Likelihood, Maximum Parsimony, distance methods
         and Hadamard conjugation. Allows to compare trees, models selection and
         offers visualizations for trees and split networks."""
  
      homepage = "https://cloud.r-project.org/package=phangorn"
      url      = "https://cloud.r-project.org/src/contrib/phangorn_2.3.1.tar.gz"
      list_url = "https://cloud.r-project.org/src/contrib/Archive/phangorn"
  
      version('2.5.5', sha256='c58dc1ace26cb4358619a15da3ea4765dbdde1557acccc5103c85589a7571346')
      version('2.5.3', sha256='a306585a0aabe7360a2adaf9116ae2993fb5ceff641b198f2e01e4329d3768af')
      version('2.3.1', sha256='518c31f5b2c5f0a655d02a3c71b00c30caea2794dfc31f9d63f3d505bd7863eb')
  
      depends_on('r@3.2.0:', type=('build', 'run'))
      depends_on('r-ape@5.0:', type=('build', 'run'))
      depends_on('r-quadprog', type=('build', 'run'))
      depends_on('r-igraph@1.0:', type=('build', 'run'))
      depends_on('r-matrix', type=('build', 'run'))
      depends_on('r-fastmatch', type=('build', 'run'))
      depends_on('r-magrittr', type=('build', 'run'))
      depends_on('r-rcpp@0.12.0:', type=('build', 'run'))
  